Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bhi02g00060 GCAGGCGAGCGAACCGACCAGTTTCCCCGCCAAATTCTCAGCCATAACGGACTCCGGTGAGAAGCTTCAAGGAGAGATTGACAATGGAGGAAAGTGTGAGGGAAATCGAAATCAAAACTCTAACCGGAGAATCCTTGACCGTTTCCATCTCCGGCAACAGAACAATTGACGACCTCAAACTTCTACTCAGGCGGAATTTCCCCTCCGCAACCATTTCCCCCAATTTTCACCTCTTTTTCAAGGGTACTAAATTGAAACCCCAGAGTCAAATTAGTGCGTGTCGTATTGACCATGGCGAATTTCTAGTTCTCATTCCATTTAATAAAAAGGAGTCTTCCAAGTCTCGGCTACGTGATCAATATGAACAAGGGTCTAGTGTTTCGTGCGGAAGCTCAATTTCTCAATTCGCTGATTCTGCGTGGTCCGATATGGTGCAGGATTTATCGTATTTACATGGCTGTTCTGATGAAAGGAGGGAGGAAAATCGCCCTGAGAGTGAGAGAGGGAGTTCCGAAGTCGGAGGTGTGGATGCTGAATTGGTAGCGACATGTAGTACTAGTTCTTTTAGTTCGAAATCAAAAGGAAAAAAGGGTTTTGCTTATGATGACTTGAAAGGAAATTTAGATGATGTTTTGAGGAAATTTTCATCGTCTCCTTCCGAGGGGTTTCTAAACGAACAAACCTGTGAAAGCTTTATTAAGTATTTGGAGTCGGTGGATTGTTTGTCGGACCCACGTAATGGGAATTGTATGTTAGCAAAACAGGCTAATTCACGAAGTGGTAACAAAAGAGCTCCAAATAGCACATGTGGTTCTTCATGTCTATGTCCAGTATGGTTGAAGAAGACAATGAAGGCATTTTCTTTCTTAAATGTTTTTGCAATGTTTCTTCAATTACAAGAGGAAATTATGACTGTAAGTCGATTGGAGCAAGCAATGGACCAGCTGCGGAAACGTGGAATTACGCTTTGTATGGAGGACATACAGAATCTCTCTCTTCTATGTCCCAAGGCAGTACATTTTGCAAGTGGCAGATCGGAAGATACTTGTGTTGATAGGCTTATCATTATTATTTATTTGACTGAAAAAAATGGTCGATGGAAAGATGACATTGACAATACTGTTACTTCACATCGTTGCTGTACATCATGTAAATCGTTCACAGCACCTACGAATGTCACTCCACTGAAGAGACGGGAAAGATCCTTTAAATTTTATCTTTTGGAGGCTATCAAGTGCCATATGCTTAAACATGGAAGCAGAAGAGAGATATGTGTGCCTTTTTCTTTGGAAGCTTTAATCACACCAAATGAGACCGATGTGGATGGAAGTGAAGCAAAGAGGGGAAAAAAATGTGATACGGCTTCTAGTTCTCAATCAGACCGAAGACAATGTCATGACACTTCAAAACTCTTGCCTGAGAAAATGGTTGAACATCTTGAAAAGGGTGTTGGATCTGAGGGCCAGATAGTGCATGTTGAAGATATTGGGGCTAGGAAAGCCAATTATGTGGAAATTCCGAAGGAACTCTCAAATAATGTTGTATCAGCACTCAAATGTATTGGAGTAGCAAACTTGTATAGCCATCAGGCACAGTCAATAGAAGCCTCCCTCGCTGGAAAGCATGTTGCTGTTGCCACAATGACGTCAAGTGGAAAATCTCTGTGCTATAACTTGCCAGTTCTTGAAGCAATGTCTCAAAATGTCTCATCATGTGCTCTTTACTTATTTCCAACTAAGGCCTTAGCTCAAGATCAACTCAGAAGCTTGCTCATCATGATGAAAGGATTTAATCATAACCTTAACATTGGCGTTTATGATGGGGATACATCACAGGCTGACAGGATATTGTTGCGTGATAATGCTAGGCTGTTAATCACAAATCCAGATATGCTACATGTATCAATCCTGCCACACCACAGACAATTTAGTAGAATATTATCAAATCTTCGGTTTATAGTCATTGACGAGGCTCATACTTATAAGGGAGCATTTGGATGTCATACCGCACTAATACTACGGAGACTTCGCCGACTATGCTCTCACGTGTATGGAAGTGATCCTTCTTTTATATTCTGCACAGCAACCTCTGCAAATCCCCGTGAACATTGTATGGAACTTGGAAATCTGTCAAGCTTAGAGCTGATTGAAAACGATGGAAGTCCGTCTGCCAGAAAACTTTTCATCCTCTGGAATCCTATTATGGCCTTGAAAAATTATCAGAGAGGTATTGATTCTCCGCAGAGTACAAAAAAGAACATGACAGTTAGAAATCCAAGCCCAATTATGGACATTGCGAGGCTTTTTGCAGAAATGGTTCTGCATGGACTTCGCTGCATTGCTTTTTGTAAAACTCGTAAACTTTGTGAACTCGTTTTATGCTACACGCGTGAAATTCTCAAGGAGAGTGCACCCCATCTGGTTCAGTCTGTGTGTGCTTATCGTGCTGGATACACTGCTGAGGATAGGAGGAGAATTGAGAGTGACTTTTTTGGGGGAAACCTTTGTGGCGTTGCTGCGACAAATGCCCTTGAATTGGGTATTGATGTAGGCCATATTGATGCAACTCTGCATCTGGGTTTTCCTGGCAGTATTGCCAGCTTGTGGCAACAAGCAGGCAGGGCAGGAAGGAGAGAAAAGACTTCTCTTTCTGTGTATGTTGCATTTGAAGGGCCTCTTGACCAATATTTCGTGAAACACCCTGAAAAACTTTTTGGGAGCCCAATTGAGTGCTGCCATATTGATGCTAAAAACCAACAGGTTCTTGAACAGCATTTGTTGTGTGCTGCATATGAACACCCAGTATGTGTGGCTTATGATCAGAATTTTTTTGGTCCTGGCTTAAACACTGCCCTAATGTCTCTGAAAAATAGAGGGGATTTGATTGCTGAGTCATCATGTGGTTCATCCAAAAGTATATGGAACTATATTGGGCAAGAGAAAATGCCTTCCCGCTCAGTTAGTATCCGAGCCATTGAAGCAGAGAGATATAAAGTTGTAGACCAGCGTCAAAATGAAATTCTCGAAGAGATTGAGGAAAGCAAGGCTTTCTTTCAGGTGACTGCTGCTTCGGTATATGAAGGTGCTGTCTACATGCATCAAGGGCGAACATATCTTGTCAAAAGCTTGAATTTGTCGACTATGCTTGCTTTCTGTGAAGAAGCTGATCTAAAATATTACACAAAAACACGCGATTACACTGACATTCATGTTATTGATGGTAATTTGGCCTATCCAAGGAGAGCTCCAAATATTCCGCCCTCAAAGACAACTGCACAAGCAAATGATTGTAGAGTTACCACCACTTGGTTTGGTTTCTATCAAATACAGAAAGGAAGTAATCAAATTATTGACACCCTGAACCTCTCACTTCCAAAATATTCATACAACTCTCAGGCAGTCTGGGTTCCAGTACCACAATCAATAAAAGAAGAGGTGAAAAGGAAAAACTTTGACTTTCGTGCAGGCTTGCATGCTGCTTCACATGCTCTTCTGAATGTAGTGCCATTACGCATAATATGCAACATGTCAGACTTGGCTCCTGAATGTGCAAATCCTCATGATACTCGCTATTTTCCAGAAAGAATTCTGTTGTATGATCAACATCCTGGAGGAACTGGTCTGTCACTACAGATTCAACCCGTTTTCATAGAGCTGTTGAACGCTGCTTTTGAACTTCTCACCTCTTGCCGCTGCTTAGGAGAGACCGGCTGCCCTAATTGTGTCCAAAGTCTGACCTGCCACGAATACAATGAGGTTTTACACAAGGATGCAGCCAGTTTAATTATCAAGGGCGTTCTGGATGCAGAGAAAGCATATTGCAGGTAAAGTCTTGAATGCATGAATCAGAGAGTGAACTACTCAGACTTAGATTAAACTTATCTTTTGATGTCAGGAATTAGAAGAAAATATTCCCCATAATTCTAAACGTGAGAGGTTCAACTATAATCTGGACACGAAATATAATCTGCCTCCGTCAGAAGTGATTCACAGGTTGGTCGACTATTTCAAACATAAATTGCAGGACTATTGTATCACATTTCCGATTATTTAGTCTCGATGGTTCAAACAATTCATTATTTGAACTTTTGATCTCTGGGTCGAAAGCATGTCCTCAACTGGTAGGATAACTTGAGATGTTAGGTTTCTATATTTTTAGCATATATGAAAATTGTGCTTCAATTGGGAGTAAATTTTTGTAGTTCAA 