Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bhi02g00048 GCAAGGAAGTGACACAAACAAAACGTCATACATTCTTATTTTCAAAATCTAGATCAAACCACATTTTAACGGTAGAGTTTGGATCATCTTCATAAAAATCTAATCCCATTCAAACGGAGGAAAGAGGGAATTTTGAACTCAGTTCTTGTACACTCTCATATCTATAAGAAAAACTCAAAAACATGTAACAACTTCCATCACTTGCTAACATCAAGGAGCTTTCTTTGATGGCTGTGGTGGCGCCGCCATTCTCCGGCCGCCACCGCCCTCCAATCATATATAAACCAACTCCAACTCCCACATCAATTTTCAAAAATTCCCTTCTTTCAACTTCAACTCCAAAATCGTACTTCTCTGTCTCTGCTCAAACTCAAACCCATCAATCCCGATCCACCAACCCGGTTTCTCAGCTCTCGCTTCTCGAAGAGATTTTCAAGCTCTGTGAAGCAAGTAATCTCAATGGAGCTCTCAATTTTCTTCAGAGAGTATGGAAGAACAATCCTGGTTTTGATTTGGCGCAGAGAAAAGAGGCCATGGGTATGTTGTTGCAGAAATGTGGGCAGCATAAAGACGTCGAAATTGGCCGGAAACTTGATGAAATGTTGTCCGTCTCCTCTCAGTTCTGTGGCGACTTCGTTCTCAATACCCGCCTCATCACTATGTACTCCATTTGTGGATATCCTTCGGATTCTCGATTGGTCTTTGATCGTTTGCAGAACAAGAATTTGTTTCAGTGGAATGCACTTGTTAGTGGGTACGTTAGAAATGAACTGTACGACGAGGCGATTCACACTTTCATTGAGTTGATATCGGTAACCGAATTTGAACCTGATAATTTTACGTTGCCTTGCTTGATTAAGGCCTGTACTGGGAAGTATGATGTTCATTTGGGGCAATCGGTTCATGGGATGGCGGTGAAAATGGGGTTAATCATGGATTTGTTTGTGGGTAATGCGATGATTTCGCTGTATGGCAAATGTGGGTTTGTAGACGAAGCCGTCAAGGTGTTTGACAAAATGCCTGAACGAAACTTGATCTCTTGGAATTCGTTGATTTGTGGGTTTTCTGAGAATGGATTTTGGCTGGAAGCTTATAGTGCTTTTAGGAGTCTTTTGGAGGGTGGTGATGGCTTGATTCCTGATGTTGCTACAATGGTAACTCTGTTGCCTGTGTGCTCAGGAGAAGGAGATGTAGATATGGGAATGGTAATTCATGGGATGGCAGTGAAACTGGGGCTAGTTCATGAACTAATGGTGTGTAATGCTTTGGTTGACATGTATTCAAAATGTGGTTGCTTGTCACAAGCAGTGATTTTGTTTCGTAAGATTGAGAACAAAAATATAGTTTCTTGGAATTCCATGATTGGTGCATATTCTAGGGAAGGATTCGTATATGAAACATTCGAACTGTTGAGGAAGATGTGGATGGAAGAAGAAATGATGGAAGTAAATGAAGTCACCATATTGAATTTGTTACCTGCTTGTTTGGAAGAAACTGAACTGTTGAGTTTGAGGGCACTTCATGGATATTCACTCAGATATTCGTTTCAATGTGACGAATTGATAAATAATGCATTTATAGCGGCCTATGCAAAGTGCGGATCATTGATTTCTGCTGAGCATGTCTTCTTTGGAATGAATACCAAGTCAGTTAGCTCTTGGAATGCAATCGTTGGTGGATATGCTCAAAATGGTGATCCAAGAAAAGCTTTAGATTTTTATTTTCAGATGACACGTTTGGGCTTCCTTCCCGATGATTTTAGCATTGCTAGCCTACTATTGGCTTGTGCCCGTTTGGGACATCTACAATATGGCAAAGAGATACATGGATTTGTGTTAAGGAATGGATTAGAGATGGATTCATTTGTTGCTGTCTCTTTGCTATCACTTTATATCCATTCTTCAAAACCTTTATATGCTAGAACTTACTTTGAGAGGATGGGAAACAAAAACTTAGTGTGTTGGAATGCAATGCTTTCTGGTTATTCTCAAAATGAACTTCCAAACGAAGCACTCTCTCTGTTTCGTGAAATGCTTTCTGAACAACTCGAAACTAACAAGATTTCCATAGTGAGTATTCTTGGGGCTTGTTCACAGCTATCAGCTCTTGGTCTAGGAAAAGAGGTTCATTGTTTTGTCTTGAAAAACTGTCTTATAGAAGACAATTTTGTTGCTTGTTCGCTCATGGACATGTATGCCAAAAGTGGCTGTTTAGGACAATCTCAACGAATATTTAACAGGTTAAACGCGAAAGAAGTGGCTTCATGGAACGTCATGATCACAGGATTTGGTGTTCATGGACAAGGTAACAAGGCCATGGAGCTATTTGAGGAGATGCAGAGATCAGGTAAGCAGCCTGATAGGTTTACTTTTCTAGGAGTTCTTCAGGCATATTGTCATGCTGGATTGGTGTCAGAGGGGCTATATTATCTTGCTCAAATGAAAAGTTTGTACAAACTAGAGCCAGAACTCGAGCACTATGCATGTGTGATTGACATGCTCGGTAGAGCAGGCCGACTAAATGAAGCATTAAACCTCATAAATGATATGCCTGAAGAACCGGATGCTAAAATCTGGAGCTCATTGCTCAGTTCTAGTAGAACTTATGGTGATCTAGAAATGGGAGAGAAATTTGCTGGAAAATTGTTAGCACTGGAAGCAAACAAAACTGACAGCTATGTTTCAATCTCTAACTTGTATGCCACAGCAGGAAAATGGGATCATGTGCGAATGGTGAGACAGAAAATGAAGGATCTCAGCCTTCAGAAAGATGCTGGCTGCAGTTGGATTGAACTTAGAGGAAAAATCTATAGTTTTATAGCAGGCGAAAACATAAATACAAGTTCAGACGAGATTCGAAAAATGTGGAACAGATTGGAGAAACAGATTGTGGAAATTGGCTACACACCTGATTCTAGTTGTGTTCTTCATGAATTGGAAGAGGTTGAAAAGATTAAGATGTTGAAGGGACATAGTGAGAAGCTTGCAATTTCTTTTGGCTTCTTAAAGACTAAAGAAGGCACTACATTAAGAATCTCCAAGAGTCTAAGAATTTGTAGAGACTGTCACAATGCAGCCAAATTTATAAGTAAGGCTGCTGAAAGGCAGATTATTATTAGAGACAATAAACGTTTTCATCACTTCAAAAATGGGTTTTGTTCATGTGGAGATTACTGGTAGAGGAAGATCATGAAACTATTTCTTGACTTTTCATCAAGATTCTCAGACCAGTACCCAGAAAAAGGAAATGGAGCAAATTGCAAAATGGCCCCTTATGAAAAAGTTATTTTCTTTGAGATGCTGTTATTAAATTGAAAATTGAGTTAACTTAAATCAACTTAGAATCATAGACCAACAACAAATAACTTGAAGATCGAATTTTTATCAATAGGTTCCTCAGTTACTGAAAGAAAACTCATACCCATCAATCTATATTGGGAGAAGACAATGAAAAAGATATTTTAAATTTTTATTTATTTATTTGTTTAAACCTTTATAAGGTTTGGCGAGAAACTGTTTGTAGCACTGTTATTTATTTCTTTCACAATTCGAAGTTTCGTCTTCTCTTTACTGATATTGTTCGCCGTTCGGAAAATCGAGAAGATAGAACAGAAAAGTGATTTGGAGAGCGGCATGCTGTCGTCTGCGTCAGCTCCGGCCTCTCCTCCGTCGGCGTCTCATTCACAGAATTCTGCTACCCAATCTTCCCCTCGCAAACACTTAGCCGAGGCTGCAACCAATAATGACGGACTTCTTAATGCCGAGGAGAAGAAACCCGATTTATCGGATCAATTTGAAGATTTTGATCATTTCAATTCCAGTCAGAAGTACAAGAAATATGAAGCTGACTTCGCTCAACGCCTAATGGCCAAATACTTTTCCAAGAAAAACCTCTATGGAGGAAACATCTTTGAAGAGAACACAACAATCGACGGCGAGATTATAAAGTCGAGCAAGTGGCCTTGTACAAGGTCTTTTGCAGATCCTTTGCAGGGTTTTGAAGATCACAGAAGCAGCTGTTCAACATCCGCCATGGAAACCCACGGTGCTATCTCAAATGGGAAGCATGCTGTGAAGAAGAATGGATGATATGTTTTAAGAATGAATAAGATGAAGCCTGGGGCATGGGACTGTGTAGCTCAGTGCAGATGATTTTTGGGTAAATTGCAAAAACCATAACTATAGTGGTAGTTGCAATTACCCTCGAACTTTCAATCGTAAAAATTGAGCTCTCAAACCTATATGCGTGTTAAAGTTGGACCATCAAACTTACAATAGTTCTAAAAATTGAACTCCCAAATGATAAAAATAGAACCAATTTGTACAATTGTTACAATTTCTTCAATTATGTAAGTTTGGAGGTACAATTTTAACACTTGTTTAAGTTTGAAGAGTCGACTTTTATAATTGAAATTTCTATATTATAATTGCAACTACCACCATAGTTTAAAGGTGGTTTTGCAACGGTGCAATTGCAATTTGCTTTAAATTGTTTTATACACTTTTTAGCTATAGCAAATAGTCGCATTTAATTTATTTTTAATCCTGATTTTAACCTAAACAAACATTCATAATGCTCTGCAGTTGCCTTTCTTGGCAGTATGTTATATATATTAGCCATTAGGAGCAGCAAATTTACCATTGATTTATATAAAATTATCAAACAGCAGTGAAAAA 4676 38.58 