Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bhi02g00111 GCATGAATGAAGATTAGTCGGGAGAAAATACTAAAAAGAATAGGCAAAGACCAGAGGATACCTAAAGGGAAAAGAAGGAGATGAAATAATAGGTGGAATGGTTTGAGCGTTGGAACGAACTAAACCAAGTTCCGCTACAACTACAAGAACGTGGAGCATCAATCTCATCTGGCCGCCGGAGCTCTCTTCTGTCTTGTCTTCTCCAACTATCCAAAACCCCAATTTCAGAAAATGGTTCCCAACTTCTACAACTAGATTTCCCCTTCACTTCCATCTCCATCAATGCCTTACTCAACCATCTTCTTCCATTCCTATATCAGGACTTCCATGTCCATTTCCTTCAGACCAACTTCTTCTCCATTTTCCATATCTTCAACCCGCTTCAGACCTTGGATTCCTCATCTTTTCACCCGGAGGAACCTATCCATGGGGTTTGTCAACTTCCAGTCTCGTCCGGGGTTGGTGTCTGGTGTTCGTTGTACGAACCAATCCAAGTGGGTTGAAGTTGCCTTGAGGGAGAAACAGCAGGACCATGTCAAGGGTTTCCGGCAGAGAAATGTCGCCTTCCCGTTTTGGCAGCATCAGCCTTGCTCCAATTATGGTCGCTTTGCGTATGAGGATGTTTCTAGTGATGATTCTGATGTCGAATTTGGGTCTCCGCAGGGGCAAAGGAGTTCATCAACCCTCGATAACGTAGATGAGTGGAGATGGAAGTTAACCATGCTTCTACGCAACAATGATGAACTAGAAGTAGTGTCAAGGGAGAAAAAGGATAGACGTGATTTTGAGCAACTTTCAGCCTTGGCAACCAGAATGGGTTTGCATAGCCGTCAATATGCAAAAGTTGTTGTATTTAGTAAAGATCCTCTGCCGAATTACAGACCGGACCTGGATGATAAGCGACCACAGAGAGAAGTGGTCTTACCTTTTGGGGTCCAAAGGGAAGTTGAAGGTCATCTAAGATTGTACCAATCTTCTCACAAGTCTGTGTCAAGAGGATGTTTTTCAAATAGTTACTTACCAAAAGATGGCGTTGCTGAAAACTATGCTAACAATAATGGACCATTTGAGCACCAGGAACCTTTGACAACACAAAGTGTTGTCATGGAGAAAATTCTTCGCCGCAAAAGTTTGCAACTGAGGAATCAGCAGCAGGATTGGCAGGAATCTCCTGAGGGCCAAAAAGTGATAGAATTTCGCAAAAGTCTCCCTGCATTCAAAGAGAGGGAAGCATTGTTAAAGGCCATTTCAGAAAATCAGGTAGTTGTTGTCTCAGGTGAAACTGGTTGTGGCAAAACCACACAGCTTCCTCAGTATATTTTAGAATCTGAGATTGAAGCTGCGCGTGGAGCTTCTTGTAGTATTATCTGTACTCAGCCTAGACGTATTTCTGCCATGGCTGTTTCTGAAAGAGTTGCTGCAGAACGTGGAGAGAAACTGGGAGAGTCTGTTGGTTATAAAGTTCGGCTGGAGGGTATAAAAGGAAGGGAAACTCGTCTTCTCTTTTGCACTACTGGTGTACTATTGAGAAGATTGCTCGTTGACAGAAATTTGAAAGGTGTAACTCATGTTATTGTTGATGAGATTCATGAACGTGGAATGAATGAAGATTTTCTTGTTATTGTCCTGAAAGATCTCCTTCCTCGACGGCCTGATTTGAGGTTGATCTTGATGAGCGCAACTCTGAATGCAGAACTTTTTTCTTCTTATTTTGGTGGTGCTCCAACAATGCATATCCCTGGTTTTACATACCCAGTTCGTGCACACTTTTTGGAGAATATTCTTGAGATTACTGGCTATCGATTGACTCCATACAATCAAATTGATGATTATGGTCAAGAAAAGGCATGGAAAATGCAAAAACAAGCTCCAGCTCTAAAGAAAAGGAAGACCCAGATTGCTTCATCTGTTGAGGATGCATTTGAGGCTGCTAACTTTTCAGCATACAGTCCTCGGACTCGGGAGTCTCTATCCTGTTGGAATCCTGACTCAATTGGTTTCAACCTCATTGAGCATGTCCTCTCTTACATTGTCAAGAGGGAGAGGCCAGGTGCTATATTAGTTTTTATGACCGGTTGGGATGATATAAACTCTTTAAAGGACCAGCTCCAGTCTCATCCTTTATTAGGGGATCCTAGCAGAGTCTTGCTCCTTGCATGTCATGGTTCGATGGCCAGCTCTGAGCAGAAATTGATATTTGATAAACCTGAAGATGGAGTTAGGAAAATAGTCCTAGCTACGAACATGGCAGAGACTAGTATCACCATCAATGACGTGGTTTTTGTTGTTGACTGCGGAAAAGCAAAGGAGACATCCTATGATGCACTAAATAACACTCCTTGTTTGCTTCCATCCTGGATCTCCAAGGCTGCTGCACGACAAAGAAGAGGTAGGGCTGGTCGTGTTCAACCTGGCGAGTGTTACCATCTCTATCCCAGATGTGTATATGACGCTTTTGCTGATTATCAACTGCCAGAACTTTTAAGGACCCCATTGCAGTCTTTGTGTTTGCAAATCAAGAGTCTGCAACTTGGAAGTATATCAGACTTCCTATCAAATGCATTGCAGCCGCCAGAGCCTTTATCGGTTCAAAATGCCATAGACTATTTGAAGACAATTGGAGCTCTGGATAAGAAAGAAAATCTGACAGTTCTCGGGCAACACTTGTCAGTTCTTCCAGTTGAGCCTAAACTAGGAAAAATGCTTATATTAGGAGCTATTTTCAACTGTCTTGATCCAATTATGACTATTGTTGCTGGTCTTAGTGTCAGAGATCCTTTTCTTATGCCATCTGATAAAAAGGATTTAGCCGAATCAGCAAAAGCACAGTTTGCTGCACGTGACTGTAGTGATCATCTTGCCTTAGTTCGAGCTTATCAGGGTTGGAGAGATGCTGAAAAACAGCAATCTGGTTATGAGTACTGTTGGAGAAACTTTCTCTCCATGCAAACTCTTAGAGCCATTGACTCTTTGAGAAAGCAGTTCTTCTTTTTGCTGAAGGACACTGGTCTAGTTGATTATGATGCAGAAAAATGCAATATCTCAAACCACGATGAGCACTTAATTCGTGCAGTCATCTGTGCTGGTTTGTTTCCCGGAATTTGCTCTGTTGTGAACAAAGAGAAATCATTAGCTTTAAAAACAATGGAAGATGGTCAGGTTATGCTATACTCGAACTCAGTTAATGCTGGCTATCCAAAAATTCCCTACCCTTGGCTGGTGTTTAATGAAAAGGTGAAAGTCAATTCAGTCTTTCTTCGGGACTCTACTGGGGTTTCTGACTCTATCCTGCTTTTATTTGGAGGAAATGTTTCGAGAGGAGGACTTGATGGTCACCTCAAAATGTTGGATGGTTATTTGGAGTTTTTCATGAAACCTGCATTGGCCGAGACTTATTTGAGCCTTAAAGGCGAGCTTGATAAGCTTGTTCATCAAAAACTTTTGAATCCGAAGTTAGATATGGAGCCACACAATGAACTACTATCAGCAATAAGGTTGTTGGTGTCAGAGGATCGCTGTGAGGGTAGGTTTGTCTTTGGTCGCCATATGCCTGTACCATCAAAAAAAGCGATGACCGACGGTCAACCTCGACAGAAAAATGGTGATGGAGCTGGGGGTGATAATTCCAAGAATCAGCTTCAGACCCTACTTCTGAGAGCGGGACATGAAACACCAACTTACAAAACTAAGCAATTAAAAAACAACCAGTTTCGTTCCACTGTTATTTTCAACGGGTTGAACTTTGTGGGCCAACCCTGTGGGAGCAAGAAACTTGCAGAAAAAGATGCAGCTGCTGAGGCTCTGCTATGGCTACAGGGTGAGACACATTCATCTTCCCAAGCCATCGATCATGCTTCCATACTTCTGAAAAAGAGCAGAAAGAAGAATGATAAAACATCATTTCGTAGTGCCAAATGGAGTTGATTGGACAGATAAAGAGTAAAAAAGACGATAATCATGAACGACTGTTCAACTTGCTCATGTTTGAAGTTTTGATATTCAAGACTGAGGAGATCAATTTCTTGGCCATGTCTAGGCAACAGTCAATCTAGTTCAACCGCTAATATTGAATCACATGGAGCCATCCATTTACAGGAACTCACTGGGCATTATTCTTCTCAAACGAAAACTCGAGGTCTAACGCGATTTGAACTTTGAAGCAAGTAATCTACCATGCAGTGAGCTACAGTAGTGGCAAGAATTTGCAGCCATAATTTTGCACAATGTTAACCCTCCATAGAAGGAATAGGTTCTAGAAATTGACCAGACCGAGCAATTTAGGTAGATGGTAAATTGCTGCTTGAGAAGCTGTTGTTGTATGAGCTGCCCTCATTGTTTACTTCTCTGCTCAAGAGCTCAGCAGAAAGCCAATTCTTCAGGTTCTATCAACTACTGGCAGATTTGGGCGTCTGGCCATATACTTTGTTTGTTCACCCTATTTTGCTGGTGGTCTAACATATTCTCCAATATTTATGCTACTGTTATACACAGGGATTTGTTCAATAACAGAACTGGGTTGTTTTCCAGTTTTAGTACTAGAGGATTTTTTCCCCCCTCCTTCGGATGTATAGATGTATACTTTTCTTTCCTATAGTTTGTGGTAGAGATTTGAACTTTTGATGACGTTTTTGTCGAAGAGATATACTAGTTAAATTAAGATTGGCAATGACTTTTATATGTGAACAGATGGGATTGACTTGATTCAAATTAATTTATCAGATTCTACATGGTCCTTTTGATTGGAATAA 4748 41.93 MPYSTIFFHSYIRTSMSISFRPTSSPFSISSTRFRPWIPHLFTRRNLSMGFVNFQSRPGLVSGVRCTNQSKWVEVALREKQQDHVKGFRQRNVAFPFWQHQPCSNYGRFAYEDVSSDDSDVEFGSPQGQRSSSTLDNVDEWRWKLTMLLRNNDELEVVSREKKDRRDFEQLSALATRMGLHSRQYAKVVVFSKDPLPNYRPDLDDKRPQREVVLPFGVQREVEGHLRLYQSSHKSVSRGCFSNSYLPKDGVAENYANNNGPFEHQEPLTTQSVVMEKILRRKSLQLRNQQQDWQESPEGQKVIEFRKSLPAFKEREALLKAISENQVVVVSGETGCGKTTQLPQYILESEIEAARGASCSIICTQPRRISAMAVSERVAAERGEKLGESVGYKVRLEGIKGRETRLLFCTTGVLLRRLLVDRNLKGVTHVIVDEIHERGMNEDFLVIVLKDLLPRRPDLRLILMSATLNAELFSSYFGGAPTMHIPGFTYPVRAHFLENILEITGYRLTPYNQIDDYGQEKAWKMQKQAPALKKRKTQIASSVEDAFEAANFSAYSPRTRESLSCWNPDSIGFNLIEHVLSYIVKRERPGAILVFMTGWDDINSLKDQLQSHPLLGDPSRVLLLACHGSMASSEQKLIFDKPEDGVRKIVLATNMAETSITINDVVFVVDCGKAKETSYDALNNTPCLLPSWISKAAARQRRGRAGRVQPGECYHLYPRCVYDAFADYQLPELLRTPLQSLCLQIKSLQLGSISDFLSNALQPPEPLSVQNAIDYLKTIGALDKKENLTVLGQHLSVLPVEPKLGKMLILGAIFNCLDPIMTIVAGLSVRDPFLMPSDKKDLAESAKAQFAARDCSDHLALVRAYQGWRDAEKQQSGYEYCWRNFLSMQTLRAIDSLRKQFFFLLKDTGLVDYDAEKCNISNHDEHLIRAVICAGLFPGICSVVNKEKSLALKTMEDGQVMLYSNSVNAGYPKIPYPWLVFNEKVKVNSVFLRDSTGVSDSILLLFGGNVSRGGLDGHLKMLDGYLEFFMKPALAETYLSLKGELDKLVHQKLLNPKLDMEPHNELLSAIRLLVSEDRCEGRFVFGRHMPVPSKKAMTDGQPRQKNGDGAGGDNSKNQLQTLLLRAGHETPTYKTKQLKNNQFRSTVIFNGLNFVGQPCGSKKLAEKDAAAEALLWLQGETHSSSQAIDHASILLKKSRKKNDKTSFRSAKWS 1213
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 2047601 2056433 + XM_039023279.1 Bhi02g00111 26633

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bhi02g00111 1213 CDD SF2_C_RHA 555 717 - -
Bhi02g00111 1213 Gene3D - 262 487 IPR027417 -
Bhi02g00111 1213 Gene3D - 1101 1182 - -
Bhi02g00111 1213 Pfam DEAD/DEAH box helicase 318 470 IPR011545 GO:0003676|GO:0005524
Bhi02g00111 1213 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 575 749 IPR001650 -
