Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bhi02g00098 GATCCTTTGTCTCTGTATTCCACATTTTTCTTTCTCTAATCAATCTTAATCCGTCGTGCTTTGCATATCCCATAATCGGCCTTCCATTTTCCTTTGTTCTTTGTTCATTTTTCACTCACATACGTTTTAGTTTCCTCTTGGAAATTGTTTATGGGGGAAGATGTGTGAAAACCCCTGGAAAGTGAAGCTTAGTATTGAGTGTTGTTCAATTTCTGCAGCTGATAATTGATGGAAAGTTTGTTGAGTGCACGAATCAAACCATTACCTACTCATTGTAGAAAAATTCATTCCTTATTTCGTCCTAAGTTGTTCTTGCAATTTTCTAGAAGATTGGATAAATGTCATATGGAGATGGGGAAATGTCGTACGTCATTCAATCCATTTGCCGCATCAGTTCAGCCAATAGATAAACTTTCTCAATTCAACAACACATCACCATCCAAAGAGGTGTTGGAACTGTGGAGAGGTGCAAATGCAGTATGCTTCGATGTTGATAGCACAGTTTGTGTAGACGAGGGCATTGATGAATTAGCAGATTTCTGTGGATCCGGAGAGGCGGTTGCAGAATGGACTGCTAGGGCAATGGGTGGTTCTGTTCCATTTGAGGATGCCTTGGCTGCTAGACTATCTTTGTTTAACCCTTCTCTTTCACAAGTTGAGGAATTTCTTGCTAAGAGACCTCCAAGGCTTTCTCCAGGTATTGATGAACTAGTTAAAAAGCTAAAAGCTAACAACATTGATGTATATCTGATTTCGGGAGGCTTTCGTCAAATGATCAATCCTGTTGCATCAATTCTTGGGATTCCACATGAGAATATTTTTGCCAACCAATTGCTTTTTGGAAGCAATGGTGAATTTATGGGGTTTGACAAGAATGAGCCTACTTCAAGGAGTGGGGGAAAAGCAATTGCAGTACAACAATTGAGGAAGGCTCGTGGATACAAGACATTGGTCATGACTGGGGACGGTGCAACTGATCTTGAGGCCTGTAAACCAGGAGGCGCTGACTTGTTTATATGCTATGCTGGCGTTCAACTTCGAGAAAATGTCGCTGCAAAAGCTGACTGGCTGGTTTTCAGTTTTGTAGATATAATCAGCTCCCTTGACTAACTCGTATTTTTTCAGAACTGCCCTCATTTTGATTTTTATATCTTTTTTGTTATTCTTATCTTGTATTGCTTGCCTATTCTTTATGGCTGCAGACATTTGCATTCTACGCATAACTATTCTAATCTTTTGGGGAAAAAGAGCCTCCATTATCATGTTTGTGAAACTGAAAAGTATAAACAAGGATTGGAATTCTGAAGCATCTTTCTTCTCAATACACAAAATTTACCTTTTTACAGTTG 1349 39.29 MESLLSARIKPLPTHCRKIHSLFRPKLFLQFSRRLDKCHMEMGKCRTSFNPFAASVQPIDKLSQFNNTSPSKEVLELWRGANAVCFDVDSTVCVDEGIDELADFCGSGEAVAEWTARAMGGSVPFEDALAARLSLFNPSLSQVEEFLAKRPPRLSPGIDELVKKLKANNIDVYLISGGFRQMINPVASILGIPHENIFANQLLFGSNGEFMGFDKNEPTSRSGGKAIAVQQLRKARGYKTLVMTGDGATDLEACKPGGADLFICYAGVQLRENVAAKADWLVFSFVDIISSLD 293
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 1900642 1904484 - XM_039022451.1 Bhi02g00098 26620

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bhi02g00098 293 SUPERFAMILY HAD-like 72 292 IPR036412 -
Bhi02g00098 293 PANTHER BNAA06G12800D PROTEIN 1 293 - -
Bhi02g00098 293 Gene3D - 69 123 IPR023214 -
Bhi02g00098 293 PANTHER PHOSPHOSERINE PHOSPHATASE 1 293 - -
Bhi02g00098 293 TIGRFAM serB: phosphoserine phosphatase SerB 76 277 IPR004469 GO:0006564|GO:0036424
Bhi02g00098 293 Pfam haloacid dehalogenase-like hydrolase 82 256 - -
Bhi02g00098 293 Gene3D - 140 292 IPR023214 -
Bhi02g00098 293 CDD HAD_PSP_eu 83 285 - -
Bhi02g00098 293 TIGRFAM HAD-SF-IB: HAD phosphoserine phosphatase-like hydrolase, family IB 83 255 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bhi02g00098 K01079 serB, PSPH; phosphoserine phosphatase [EC:3.1.3.3] - csv:101208305 536.184
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bhi02g00098 Bhi08g01132 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bhi02g00097 Bhi-Chr2:1900642 Bhi02g00098 Bhi-Chr2:1900642 0 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g605 Blo04g00783 . . . . . . . . . Cma10g00213 Cma11g00120 Car10g00199 . Sed08g0273 . . Bhi02g00098 Tan09g2046 Cmetu02g0607 . . . . Cla06g01565 Cam06g1729 Cec06g1790 Cco06g1790 Clacu06g1697 Cmu06g1643 Cre06g2454 . . Cone13ag0051 Cone19ag0056 Lsi02g00094 . . . . . . Bda14g00864 . Bpe15g00591 . . Sed08g2093 Cmo10g00229 Cmo11g00192 . . . . . Cpe18g00776 Bhi08g01132 Tan05g2414 . Lac10g0123 Hepe07g2487 . . . . . . . . . Lsi06g01440 Csa01g00265 Chy02g02468 Cme02g01855
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006561 1 2 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 7 1 1 37
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bhi02g00098 Bhi_Chr02 FPKM 13.253656 13.219193 27.277273 28.824299 13.273708 13.09591 15.617458 9.150778 8.749335 9.416278