Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bhi02g00093 CCGTTTCAAAGATCCAAAAACCATTTTCCCGCTTGAATCATCAAATACAAAGCCCTCAAATCCCTTCTTCTTCCCTTCATTCTTCATCGCTTCTTCTTTATCCTCTCGCCGGAGCTCTCTCTCAGTTCATACCAACCTTTTCTTTCTGATCCTCTATTGTCGAGCAATGGCGGACGCACCAACCGTTGGCGGCATATCAAACATTTTGTCTAATCCATCCCCAGACTCCCCCTCCGATGTCCCCGATGTCGTGGTTCAGGTCATCGATCTCAAGGCGACGGGAAATCGCTACATGTTTACTGCTAGCGATGGGGATATGAAGCTTAAAGCTATTCTTCCATCAAACCTGACGTCTGATGTCATTTCTGGAAACATTCAAAATTTGGGGCTTATTCGCGTTCTTGACTACTCTCTCAATGACATTCCGAACAAGCAAGAAAAGTATTTAATCGTGACGAAATGTGAGGTTGTTTCTCCTGCTCTAGAAAAGGAGGTAAAAACTGAGGTTAAGAAAGAGGAAACAGGTATTATTTTGAAACCGAAGCTAGAGGATGATGATAAGAGCACATTTAACAATGGATCTGGTATTCTTTTAAAGCCAAAGCAAGAATTGGTTGCCAAATCAGCTGCTCAGATTGTACACGAGCAGCAAACGAATATGGCACCAGCTGCACGTATGTCCATGACAAGGCGAGTTCATCCCCTTGTCTACTTAAATCCTTATCAGGGAGATTGGACCATCAAAGTCCGTGTTACGGATAAGGGAAACCTGCGTACATACAAGAATGCTCAAGGAGAAGGTTATGTTTTTAACGTAGTGTTGACAGATGAAGATGGTACACAAATACAGGCAACGATGTTCAATGATGCTGCAAGGAAGTTCTATGAGAAATTTTCCCTTGGCAAAGTTTACTACATTTCCAGGGGGGCTTTGAAAGTTGCTAATAAGAAATTTAAGACAGTTCAAAATGATTATGAAATGACTTTGAATGTGAATTCTCAAGTAGATGAGGTTAGCAGTGAAGCTGCGTTTGTTCCTGAAACAAAATATAATTTTGTCAAGATTGATATGTTAGGTCCGCACGTGAATGGAAGGGACCTTGTTGATGTTATTGGAGTTGTTCAAAGTGTTTCTCCTACAATGAGCATTCGAAGGAAAATCAACAATGAGACAGCTCCAAAACGTGATGTAACCATTGCTGATGAGACGAAGAAGACAGTTGTGATATCTTTGTGGAATGATCTTGCGACCACTGTGGGGCAGGAGTTGCTTGACATTGCCGACCAATCTCCAATAATTGCAGTGAAGTATCTTAGAGTTGGGGACTTTCAAGGTGTATCTTTGTCCACAATAAGCAGAAGCTCAATTATGATAAATCCAGACATAAAGGAAGCACATGATTTGAGATCCTGGTATGACTCTGAAGGAAAAGCCGTATCCATGTCTTCTGTAAGCTCTGGCCTGAGCCCATCAACCAAGAGTGGTACCAGGTCCATGTACTCTGACCGTATCTCCCTATCTCATATACTCCAAAACAAATCTTTGGGAGAAGAAAAGCCCATGTTCTTCAGCATCAGAGCATATGTTAGCTTTATCAAGCCTGATCAAACAATGTGGTATCGGGCTTGCAAGACATGCAAAAAGAAGGTGACTGAAGCGATTGGATCTGGATATTGGTGCGACAATTGTCAGAAAAATGATGAAGAATGCAGTTTAAAGTACATAATGGTCGTGAGAGTTTCTGATGCAAGTGGTGAAGCTTGGTTCTCTACATTCAATGAAGAAGCAGAGAGAATCATTGGATGCTCTGCCGATGAGCTTGACCAACTCAAATCACAGGTTGGAGAGGAGAATTCATATCAACTGAAACTCAAACAAGCCACTTGGGTTCCCCATTTATTTCGAGTTAGCGTTTCTCAGAATGAGTACAACAATGAGAAGAGACAAAGGATCACTGTCAGGTCTGTTGCTCCAGTTGACTTTGCCGCTGAATCCAGATTTTTGCTAGAAGAGATAGCAAAAATGAAAGCTTCCTAAGAAGGGTTTATTGCAAAGCCATGTCTATCTTAGGCAACTTTAGGAATTAAGTAGAAAAATGTAAATTAAAGCATCAATTTAACAGCTATTTTCCTTTTCTGTAGTAGTAGAGACCTTAGAGGAATGTTTTGTTATTTACCTTACCAGTTGGAAGCATGTTTTTGCATATACTA 2211 41.02 