Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bhi02g00080 GTTAGTTGAAGCTTTTGATTCTCCAAAAGCTTTCAAGCCATGGAATTTAATACCTACAATGATCCATTACACAAAATTCTCTTTCAATGGGAATGTTACTTGCCTCGACAGCCAAAGATTGTACTCTTAGCACTTCTGATCTTCACAGCTTTCTGTTCAACTGGGGCATACGATCCATTGGATCCAAATGGAAACATAACAATCAAATGGGATGTAGTCTCTTGGACGCCGGATGGATATGTCGCTGTTGTGACAATGAACAATTTTCAGATGTACCGCCATATCAATTCACCAGGATGGACTCTAGGCTGGTCGTGGGCCAAGAAAGAAGTAATATGGTCAATGGTGGGATCTCAGACAACGGAACAAGGAGATTGTTCCAAGTTCAAAGGAAATGTTCCTCACTGTTGCAAGAAAAGCCCAGTAGTCGTTGATTTGCTCCCTGGTGTTCCTTACAATCAACAATTCTCCAACTGCTGCAAGGGTGGGGTATTGGCATCCTGGGGACAGGATCCGGCAGGATCAGTCTCCGCCTTTCAAGTGAGTGTTGGGCTAGCCGGCACTTCAAACAAAACTGTAAAATTGCCCAAGAACTTCACTCTGCTCGGTCCAGGACCAGGATACACATGTGGACCTGCAAAGGTTGTGCCTTCTACAGTCTTCCTTACTCCTGATCGCCGGAGGAAAACTCAAGCACTGATGACATGGAATGTAACCTGCACTTATTCACAATTTCTGGCGTCTAAGAACCCAACTTGCTGCGTATCACTCTCGACTTTCTACAATGATACGATCACTTCTTGCCCAACGTGTGCGTGTGGCTGCCAGAACAAACATAATTGTATAAAGAGTGACTCAAAGCTACTGCACAAGGATGGAATAAACACTCCTAAAAAGGATAATACACCTTTACTACAATGCACCCATCACATGTGTCCTGTTCGAGTACACTGGCATGTAAAGATTAATTACAAGGATTACTGGCGCGTGAAGGTTGCTGTAACTAACTTCAACTATAGGATGAACTATACGCTGTGGACACTGGCAGTGCAGCATCCAAATCTGAACAATGTAACTCAAGTCTTCAGTTTTGACTACAAGCCCCTTGTTCCCTATGAATCCATCAATGATACTGGCATGTTCTATGGCATGAAATTCTACAATGATCTATTAATGGAAGCAGGGCCATTTGGAAATGTACAATCTGAAGTACTCATGAAAAAGGACAAGGATACCTTTACCTTCAAGCAGGGTTGGGCATTTCCTAGAAAAGTATACTTCAATGGCGACGAATGTCAAATGCCACCGCCAGAATCATACCCATTTCTACCGAACTCTGCACCTGGAGGCTCCGGTGCAGTTACCAAATTCACAACCTCCTTGCTTTTGGTACTCTGGTATTTGTGGTGATCAGTAATCATTCTTTTCATTCTTGATCAACTTCAAAGACCTACACATGTTCATAATTCAAGGGAGAAACTGCAGATCTGCAACGAACACAGGTATACATGCCAGATATTATTGGTCATAGAATACATACACTCGGCAGATAAATCAATGTTTGTTGTTTTTGAGTTGTCTGAAGTTAACTATCTTGAGTAAAAATATCCTCTCTTACCAATGTGCTTCACAGAAAATTCAGTATAGACATGATTCTATAGTGCAAATCTTATTTTTTATTCTGTAGTCTTGACTCCGGTTAAGTAACTGAAATGATTCCATCATGTATCAACTTAAATAACAAAGAAATTATGCAGAAAACAGGCATTCTATGGAAAATTTGAACTGTTTCATAAGTTATTATACTGAGAGCGACAAATACTTTTTTAATCATTATACAAATAAAATGACTGAATGTATAACTTAACTATTTGTACAACACCATTCGCTCCAAATCTAATCAAGAATGAGGTTTGAGTTAAATAA 1926 40.39 MEFNTYNDPLHKILFQWECYLPRQPKIVLLALLIFTAFCSTGAYDPLDPNGNITIKWDVVSWTPDGYVAVVTMNNFQMYRHINSPGWTLGWSWAKKEVIWSMVGSQTTEQGDCSKFKGNVPHCCKKSPVVVDLLPGVPYNQQFSNCCKGGVLASWGQDPAGSVSAFQVSVGLAGTSNKTVKLPKNFTLLGPGPGYTCGPAKVVPSTVFLTPDRRRKTQALMTWNVTCTYSQFLASKNPTCCVSLSTFYNDTITSCPTCACGCQNKHNCIKSDSKLLHKDGINTPKKDNTPLLQCTHHMCPVRVHWHVKINYKDYWRVKVAVTNFNYRMNYTLWTLAVQHPNLNNVTQVFSFDYKPLVPYESINDTGMFYGMKFYNDLLMEAGPFGNVQSEVLMKKDKDTFTFKQGWAFPRKVYFNGDECQMPPPESYPFLPNSAPGGSGAVTKFTTSLLLVLWYLW 456
