Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bhi01g03509 ATCGCTTCGCCATTTGCCCCTTTTCCCATCCATCCCACTCCACTTGGTTGGATATTTCAAACTTGGGTATATTTTGCCGTCAAGCAAAAACATTTACACTCGCCAGAACAGAGTCTGGGATTAAAATAATTATCGTCTGACAGAGAAAAAGAGAGAAATAAAAGAAGAAGAAGGGGGCTTGTTTCCTTTTCCTTTCTCGACGGTGGAAACAGACCCATCCATCTCCTTTCTCTTTTAATTCATTCTTCACTTTACATCAATTCATTGCTATTTGGGGATAGAAACAGAGACCGGGATTCCGAGCTTCCGGTCCTTTCTTCTTCTTCATTGTTTTTCCTATTACACACCCGGTTTCTGATTTTTCTTCTTTCTTTCCATTCTGGGTCTGTTCTTTTCGATGATTTGCATGATGGGTTTTTGAGTTTTTGGGTTTTGAAGGGGGTGCGTGTTGAACAAGGGTGGAGGGTTTTTGAGGTGAAGGAAGTTGGGGAAGAGGAGGAATGACTTGGAGAAGAGTGTTGAAGTCCGTGCAGGCTCTTCTGGCCCACGGTTCACTCTTCTGTTTCACGCTCTTGCTCGTTCTCAAGCTCGATCATTTCTTCTCCCACAGTTGGTGGGTCATATTTTTTCCACTTTGGGTGTTTCATGTGGTTGTTGCTCGAGGAAGGTTCTCATTACCTGCCCCATCTCTTCCTCATAATCGTCATTGGGCACCGTGCCATGCTGTCGTTGCGACACCTTTGCTTATAGCATTTGAATTACTTCTTTGTATATACCTCGAGAGCCTATCTGTTTATGGTTTTGCTGCTGTGAACTTGAAGATTGTCTTTCTACCGTTGCTGGCATTTGAAATCATTATTTTAATTGATAATTTCAGAATGTGTAGGTCACTGATGCCTGGTGATGATGAAAGCATGAGTGATGAGGCAATATGGGAGACGCTGCCTCACTTTTGGGTTGCCATTTCAATGGTCTTCTTTGTCGCTGCTACAGTATTTACCCTACTGAAGCTATGTGGAAATGTTGGTGCTCTTGGCTGGTGGGACTTATTTATAAATTTTGGCATTGCCGAGTGCTTTGCGTTTCTTGTATGTACAAAGTGGTCTAATCCAGCGATTCATAGAAATATTCAAACAAGAGAACGTTGTTCATCATCATCAGTAGTTAGATATCTAGATTGGAACAGTGGTCTAATAGTTTACCCAGAGCAGGATCAGCATCAGGACAGAATGTGTGGCCTTCAAGACATTGGAGGCCATATCATGAAAATTCCCATAATTGTTTTTCAAATCCTACTCTGCATGTATTTAGAGGGGACACCTGCGAGTGCTAAAAGTATGCCACTTCCTGTCCTTTTCTCGCCCCTTTTTATATTGCAAGGTGCTGCTGTTATTTATGCTACTTCCAGATTGTTAGAGAAAGCTGTACTTCTCTTAAGAGGCGGATCTGGCACGGCATTGTATTTCAGTTTTTCAATTAGGGCTCATTCCTGTTTGGAGTTCTTTCATCATGGTTCAAGGCTATTGGGGTGGTGGTCAATTGATGAAGGCAGTCGAGAGGAGCAGGCACGATTGTACCATGAGGGTGCCTCTGGGTACAATACTTTTAGTGGATATCCTCCCGAGGTTGTGAAGAAGATGCCCAAGAAAGATCTTGCTGAGGAGGTCTGGCGCCTTCAAGCTGCACTTGGCGAGCAGACAGAAATCACCAAATACAGTCAGCAGGAATATGAAAGACTTCAAAATGAAAAGGTGTTATGTCGGGTTTGTTTCGAGGGAGAAATTAGCGTGGTTCTTCTTCCTTGTAGGCATCGTGTACTCTGCAGTTCCTGCTCTGAGAAGTGTAAAAAGTGCCCGATATGTCGCGTCGTTATCGAAGAACGGTTACCGGTATATGATGTATAGATCTTTAACTAATCTAAAGGAACCAAAGTGCATATTGATGGTGGCAAATTGATAGTGTTTTGGTGATAGTGAAGAATTGGAAATGTTGGTGGCTCATGATAATACTGATTAAGGAAGATACTTTGGTATAGAAAATTCAGTTGCAATACTAAACCCCCTGCTTGAACTCTCGTCTCTGTTTCAAATGTAAAAAAGTGGGTTTCTGTGAGGGTAATTAACAATGATAGTAGAATACAAGTCAGTTGCTCTTGCTATTGTATAATTCGGGTTTCTTCCCCCTCCCCTTTTCACTTGATTCTCTGTATAGAATAACTTTTTAACTCCAATTATAATCCAAGTTTTATTGCCTCCCTCCCAGGGAATGGAGCTAACAGCAAA 2282 42.16 MTWRRVLKSVQALLAHGSLFCFTLLLVLKLDHFFSHSWWVIFFPLWVFHVVVARGRFSLPAPSLPHNRHWAPCHAVVATPLLIAFELLLCIYLESLSVYGFAAVNLKIVFLPLLAFEIIILIDNFRMCRSLMPGDDESMSDEAIWETLPHFWVAISMVFFVAATVFTLLKLCGNVGALGWWDLFINFGIAECFAFLVCTKWSNPAIHRNIQTRERCSSSSVVRYLDWNSGLIVYPEQDQHQDRMCGLQDIGGHIMKIPIIVFQILLCMYLEGTPASAKSMPLPVLFSPLFILQGAAVIYATSRLLEKAVLLLRGGSGTALYFSFSIRAHSCLEFFHHGSRLLGWWSIDEGSREEQARLYHEGASGYNTFSGYPPEVVKKMPKKDLAEEVWRLQAALGEQTEITKYSQQEYERLQNEKVLCRVCFEGEISVVLLPCRHRVLCSSCSEKCKKCPICRVVIEERLPVYDV 467
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 88566411 88574649 - XM_039038630.1 Bhi01g03509 26282
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bhi01g03509 467 Pfam Transmembrane Fragile-X-F protein 28 292 IPR019396 -
Bhi01g03509 467 PANTHER TRANSMEMBRANE FRAGILE-X-F-ASSOCIATED PROTEIN 1 467 - -
Bhi01g03509 467 SMART ring_2 420 454 IPR001841 -
Bhi01g03509 467 Pfam Zinc finger, C3HC4 type (RING finger) 417 460 - -
Bhi01g03509 467 SUPERFAMILY RING/U-box 411 462 - -
Bhi01g03509 467 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 1 467 - -
Bhi01g03509 467 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 396 465 IPR013083 -
Bhi01g03509 467 ProSiteProfiles Zinc finger RING-type profile. 420 455 IPR001841 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bhi01g03509 Bhi-Chr1:88566411 Bhi08g00528 Bhi-Chr8:17742356 0 dispersed
Bhi01g03509 Bhi-Chr1:88566411 Bhi10g01955 Bhi-Chr10:48693842 8.66E-11 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bhi01g03509 - - csv:101215825 935.636