Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bhi02g00017 CTCTTATCCTGAAGAACCACAATAACCTCTGATAAAAATGCATATATCAACAATGCCCTTCCTCCACCACACCACCACCTCCATCGCCTCCTTCGATTCCGATCTTCTTCAATCGGTGGGATCGCCGTCGTCAGTTTCCGGTTTCGTTTATTCGTTTTTCTCCGTTGGCTTCTGGGACGCCTCTTGAAGGTTCGATATGGAGCCGATGGACATAGTTGGAAAGTCTAAAGAGGACGCCTCGCTTCCTAAGGCGACTATGACCAAAATTATCAAAGAGATGTTGCCCCCTGATGTACGGGTTGCAAGAGACGCCCAAGATCTTCTAATTGAGTGTTGTGTAGAGTTTATAAATCTTGTATCATCCGAGTCTAATGAAGTTTGTAGCAAAGAAGAAAAAAGAACAATTGCACCTGAGCACGTGCTGAAGGCTCTTGAGGTGCTTGGTTTTAGTGAATACATTGAGGAAGTTTATGCTGCATATGAACAACACAGGCTCGAAACTATGCAAGACTCATTGAAAGGTGGGAAGTGGAGTAATGGCGCGGAGATGACCGAAGAAGAAGCTTTGGCTGAGCAGCAAAGAATGTTTGCCGAGGCACGTGCAAGAATGAATGGCAGTAACACTGCACCCAAGCAACCGGAGCCTGAGCAAAGTTTAGAGAGCTAATTTTAGGATCTTTATTTTCTTCAACCATAGGCAAGATTCCTTGACCCCTTCCATTTGTGCCTCAAATATGCCTTGTGCATATGTACAAAAAAGAAATGATTAACCTAGCTACTGGGCTCTGTGAAGATGCATTGTAATATATATCCATATTTGCGGATCCTTGTTTAGTTAATACAAGTAGTGACTGTGTTTAAA 862 43.39 MEPMDIVGKSKEDASLPKATMTKIIKEMLPPDVRVARDAQDLLIECCVEFINLVSSESNEVCSKEEKRTIAPEHVLKALEVLGFSEYIEEVYAAYEQHRLETMQDSLKGGKWSNGAEMTEEEALAEQQRMFAEARARMNGSNTAPKQPEPEQSLES 156
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 339243 342734 - XM_039023199.1 Bhi02g00017 26539

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bhi02g00017 156 MobiDBLite consensus disorder prediction 134 156 - -
Bhi02g00017 156 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 14 79 IPR003958 -
Bhi02g00017 156 SUPERFAMILY Histone-fold 12 142 IPR009072 GO:0046982
Bhi02g00017 156 PANTHER PROTEIN DR1 HOMOLOG 1 155 IPR044255 -
Bhi02g00017 156 MobiDBLite consensus disorder prediction 140 156 - -
Bhi02g00017 156 Gene3D Histone, subunit A 4 145 IPR009072 GO:0046982
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bhi02g00017 K21751 DR1, NC2-beta; down-regulator of transcription 1 - csv:101214627 303.138
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bhi02g00017 Bhi-Chr2:339243 Bhi07g01026 Bhi-Chr7:33549773 2.85E-19 dispersed
Bhi02g00017 Bhi-Chr2:339243 Bhi02g00018 Bhi-Chr2:339243 3.52E-112 tandem
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Bhi02g00017 . 1 149 CCAAT-DR1 Transcription Factor Family AT5G08190 84.6 1.8e-63 239.6
Bhi02g00018 . 1 153 CCAAT-DR1 Transcription Factor Family AT5G08190 82.4 5.3e-63 238.0
Bhi02g00017 . 1 151 CCAAT-DR1 Transcription Factor Family AT5G23090 83.4 1.3e-66 250.0
Bhi02g00018 . 1 155 CCAAT-DR1 Transcription Factor Family AT5G23090 81.3 7.3e-65 244.2
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004258 4 2 3 2 2 1 2 1 1 1 1 1 2 1 1 2 1 2 0 1 1 1 1 1 1 1 0 3 2 1 43
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
333 PF00808 CBFD_NFYB_HMF 2.70E-22 CL0012 Bhi TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bhi02g00017 Bhi_Chr02 FPKM 3.820231 3.227594 5.616168 5.29915 13.536325 14.9494 15.088771 64.63179 59.69392 58.507778