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 1372577 1375876 + XM_039022940.1 Bhi02g00080 26602

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bhi02g00080 456 Pfam COBRA-like protein 67 230 IPR006918 GO:0010215|GO:0031225
Bhi02g00080 456 PANTHER PROTEIN COBRA 26 453 IPR006918 GO:0010215|GO:0031225
Bhi02g00080 456 PIRSF COBRA 18 456 IPR006918 GO:0010215|GO:0031225
Bhi02g00080 456 PANTHER COBRA-LIKE PROTEIN 26 453 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bhi02g00080 - - - cmo:103494059 949.503
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bhi01g02251 Bhi-Chr1:54127679 Bhi02g00080 Bhi-Chr2:1372577 0 dispersed
Bhi02g00080 Bhi-Chr2:1372577 Bhi05g01752 Bhi-Chr5:56119304 4.85E-139 dispersed
Bhi02g00080 Bhi-Chr2:1372577 Bhi02g00081 Bhi-Chr2:1375725 0 tandem
Bhi02g00080 Bhi-Chr2:1372577 Bhi08g01067 Bhi-Chr8:34729657 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g445 . . Bda06g00512 Bda15g00631 . . . Bma12g00957 . . Cma10g00288 Cma11g00220 Car10g00270 Car11g00198 Sed08g0289 Cpe20g00086 Cpe04g01448 Bhi02g00080 Tan09g2022 Cmetu02g1379 . Hepe09g0286 . . Cla06g01530 Cam06g1687 Cec06g1749 Cco06g1747 Clacu06g1654 Cmu06g1601 Cre06g2413 . . . . Lsi02g00135 Csa01g00618 . . . . . . Bpe07g00746 . . Bma08g00250 . Cmo10g00306 Cmo11g00223 . . . . . Cpe18g00714 . . . . . . . . . . . . . . Lsi06g01401 Csa01g00340 Chy02g02402 Cme02g01812
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Bhi02g00081 CCT,ECH 48 447 COBRA Gene Family AT5G60920 80.5 5.6e-210 727.6
Bhi01g02252 . 44 445 COBRA Gene Family AT5G60920 76.9 1.6e-201 699.5
Bhi01g02251 . 31 426 COBRA Gene Family AT5G60920 68.5 2.1e-180 629.4
Bhi02g00080 . 55 452 COBRA Gene Family AT5G60920 69.1 3.5e-180 628.6
Bhi08g01067 CCT,ECH 37 433 COBRA Gene Family AT5G60920 59.7 6.5e-150 528.1
Bhi01g01581 . 45 440 COBRA Gene Family AT5G60920 53.3 2.4e-128 456.4
Bhi02g00081 CCT,ECH 18 451 COBRA Gene Family AT3G02210 73.5 2.7e-205 712.2
Bhi01g02252 . 14 453 COBRA Gene Family AT3G02210 73.2 9.5e-203 703.7
Bhi01g02251 . 5 428 COBRA Gene Family AT3G02210 66.7 8.7e-180 627.5
Bhi02g00080 . 27 453 COBRA Gene Family AT3G02210 66.0 2.8e-178 622.5
Bhi08g01067 CCT,ECH 12 417 COBRA Gene Family AT3G02210 59.3 6.3e-154 541.6
Bhi01g01581 . 15 445 COBRA Gene Family AT3G02210 54.0 2.0e-139 493.4