MAVVAPPFSGRHRPPIIYKPTPTPTSIFKNSLLSTSTPKSYFSVSAQTQTHQSRSTNPVSQLSLLEEIFKLCEASNLNGALNFLQRVWKNNPGFDLAQRKEAMGMLLQKCGQHKDVEIGRKLDEMLSVSSQFCGDFVLNTRLITMYSICGYPSDSRLVFDRLQNKNLFQWNALVSGYVRNELYDEAIHTFIELISVTEFEPDNFTLPCLIKACTGKYDVHLGQSVHGMAVKMGLIMDLFVGNAMISLYGKCGFVDEAVKVFDKMPERNLISWNSLICGFSENGFWLEAYSAFRSLLEGGDGLIPDVATMVTLLPVCSGEGDVDMGMVIHGMAVKLGLVHELMVCNALVDMYSKCGCLSQAVILFRKIENKNIVSWNSMIGAYSREGFVYETFELLRKMWMEEEMMEVNEVTILNLLPACLEETELLSLRALHGYSLRYSFQCDELINNAFIAAYAKCGSLISAEHVFFGMNTKSVSSWNAIVGGYAQNGDPRKALDFYFQMTRLGFLPDDFSIASLLLACARLGHLQYGKEIHGFVLRNGLEMDSFVAVSLLSLYIHSSKPLYARTYFERMGNKNLVCWNAMLSGYSQNELPNEALSLFREMLSEQLETNKISIVSILGACSQLSALGLGKEVHCFVLKNCLIEDNFVACSLMDMYAKSGCLGQSQRIFNRLNAKEVASWNVMITGFGVHGQGNKAMELFEEMQRSGKQPDRFTFLGVLQAYCHAGLVSEGLYYLAQMKSLYKLEPELEHYACVIDMLGRAGRLNEALNLINDMPEEPDAKIWSSLLSSSRTYGDLEMGEKFAGKLLALEANKTDSYVSISNLYATAGKWDHVRMVRQKMKDLSLQKDAGCSWIELRGKIYSFIAGENINTSSDEIRKMWNRLEKQIVEIGYTPDSSCVLHELEEVEKIKMLKGHSEKLAISFGFLKTKEGTTLRISKSLRICRDCHNAAKFISKAAERQIIIRDNKRFHHFKNGFCSCGDYW 983
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 1000446 1006806 + XM_039024128.1 Bhi02g00048 26570

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bhi02g00048 983 Gene3D Tetratricopeptide repeat domain 535 635 IPR011990 GO:0005515
Bhi02g00048 983 Gene3D Tetratricopeptide repeat domain 648 862 IPR011990 GO:0005515
Bhi02g00048 983 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 237 271 IPR002885 -
Bhi02g00048 983 Pfam PPR repeat family 574 621 IPR002885 -
Bhi02g00048 983 Pfam PPR repeat family 473 522 IPR002885 -
Bhi02g00048 983 Pfam PPR repeat family 676 724 IPR002885 -
Bhi02g00048 983 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 166 201 IPR002885 -
Bhi02g00048 983 Pfam E motif 793 855 IPR046848 -
Bhi02g00048 983 Pfam PPR repeat 242 268 IPR002885 -
Bhi02g00048 983 Pfam PPR repeat 373 399 IPR002885 -
Bhi02g00048 983 Pfam PPR repeat 448 472 IPR002885 -
Bhi02g00048 983 Pfam PPR repeat 344 372 IPR002885 -
Bhi02g00048 983 Pfam PPR repeat 270 299 IPR002885 -
Bhi02g00048 983 Pfam PPR repeat 170 194 IPR002885 -
Bhi02g00048 983 Pfam PPR repeat 751 776 IPR002885 -
Bhi02g00048 983 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 676 710 IPR002885 -
Bhi02g00048 983 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 474 508 IPR002885 -
Bhi02g00048 983 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 575 609 IPR002885 -
