Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bhi01g03553 GTTTTGAAACAATATGGGGAAACAACAAAACAAGTTTAGAGGAGTGAGGCAACGGCGGTGGGGCTCATGGGTCTCTGAAATTCGTCATCCTCTTCTGAAGAGAAGAGTTTGGTTGGGAACGTTTGAAACGGCTGAGGACGCAGCTCGAGCCTACGATGAGGCCGCCATTCTCATGAGCGGTCGAACTGCAAAAACCAACTTTCCTGTGTCCACCGCCATGGTCAGAACTGAAGCTCGAAATATTCCTCCATTTTCGCCGTTGTCGACAATTCTCAACACTAAACTTCGCAAGTGTTGGAAATCTCTTCCTCCTTCTCTAACTTGCCTTCGTCTCGACACCGAGAGTTGTCGCATTGGTGTTTGGCAGAGACATGTGGGACATTGCCGAGTGGTCGACTCGAGCTGGGTGATGATGGTGGAGCTTGAGAAGAAGAACAATGACGGATTCCGAGTAACGGATGAGTCATCGGAAAATGGTGTGGAAGATCGGGTGAGACTAATTTCAGATGGGACAGAAAGTTTAGATGAGGAAGAAAGAGCTGCTTTGCAAATGATTGAAGAACTTTTGAATAAGATATGAATCATACAGATTTTTCAAGAA 601 46.26 MGKQQNKFRGVRQRRWGSWVSEIRHPLLKRRVWLGTFETAEDAARAYDEAAILMSGRTAKTNFPVSTAMVRTEARNIPPFSPLSTILNTKLRKCWKSLPPSLTCLRLDTESCRIGVWQRHVGHCRVVDSSWVMMVELEKKNNDGFRVTDESSENGVEDRVRLISDGTESLDEEERAALQMIEELLNKI 188
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 90359359 90360284 + XM_039020532.1 Bhi01g03553 26326
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bhi01g03553 188 CDD AP2 7 66 IPR001471 GO:0003700|GO:0006355
Bhi01g03553 188 PANTHER ETHYLENE RESPONSE FACTOR 4 187 - -
Bhi01g03553 188 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 4 187 - -
Bhi01g03553 188 Pfam AP2 domain 7 55 IPR001471 GO:0003700|GO:0006355
Bhi01g03553 188 ProSiteProfiles AP2/ERF domain profile. 7 64 IPR001471 GO:0003700|GO:0006355
Bhi01g03553 188 SMART rav1_2 7 70 IPR001471 GO:0003700|GO:0006355
Bhi01g03553 188 Gene3D AP2/ERF domain 6 66 IPR036955 GO:0003700|GO:0006355
Bhi01g03553 188 SUPERFAMILY DNA-binding domain 7 66 IPR016177 GO:0003677
Bhi01g03553 188 PRINTS Ethylene responsive element binding protein signature 8 19 IPR001471 GO:0003700|GO:0006355
Bhi01g03553 188 PRINTS Ethylene responsive element binding protein signature 30 46 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bhi01g03553 Bhi-Chr1:90359359 Bhi09g02244 Bhi-Chr9:63152729 5.22E-61 dispersed
Bhi04g00036 Bhi-Chr4:843250 Bhi01g03553 Bhi-Chr1:90359359 6.72E-36 dispersed
Bhi01g03553 Bhi-Chr1:90359359 Bhi02g00994 Bhi-Chr2:22244594 6.81E-54 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
325 PF00847 AP2 1.30E-12 CL0081 Bhi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bhi01g03553 - - csv:101211468 273.478