Bhi02g00081 CCT,ECH 18 446 COBRA Gene Family AT3G29810 75.2 7.1e-203 704.1
Bhi01g02252 . 28 448 COBRA Gene Family AT3G29810 72.7 1.9e-195 679.5
Bhi01g02251 . 14 428 COBRA Gene Family AT3G29810 66.0 2.2e-175 612.8
Bhi02g00080 . 38 436 COBRA Gene Family AT3G29810 66.9 1.8e-174 609.8
Bhi08g01067 CCT,ECH 18 434 COBRA Gene Family AT3G29810 57.2 4.1e-150 528.9
Bhi01g01581 . 27 443 COBRA Gene Family AT3G29810 53.9 1.5e-136 483.8
Bhi02g00080 . 32 363 COBRA Gene Family AT5G15630 83.1 1.0e-177 620.2
Bhi01g02251 . 9 339 COBRA Gene Family AT5G15630 82.2 1.3e-175 613.2
Bhi02g00081 CCT,ECH 31 361 COBRA Gene Family AT5G15630 73.2 2.4e-150 529.3
Bhi01g02252 . 29 358 COBRA Gene Family AT5G15630 69.4 1.8e-145 513.1
Bhi08g01067 CCT,ECH 15 338 COBRA Gene Family AT5G15630 62.5 9.6e-131 464.2
Bhi02g00081 CCT,ECH 18 224 COBRA Gene Family AT5G60950 57.7 2.1e-64 243.0
Bhi01g02252 . 10 220 COBRA Gene Family AT5G60950 56.8 8.7e-63 237.7
Bhi01g02251 . 7 207 COBRA Gene Family AT5G60950 55.0 1.7e-58 223.4
Bhi02g00080 . 51 231 COBRA Gene Family AT5G60950 57.5 8.5e-58 221.1
Bhi01g01581 . 18 429 COBRA Gene Family AT1G09790 59.0 4.1e-150 528.9
Bhi01g02252 . 16 428 COBRA Gene Family AT1G09790 53.1 8.3e-135 478.0
Bhi02g00080 . 41 434 COBRA Gene Family AT1G09790 53.4 1.0e-132 471.1
Bhi02g00081 CCT,ECH 32 435 COBRA Gene Family AT1G09790 53.2 6.6e-132 468.4
Bhi01g02251 . 3 410 COBRA Gene Family AT1G09790 51.1 4.0e-129 459.1
Bhi01g01058 . 34 643 COBRA Gene Family AT4G16120 66.7 2.4e-255 879.0
Bhi09g01934 . 45 661 COBRA Gene Family AT4G16120 51.6 1.4e-199 693.7
Bhi01g01058 . 6 649 COBRA Gene Family AT3G16860 61.8 5.7e-241 831.2
Bhi09g01934 . 43 650 COBRA Gene Family AT3G16860 51.1 2.1e-190 663.3
Bhi01g01058 . 10 630 COBRA Gene Family AT5G49270 61.9 9.9e-241 830.5
Bhi09g01934 . 35 645 COBRA Gene Family AT5G49270 50.6 2.7e-190 662.9
Bhi09g01934 . 12 667 COBRA Gene Family AT3G20580 61.3 1.8e-250 862.8
Bhi01g01058 . 27 645 COBRA Gene Family AT3G20580 53.9 6.6e-208 721.5
Bhi09g01934 . 43 637 COBRA Gene Family AT4G27110 62.1 2.3e-229 792.7
Bhi01g01058 . 24 645 COBRA Gene Family AT4G27110 52.2 5.0e-200 695.3
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001485 1 3 2 1 2 2 4 2 2 1 2 2 4 3 3 4 3 2 4 2 3 2 3 3 3 3 2 2 2 1 73
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bhi02g00080 Bhi_Chr02 FPKM 0.157943 0.0 0.0 0.070795 0.083324 0.0 0.0 0.059472 0.055571 0.0