MADAPTVGGISNILSNPSPDSPSDVPDVVVQVIDLKATGNRYMFTASDGDMKLKAILPSNLTSDVISGNIQNLGLIRVLDYSLNDIPNKQEKYLIVTKCEVVSPALEKEVKTEVKKEETGIILKPKLEDDDKSTFNNGSGILLKPKQELVAKSAAQIVHEQQTNMAPAARMSMTRRVHPLVYLNPYQGDWTIKVRVTDKGNLRTYKNAQGEGYVFNVVLTDEDGTQIQATMFNDAARKFYEKFSLGKVYYISRGALKVANKKFKTVQNDYEMTLNVNSQVDEVSSEAAFVPETKYNFVKIDMLGPHVNGRDLVDVIGVVQSVSPTMSIRRKINNETAPKRDVTIADETKKTVVISLWNDLATTVGQELLDIADQSPIIAVKYLRVGDFQGVSLSTISRSSIMINPDIKEAHDLRSWYDSEGKAVSMSSVSSGLSPSTKSGTRSMYSDRISLSHILQNKSLGEEKPMFFSIRAYVSFIKPDQTMWYRACKTCKKKVTEAIGSGYWCDNCQKNDEECSLKYIMVVRVSDASGEAWFSTFNEEAERIIGCSADELDQLKSQVGEENSYQLKLKQATWVPHLFRVSVSQNEYNNEKRQRITVRSVAPVDFAAESRFLLEEIAKMKAS 623
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 1778198 1781690 - XM_039022790.1 Bhi02g00093 26615
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bhi02g00093 623 Gene3D - 174 282 IPR012340 -
Bhi02g00093 623 SUPERFAMILY Nucleic acid-binding proteins 178 285 IPR012340 -
Bhi02g00093 623 SUPERFAMILY Nucleic acid-binding proteins 5 107 IPR012340 -
Bhi02g00093 623 CDD RPA1_DBD_B 312 418 - -
Bhi02g00093 623 Pfam Replication factor-A C terminal domain 467 613 IPR013955 -
Bhi02g00093 623 Pfam OB-fold nucleic acid binding domain 190 275 IPR004365 GO:0003676
Bhi02g00093 623 PANTHER REPLICATION FACTOR A 1, RFA1 8 618 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Bhi02g00093 623 Pfam Replication protein A OB domain 308 404 IPR031657 -
Bhi02g00093 623 TIGRFAM rpa1: replication factor-a protein 1 (rpa1) 6 619 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Bhi02g00093 623 SUPERFAMILY Nucleic acid-binding proteins 295 424 IPR012340 -
Bhi02g00093 623 MobiDBLite consensus disorder prediction 1 24 - -
Bhi02g00093 623 Gene3D - 290 431 IPR012340 -
Bhi02g00093 623 Coils Coil 538 558 - -
Bhi02g00093 623 Gene3D - 432 620 IPR012340 -
Bhi02g00093 623 PANTHER REPLICATION PROTEIN A 70 KDA DNA-BINDING SUBUNIT B-RELATED 8 618 - -
Bhi02g00093 623 Gene3D - 6 112 IPR012340 -
Bhi02g00093 623 CDD RPA1_DBD_C 455 619 IPR013955 -
Bhi02g00093 623 CDD RPA1_DBD_A 179 282 - -
Bhi02g00093 623 Pfam Replication factor-A protein 1, N-terminal domain 6 103 IPR007199 GO:0003677|GO:0005634|GO:0006260
Bhi02g00093 623 SUPERFAMILY Nucleic acid-binding proteins 446 620 IPR012340 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bhi02g00093 Bhi-Chr2:1778198 Bhi06g01594 Bhi-Chr6:46364185 2.95E-99 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bhi02g00093 K07466 - csv:101208545 1110.9