Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bhi02g00046 TTCGGAAATTAAAAGAAAAAGAAAAAGAAAAAGGAAAGTCATGCTTTCGTTGATGCGTTCGATAAGCTGAGAGTGGAGAAAAATCGGTTAGCTTTGTCCAGAGAAATGGCGAAGCTGCTTCTCCATCTTCAAGCTCCTCATCTCGTTTCTTCCCTCAATCGCGGAACCCTCTCATTCATACTCTCCAAACCACTTCCAATCCTCTCTTCTTCTTCTTCTTCTTCTTCTTCATCATCATCCTTACAATGCCGCTTCGCTCTTGCTCTCCCCTCTTCTTCTGCTTCACGCCGCTGCTTCTCTGTTCGAGCATTCGACGACTCTGCATCAGAGACTAAACGCATGGAAAGAGAAGAAGCAGACGCTGCAAACGAGGCTTCCATGAGCAGCGATGGCGTCAGGGCTCGTGGTGAGGATTATCCTAGCGGAGAATTTGAGTTCGAGAAGTTTGGCCCGTGGAGGAGCTTTTCGGTGAAGCTTAAGATGCTGGTGGCCTTTCCTTGGGAACGCGTTCGCAAGGGCAGTGTCTTGACTATGAAATTGCGAGGGCAGATATCTGATCAGCTAAAGAGCCGTTTCTCTTCAGGGCTTTCCCTACCTCAAATCTGCGAGAACTTTCTCAAAGCTGCATATGATCCTCGTATTTCTGGGATCTATTTGCAAATTGAGGCTCTAAATTGTGGGTGGGGTAAAGTTGAAGAAATTCGAAGGCATATCCTGAATTTCAAGAAATCAGGTAAATTTATTGTTGCCTATATTCCTACATGTCAAGAGAAAGAATACTACCTGGCATGTGCATGTGAGGAGATATATGCCCCTCCAAGTGCTTATGTTTCTTTGTTTGGTTTGACTGTTCAAGCTTCATTTCTCAGAGGTATTTTTGATAAAATAGGGATTGAACCACAAGTGGAAAGGATAGGTAAATATAAAAGTGCTGGTGATCAACTTGCACGGAGAAATATGTCAGAAGAAAATTGTGAAATGTTGACGACATTGCTTGATAACATCTATGACAACTGGCTGGATAAAATTTCTTCAATAAAAGGAAAGAAAAAGGATGATGTTGAAAACTTTATTAATGAAGGAGTGTACCAAATTGAAAGACTGAAAGAAGATGGCTGGATCACCAATATACAGTATGAGGATGAGGTACTCTCTATGCTAAGTGAAAGACTTGGTCTGCCAAAGGACAAAAAGGTTCCCATGGTTGATTACAGGAAGTACTCTAGAGTTAGGCAATGGACCGTTGGTTTATCAGGAGGTGGAGACCAAATAGCTGTGATTAGAGCTGGAGGAAGCATTACTCGTGTAAAAAGTCCTTTAAGTGTTCCTAGTTCTGGTATTATTGGGGAGCAATTCATTGAGAAGATTCGGAGTGTTAGAGAGTCGAAAAGATTCAAGGCTGCCATCATCAGAATTGACAGTCCTGGAGGCGATGCTCTTGCTTCTGATTTAATGTGGCGAGAAATCAGACTTCTGGCTGCATCAAAACCTGTTGTTGCATCCATGGCTGATGTGGCAGCCAGTGGAGGATACTATATGGCAATGGCAGCTGGGACAATTGTTGCAGAAGATCTAACCTTAACTGGTTCCATTGGAGTTGTCACAGGCAAGTTTAACTTGGGGAAACTATATGAAAAGATTGGCTTTAACAAGGAAATCATATCGAGGGGACGGTTTGCTGAGCTTCTTGCGGCTGAACAACGACCTTTCAGACCGGATGAAGCAGAACTCTTTGCCAAGTCTGCACAAAATGCGTACAAGCAATTTCGGGACAAAGCAGCCTTTTCCAGATCCATGACTGTGGATGAGATGGAGAAAGTTGCACAAGGAAGGGTTTGGACTGGTAAAGATGCAGTATCCCGTGGTTTAGTAGATGCTATTGGTGGCTTTTCTAGGGCTGTTGCAATAGCAAAACTGAAAGCCAACATTCCTCAAGACAGCCAGGTTAATCTTGTGGAATTATCGAGACCATCGCCAACGCTACCAGAGATATTAAGCGGAGTAGGGAGTACAATTATTGGAGTTGACAGAACAATGAAAGATCTGGTGCAAGACCTTGCTTTAGCGGAAGGAGTTCAAGCTCGTATGGAAGGGATTATGCTGCAGAGAATGGAGGGATTTTCTTATGGTAACCCCATACTTAGTTTGATAAAAGATTACTTCAGTTCCCTCTAATTTCTTTTGGTGCGTTATTAAAAAGCCATATATGAGTTTTTCAAGAACATTTGTTTCCCATTATTTAGAACTTAAGATATAGGATGTCCCAATTGAACAAGAAACTGTATAGATAATGTCATTGATTGAAAAATTCGGATCCTTTTCATGGATAAATATAGAATCTTTCGGCAA 