Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bhi01g03729 TTCAAAAAGTAGTTTCTAGAAAGGACGGAGCAAAGGACTGAGAATTTTTAAAGAGTGCCCTTTCTGCTTCTTCTTCATCCGAACCTCAGGGCTCAGATTATTGTAATTGACTTGCTTGACTCGCTTCAGTAATGGGGGAGTTTACTCCCAATCCCAATCTCCATCTTCTCCCATCAATGAAGCTTTTCGTTCTACTTCTACTCATCAATTCCATCCTCACCTTCCACTCTGCTCTCTCTGAAATTTTCTTCGAAGAGCGATTCGAAGATGGATGGAAGAGTCGTTGGGTCTTATCTGATTGGAAAAGAAGTGAAGGGAAAGCTGGGACTTTTAAGCACACCGCCGGAAAATGGTCTGGAGATCCAGACGATAAAGGTATTCAGACTTACAATGATGCTAAGCATTTCGCAATATCTGCAAAGATACCAGAGTTCTCCAATGAGAACAGAACTCTAGTGGTTCAGTATTCTATCAAATTTGAACAGGAAATTGAATGTGGTGGCGGGTACATCAAGCTTCATTCTGGTTATGTCAATCAGAAGAAATATGGCGGTGATACCCCTTACAGTATGATGTTTGGACCGGATTTATGTGGTACACAGACGAAAAAACTTCATGCAATACTTTCTTACCAGGGGCAGAATTATCCTATAAAGAAGGATTTGCAATGCGAAACAGACAAGTTAACTCATTTCTACACGTTCATTCTTAGGCCCGATGCTAGTTACAGTATCCTTGTCGATAATCGAGAACGAGATTCTGGAAGCATGTACAGTGATTGGGACATCCTGCCACCTAGGAAAATCAAAGATGTTAAGGCAAAAAAGCCTGCCGACTGGGATGACAGAGAATACATTGAAGATCCTAATGATGTTAAACCGGAGGGATACGATTCAATTCCAGCTGAGATTCCTGATCCGAAGGCAAAAGAGCCTGATACATGGGACGAGGATGAGGATGGCATATGGAAGGCTCCTAAGGTTCCAAATCCAGCATACAAGGGACCGTGGAAGCGTAAGAAAATCAAAAACCCCAATTACAAGGGAAAGTGGAAGACTCCATGGATTGATAATCCAGAGTTTGAGGACGATCCTAATCTTTACGTGCTAAAACCAATAAAGTATGTGGGCATTGAAGTTTGGCAGGTAAAAGCTGGATCAGTTTTTGACAACATTTTGATATGCGATGACCCACAGTATGCAAAGGAAGTTGTTGATGATACGTTTGCAAGGAATAAGGAGGCAGAAAAGGAAGCTTTTGAGGAAGCAGAGAAAGAAAGGAAAGCTAGGGAAGAAAAGGAGGCTGAGAGGGCTCGAGAGGAAGGTGAAAGGAGAAGAAGGGAACGAGACAATCGTCATAGAGATAGGCGGAGGCATTATCGAAGGGATCGGCATGACTTTGATGACTACTACCATGATGAGTTATGAGGATGGTTTGGAAGTCCCACTAGCTTCAGTTCAGTTGGTCCAAAGGACATCCTCCAACCGTGCTTCTGCTGTGACATTAGAAACCTAACTGCCTTCAATTAAAATTATTGTATTGAAATTTGCACATTTAAGGGGTTCTGTAGTTTTCTTTCCACTTTGTATTTCTTGGGTTTGAATCTTTGCAGGTCCTGAAATTTGCTTTTCAGAACAGCAAATTCCAAGTCATATGGACTCATTGATTATTAATAATTTTACTCATAATTATTTCTC 1697 41.54 MGEFTPNPNLHLLPSMKLFVLLLLINSILTFHSALSEIFFEERFEDGWKSRWVLSDWKRSEGKAGTFKHTAGKWSGDPDDKGIQTYNDAKHFAISAKIPEFSNENRTLVVQYSIKFEQEIECGGGYIKLHSGYVNQKKYGGDTPYSMMFGPDLCGTQTKKLHAILSYQGQNYPIKKDLQCETDKLTHFYTFILRPDASYSILVDNRERDSGSMYSDWDILPPRKIKDVKAKKPADWDDREYIEDPNDVKPEGYDSIPAEIPDPKAKEPDTWDEDEDGIWKAPKVPNPAYKGPWKRKKIKNPNYKGKWKTPWIDNPEFEDDPNLYVLKPIKYVGIEVWQVKAGSVFDNILICDDPQYAKEVVDDTFARNKEAEKEAFEEAEKERKAREEKEAERAREEGERRRRERDNRHRDRRRHYRRDRHDFDDYYHDEL 431
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 95846375 95854673 - XM_039042790.1 Bhi01g03729 26502

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bhi01g03729 431 ProSitePatterns Calreticulin family signature 2. 147 155 IPR018124 GO:0005509