Bhi02g00111 1213 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 309 885 IPR027417 -
Bhi02g00111 1213 SMART ultradead3 307 500 IPR014001 -
Bhi02g00111 1213 Pfam Oligonucleotide/oligosaccharide-binding (OB)-fold 928 1010 IPR011709 -
Bhi02g00111 1213 Pfam Helicase associated domain (HA2) 772 850 IPR007502 GO:0004386
Bhi02g00111 1213 Pfam Helicase conserved C-terminal domain 576 708 IPR001650 -
Bhi02g00111 1213 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 319 486 IPR014001 -
Bhi02g00111 1213 CDD DSRM_SF 1120 1174 - -
Bhi02g00111 1213 SMART ha2_5 771 862 IPR007502 GO:0004386
Bhi02g00111 1213 PANTHER DEXH-BOX ATP-DEPENDENT RNA HELICASE DEXH5, MITOCHONDRIAL 103 1129 - -
Bhi02g00111 1213 Gene3D - 568 727 IPR027417 -
Bhi02g00111 1213 Gene3D - 751 855 - -
Bhi02g00111 1213 CDD DEXHc_RHA-like 325 485 - -
Bhi02g00111 1213 Pfam Double-stranded RNA binding motif 1115 1177 IPR014720 -
Bhi02g00111 1213 PANTHER ATP-DEPENDENT RNA HELICASE 103 1129 - -
Bhi02g00111 1213 MobiDBLite consensus disorder prediction 1091 1116 - -
Bhi02g00111 1213 SMART DRBM_3 1115 1178 IPR014720 -
Bhi02g00111 1213 SUPERFAMILY dsRNA-binding domain-like 1113 1187 - -
Bhi02g00111 1213 SMART helicmild6 603 709 IPR001650 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bhi02g00111 K14442 DHX36, RHAU; ATP-dependent RNA helicase DHX36 [EC:3.6.4.13] - csv:101211075 2199.48
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bhi02g00111 Bhi-Chr2:2047601 Bhi07g01273 Bhi-Chr7:39339156 0 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g260 . . . Bda15g00503 Bpe12g00704 . . . . . Cma10g00315 . Car10g00298 . Sed02g0995 . . Bhi02g00111 Tan09g2059 Cmetu09g0221 . Hepe09g0369 . . . . . . . . . . . . . . . . . Blo13g00181 . . . . . . Bma08g00006 . Cmo10g00338 . . . . . . . . . . . . . . . . . . . . . Lsi06g01305 Csa01g00410 Chy02g02334 Cme02g01706
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001665 2 2 2 3 2 2 3 2 2 2 2 2 3 2 3 3 2 3 3 2 2 1 2 2 2 2 2 6 2 2 70
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bhi02g00111 Bhi_Chr02 FPKM 2.250334 2.798246 0.123203 0.310426 5.415122 5.261714 4.8345 0.0 0.0 0.0