4206 41.23 MEESVREIEIKTLTGESLTVSISGNRTIDDLKLLLRRNFPSATISPNFHLFFKGTKLKPQSQISACRIDHGEFLVLIPFNKKESSKSRLRDQYEQGSSVSCGSSISQFADSAWSDMVQDLSYLHGCSDERREENRPESERGSSEVGGVDAELVATCSTSSFSSKSKGKKGFAYDDLKGNLDDVLRKFSSSPSEGFLNEQTCESFIKYLESVDCLSDPRNGNCMLAKQANSRSGNKRAPNSTCGSSCLCPVWLKKTMKAFSFLNVFAMFLQLQEEIMTVSRLEQAMDQLRKRGITLCMEDIQNLSLLCPKAVHFASGRSEDTCVDRLIIIIYLTEKNGRWKDDIDNTVTSHRCCTSCKSFTAPTNVTPLKRRERSFKFYLLEAIKCHMLKHGSRREICVPFSLEALITPNETDVDGSEAKRGKKCDTASSSQSDRRQCHDTSKLLPEKMVEHLEKGVGSEGQIVHVEDIGARKANYVEIPKELSNNVVSALKCIGVANLYSHQAQSIEASLAGKHVAVATMTSSGKSLCYNLPVLEAMSQNVSSCALYLFPTKALAQDQLRSLLIMMKGFNHNLNIGVYDGDTSQADRILLRDNARLLITNPDMLHVSILPHHRQFSRILSNLRFIVIDEAHTYKGAFGCHTALILRRLRRLCSHVYGSDPSFIFCTATSANPREHCMELGNLSSLELIENDGSPSARKLFILWNPIMALKNYQRGIDSPQSTKKNMTVRNPSPIMDIARLFAEMVLHGLRCIAFCKTRKLCELVLCYTREILKESAPHLVQSVCAYRAGYTAEDRRRIESDFFGGNLCGVAATNALELGIDVGHIDATLHLGFPGSIASLWQQAGRAGRREKTSLSVYVAFEGPLDQYFVKHPEKLFGSPIECCHIDAKNQQVLEQHLLCAAYEHPVCVAYDQNFFGPGLNTALMSLKNRGDLIAESSCGSSKSIWNYIGQEKMPSRSVSIRAIEAERYKVVDQRQNEILEEIEESKAFFQVTAASVYEGAVYMHQGRTYLVKSLNLSTMLAFCEEADLKYYTKTRDYTDIHVIDGNLAYPRRAPNIPPSKTTAQANDCRVTTTWFGFYQIQKGSNQIIDTLNLSLPKYSYNSQAVWVPVPQSIKEEVKRKNFDFRAGLHAASHALLNVVPLRIICNMSDLAPECANPHDTRYFPERILLYDQHPGGTGLSLQIQPVFIELLNAAFELLTSCRCLGETGCPNCVQSLTCHEYNEVLHKDAASLIIKGVLDAEKAYCR 1247
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 1175541 1202325 + XM_039022380.1 Bhi02g00060 26582

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bhi02g00060 1247 ProSiteProfiles Ubiquitin domain profile. 6 77 IPR000626 GO:0005515
Bhi02g00060 1247 SMART helicmild6 770 851 IPR001650 -
Bhi02g00060 1247 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 545 868 IPR027417 -
Bhi02g00060 1247 CDD DEXHc_Hrq1-like 498 679 - -
Bhi02g00060 1247 Gene3D - 7 95 - -
Bhi02g00060 1247 Coils Coil 271 291 - -
Bhi02g00060 1247 MobiDBLite consensus disorder prediction 413 429 - -