2349 42.19 MAKLLLHLQAPHLVSSLNRGTLSFILSKPLPILSSSSSSSSSSSSLQCRFALALPSSSASRRCFSVRAFDDSASETKRMEREEADAANEASMSSDGVRARGEDYPSGEFEFEKFGPWRSFSVKLKMLVAFPWERVRKGSVLTMKLRGQISDQLKSRFSSGLSLPQICENFLKAAYDPRISGIYLQIEALNCGWGKVEEIRRHILNFKKSGKFIVAYIPTCQEKEYYLACACEEIYAPPSAYVSLFGLTVQASFLRGIFDKIGIEPQVERIGKYKSAGDQLARRNMSEENCEMLTTLLDNIYDNWLDKISSIKGKKKDDVENFINEGVYQIERLKEDGWITNIQYEDEVLSMLSERLGLPKDKKVPMVDYRKYSRVRQWTVGLSGGGDQIAVIRAGGSITRVKSPLSVPSSGIIGEQFIEKIRSVRESKRFKAAIIRIDSPGGDALASDLMWREIRLLAASKPVVASMADVAASGGYYMAMAAGTIVAEDLTLTGSIGVVTGKFNLGKLYEKIGFNKEIISRGRFAELLAAEQRPFRPDEAELFAKSAQNAYKQFRDKAAFSRSMTVDEMEKVAQGRVWTGKDAVSRGLVDAIGGFSRAVAIAKLKANIPQDSQVNLVELSRPSPTLPEILSGVGSTIIGVDRTMKDLVQDLALAEGVQARMEGIMLQRMEGFSYGNPILSLIKDYFSSL 689
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 927721 936690 + XM_039023434.1 Bhi02g00046 26568

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bhi02g00046 689 Pfam Peptidase family S49 206 355 IPR002142 GO:0006508|GO:0008233
Bhi02g00046 689 Pfam Peptidase family S49 457 607 IPR002142 GO:0006508|GO:0008233
Bhi02g00046 689 Gene3D - 384 531 - -
Bhi02g00046 689 CDD S49_SppA_67K_type 141 354 - -
Bhi02g00046 689 Gene3D - 532 651 - -
Bhi02g00046 689 SUPERFAMILY ClpP/crotonase 129 345 IPR029045 -
Bhi02g00046 689 MobiDBLite consensus disorder prediction 75 98 - -
Bhi02g00046 689 SUPERFAMILY ClpP/crotonase 378 594 IPR029045 -
Bhi02g00046 689 TIGRFAM SppA_dom: signal peptide peptidase SppA, 36K type 400 602 IPR004635 GO:0006508|GO:0008233
Bhi02g00046 689 CDD S49_Sppa_N_C 388 603 IPR002142 GO:0006508|GO:0008233
Bhi02g00046 689 PANTHER PROTEASE 4 59 688 - -
Bhi02g00046 689 Gene3D - 138 374 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bhi02g00046 K04773 sppA; protease IV [EC:3.4.21.-] - csv:101211243 1207.59
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bhi02g00045 Bhi-Chr2:927719 Bhi02g00046 Bhi-Chr2:927721 0 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g409 . . . . . . . . . . . . . . . . . Bhi02g00046 Tan09g1991 . . . . . . . . . . . . Cone2ag0781 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010220 1 2 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 2 32
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bhi02g00046 Bhi_Chr02 FPKM 5.950064 6.160282 8.280352 9.059465 7.001951 7.661925 7.602704 14.476952 15.257114 12.929239