Bhi02g00048 983 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN DOT4, CHLOROPLASTIC 98 419 - -
Bhi02g00048 983 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN DOT4, CHLOROPLASTIC 360 570 - -
Bhi02g00048 983 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN DOT4, CHLOROPLASTIC 431 915 - -
Bhi02g00048 983 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN DOT4, CHLOROPLASTIC 199 520 - -
Bhi02g00048 983 Gene3D Tetratricopeptide repeat domain 65 219 IPR011990 GO:0005515
Bhi02g00048 983 Gene3D Tetratricopeptide repeat domain 220 323 IPR011990 GO:0005515
Bhi02g00048 983 Gene3D Tetratricopeptide repeat domain 427 534 IPR011990 GO:0005515
Bhi02g00048 983 Gene3D Tetratricopeptide repeat domain 324 426 IPR011990 GO:0005515
Bhi02g00048 983 PANTHER OS01G0913400 PROTEIN-RELATED 360 570 - -
Bhi02g00048 983 PANTHER OS01G0913400 PROTEIN-RELATED 431 915 - -
Bhi02g00048 983 PANTHER OS01G0913400 PROTEIN-RELATED 199 520 - -
Bhi02g00048 983 PANTHER OS01G0913400 PROTEIN-RELATED 98 419 - -
Bhi02g00048 983 Pfam DYW family of nucleic acid deaminases 891 983 IPR032867 GO:0008270
Bhi02g00048 983 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 371 401 IPR002885 -
Bhi02g00048 983 TIGRFAM PPR: pentatricopeptide repeat domain 679 711 IPR002885 -
Bhi02g00048 983 TIGRFAM PPR: pentatricopeptide repeat domain 751 776 IPR002885 -
Bhi02g00048 983 TIGRFAM PPR: pentatricopeptide repeat domain 373 400 IPR002885 -
Bhi02g00048 983 TIGRFAM PPR: pentatricopeptide repeat domain 577 605 IPR002885 -
Bhi02g00048 983 TIGRFAM PPR: pentatricopeptide repeat domain 477 509 IPR002885 -
Bhi02g00048 983 TIGRFAM PPR: pentatricopeptide repeat domain 242 268 IPR002885 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bhi02g00048 - - - cmo:103494078 1731.07
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bhi02g00048 Bhi-Chr2:1000446 Bhi01g01352 Bhi-Chr1:27122740 0 dispersed
Bhi04g00208 Bhi-Chr4:5058130 Bhi02g00048 Bhi-Chr2:1000446 3.55E-10 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g410 . . . . . . . . . . Cma10g00273 . . . . . . Bhi02g00048 . . . . . . Cla06g01516 . . . . . . . . Cone13ag0018 . . . . . . . . . . . . . . Cmo10g00292 . . . . . . . . . . . . . . . . . . . . . . . Chy02g02418 Cme02g01797
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bhi02g00048 Bhi_Chr02 FPKM 6.214153 7.361572 5.246511 5.463141 8.137509 7.513375 8.363577 7.029493 6.819274 6.790905