Bhi02g00060 1247 PANTHER ATP-DEPENDENT HELICASE HRQ1 19 1246 - -
Bhi02g00060 1247 MobiDBLite consensus disorder prediction 411 438 - -
Bhi02g00060 1247 Pfam DEAD/DEAH box helicase 500 670 IPR011545 GO:0003676|GO:0005524
Bhi02g00060 1247 MobiDBLite consensus disorder prediction 127 146 - -
Bhi02g00060 1247 CDD Ubl_ubiquitin_like 8 77 - -
Bhi02g00060 1247 SUPERFAMILY Ubiquitin-like 5 77 IPR029071 -
Bhi02g00060 1247 Pfam MrfA Zn-binding domain 1132 1214 IPR018973 -
Bhi02g00060 1247 SMART ultradead3 494 700 IPR014001 -
Bhi02g00060 1247 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 736 892 IPR001650 -
Bhi02g00060 1247 MobiDBLite consensus disorder prediction 127 144 - -
Bhi02g00060 1247 CDD SF2_C_Hrq 700 860 - -
Bhi02g00060 1247 Gene3D - 470 684 IPR027417 -
Bhi02g00060 1247 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 506 687 IPR014001 -
Bhi02g00060 1247 Pfam Helicase conserved C-terminal domain 743 850 IPR001650 -
Bhi02g00060 1247 Gene3D - 726 897 IPR027417 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bhi02g00060 - - - bhj:120070581 2481.06
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bhi02g00060 Bhi-Chr2:1175541 Bhi02g00065 Bhi-Chr2:1175541 0 dispersed
Bhi02g00059 Bhi-Chr2:1175541 Bhi02g00060 Bhi-Chr2:1175541 0 tandem
Bhi02g00060 Bhi-Chr2:1175541 Bhi02g00061 Bhi-Chr2:1175541 0 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g427 . . . . . . . . . . . Cma11g00226 . Car11g00202 Sed08g0297 . Cpe04g01445 Bhi02g00060 Tan09g2007 Cmetu02g0001 . . . . Cla06g01524 Cam06g1681 Cec06g1743 Cco06g1741 Clacu06g1648 Cmu06g1595 Cre06g2406 . . Cone13ag0024 . . . . . . Blo15g00344 . . . . . . . . Cmo11g00229 . . . . . . . . . . . . . . . . . . . . Lsi06g01393 Csa01g00335 Chy02g02407 Cme02g01807
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003378 1 12 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 2 1 1 4 4 1 49
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bhi02g00060 Bhi_Chr02 FPKM 32.788433 34.756935 27.282892 28.192266 26.546309 25.387571 29.621817 28.593872 26.26536 26.338856