Bhi01g03729 431 MobiDBLite consensus disorder prediction 371 405 - -
Bhi01g03729 431 MobiDBLite consensus disorder prediction 260 280 - -
Bhi01g03729 431 Coils Coil 368 406 - -
Bhi01g03729 431 MobiDBLite consensus disorder prediction 236 283 - -
Bhi01g03729 431 PANTHER CALRETICULIN-3 15 431 - -
Bhi01g03729 431 PRINTS Calreticulin signature 117 135 IPR001580 GO:0005509|GO:0005783|GO:0006457|GO:0051082
Bhi01g03729 431 PRINTS Calreticulin signature 143 159 IPR001580 GO:0005509|GO:0005783|GO:0006457|GO:0051082
Bhi01g03729 431 PRINTS Calreticulin signature 232 245 IPR001580 GO:0005509|GO:0005783|GO:0006457|GO:0051082
Bhi01g03729 431 PRINTS Calreticulin signature 260 282 IPR001580 GO:0005509|GO:0005783|GO:0006457|GO:0051082
Bhi01g03729 431 PRINTS Calreticulin signature 298 317 IPR001580 GO:0005509|GO:0005783|GO:0006457|GO:0051082
Bhi01g03729 431 PRINTS Calreticulin signature 331 351 IPR001580 GO:0005509|GO:0005783|GO:0006457|GO:0051082
Bhi01g03729 431 Gene3D Calreticulin/calnexin, P domain 222 323 IPR009033 GO:0005509|GO:0005515
Bhi01g03729 431 SUPERFAMILY P-domain of calnexin/calreticulin 218 333 IPR009033 GO:0005509|GO:0005515
Bhi01g03729 431 Gene3D - 37 393 - -
Bhi01g03729 431 MobiDBLite consensus disorder prediction 236 250 - -
Bhi01g03729 431 SUPERFAMILY Concanavalin A-like lectins/glucanases 36 235 IPR013320 -
Bhi01g03729 431 PIRSF Calreticulin 16 426 IPR009169 GO:0005509|GO:0005783|GO:0006457|GO:0051082
Bhi01g03729 431 MobiDBLite consensus disorder prediction 371 414 - -
Bhi01g03729 431 PANTHER CALRETICULIN AND CALNEXIN 15 431 IPR001580 GO:0005509|GO:0005783|GO:0006457|GO:0051082
Bhi01g03729 431 Pfam Calreticulin family 277 350 IPR001580 GO:0005509|GO:0005783|GO:0006457|GO:0051082
Bhi01g03729 431 Pfam Calreticulin family 41 276 IPR001580 GO:0005509|GO:0005783|GO:0006457|GO:0051082
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bhi01g03729 K08057 CALR; calreticulin - csv:101203114 762.681
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bhi01g03729 Bhi-Chr1:95846375 Bhi06g01488 Bhi-Chr6:44711422 5.13E-169 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g1236 . . . . . Bpe14g01055 . . . . Cma06g01737 . . . Sed02g0957 . . Bhi01g03729 Tan10g1382 Cmetu07g1340 . Hepe05g1091 . Lcy11g0995 . . . . . . . . . . . . . . Cme07g01976 . Blo07g00110 Bda11g00474 . . . . Bma06g01436 . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008608 1 1 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 4 1 1 1 2 1 1 1 1 1 2 1 2 35