Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bhi02g00257 ATACCAAGATTTTTTGCACGGCAGGAACCCCCGAACTCTCCTATATCTCTCACTGCGACGCAGCGATACTCACGCCGCCTCCTTCAACCACACGCCCGCCGGACGCCAATCATCACACCGTCGCTCCCCGCCGTGCCGTCGTGCCCCGCCGTCCACCGCCGCAGTGCCCAACCTCCAACACGCCACCCACGTCCGCCCCCAACCGTTTGCCGATCCTGAGCTGCCGTCGTTGCGAGCCGTCACCGCCGCCGGAGGTGATTGGGTCTGCGTGCACTTCGTTTCGAGTTTGAACTTAATTCCTTTAAGCATTTGGAGCAAATTTCAACAAAGAGACTTAGTTTTGATTGAAGATTTGGAAAGTGTTAAGTTGCTGTCCAGCAGCTTCGAAAGGATTTCAGCGACTTTTTGATTCGTACCTAAGGGCTAGGATTAGAAGTTACTTTAGAGCAAACCATGTGTTGGGGGTTTTGATCCAAGATTTGCTCTAGGCCAGGAAGAAGATAAATTTCTTATTTTTCGGGCTCAATTTGGAGGGAGATGGGGGGCGAAAAGGACTTGAAAACGTGGGTTTCGGATCAGTTAATGTCACTGCTTGGTTTTTCTCAGCCGACGATTGTGCAGTATATGATTGGACTATCCAAACAAGCAACATCACCTGCCGATGTAGTGAGCAAGTTGGTGATCGATTTTTCCTTGCCATCTTCCGGAGAAACATTGGCTTTTGCTGAAGGAATTTTCTCTAGAGTGCCACGCAAGCAATCATCTGGTTTAAATCTTTATCAGAAGCAAGAGAGAGAAGCTGCAAGTTTGGCAAGAAAGCAGAAGACATATGCACTGCTTGATGCTGATGACGAAGATGTTGAAGATAAAGGACGCAGCAGTGATCCCAGAGAAACAAAAAATCGCGAGAAACATTTTAGAAAGAAAAATGAATATCAAGAAGATGAAGATGATGAGAAGGAAAGTGCTATTGAAAGAGAAAATAGACAGGTTAAACGACGGGCATCTAGTTCTGAAGATGATGGCTCTGAGTCAGAGGAGGAGCGATTGCGAGATCAAAGAGAGAGGGAGCAATTAGAGCAAAATATGAGGGAAAGGGATGCTGCAGGAACCAAAAAGTTAACAGAGCAGAAATTGAGCAGGAAGGAGGAAGAAGAGGCAATTCGAAGATCAGAAGCTTTGGAGAATAATGGAATTGATACTTTGAGGAAAGTTTCAAGACAGGAGTATTTAAAGAAAAGGGAGGAGAAGAAACTGGAAGAAATCAGAGATGATATAGAAGATGAGCAATATCTTTTTGAAGGTGTGAAGCTTACTGAAGCAGAATATCGAGAGCTAAGGTATAAGAAGGAAATATATGAGCTTGTGAAGAAGCGGACAGATGAGGCTGATGACATCAATGAGTACAGGATGCCTGAAGCTTATGATCAGGAAGGGGGTGTTAATCAGGATAAGAGGTTTGCAGTGGCATTGCAGCGATATAGGGATTCAGGTGCTGCCGATAAAATGAACCCGTTTGCCGAACAAGAGGCATGGGAAGAACACCAAATAGGGAAAGCAACAATGAAATTCGGTTCGAAAAACAAAAAACAAGCATCAGATGACTATCAGTTTGTCTTTGAGGATCAGATTGAGTTTATAAAGGCATCAGTTATGGAAGGTGATGAGTTTGTTGATGAACGTCAGACTGAATCACTTGAGAAGTCCAAGGCTAAGTCAGCTCTGGAGAAGCTGCAGGAGGAGAGAAAAACATTGCCAATCTATCCATATCGTGATCAATTACTCCAAGCTGTCAACGATTATCAGGTTCTTGTAATTGTTGGTGAAACTGGTTCTGGAAAGACCACACAGATTCCTCAATATCTTCATGAAGCTGGGTACACAAAGCGAGGAAAAGTTGGATGCACGCAACCACGTCGAGTTGCTGCTATGAGCATTGCTGCTCGGGTATCTCAAGAACTGGGTGTCAAGCTTGGTCATGAGGTTGGTTATTCAATACGTTTTGAGGATTGTACGTCAGATAAGACCGTTTTAAAGTACATGACAGATGGGATGTTGTTACGAGAATTCCTTGGTGAACCTGACCTTGCAAGCTACAGTGTTATAATGGTGGATGAGGCTCATGAAAGAACATTATCAACTGATGTTCTGTTTGGGTTAGTGAAGGATATTGCTAGGTTTCGACCTGATTTGAAGTTACTAATTTCAAGTGCAACACTTGATGCCGAGAAGTTCAGTGATTACTTTGATTCGGCTCCAATATTTAAAATTCCTGGTAGACGTTATCCTGTAGAAATTAACTTCACAAAAGCTCCTGAAGCAGACTATTTAGATGCAGCAATCGTGACTGCACTTCAGATTCATGTCACAAAGCCCCCAGGAGATATATTGGTGTTTCTCACTGGTCAAGAAGAGATTGAAGCAGCTGAGGAAATAATGAAACATAGAACTCGGGGACTAGGCACCAAAATTGCAGAACTCATTATTTGCCCCATATATGCTAACTTACCAACAGAGCTTCAGGCTAAGATATTTGAACCGACACCCATAGGAGCAAGGAAAGTTGTCTTAGCAACTAATATAGCAGAGACATCCTTGACGATTGATGGGATAAAATATGTCATTGATCCTGGTTTTTCTAAAATAAAATCATATAACCCAAGGACTGGGATGGAGGCGTTGCAAGTGAGTCCCATCTCTAAAGCATCAGCAAATCAGAGAGCAGGGCGTTCTGGACGAACGGGCCCTGGAATGTGCTTCCGTTTGTATACTGCTTATAGTTATTATAATGAGATGGAAGACAATACAGTACCAGAAATACAAAGAACAAATCTCGCTAATGTTGTGCTTACACTTAAGAGCCTTGGTATTCATGACTTGGTAAATTTTGATTTTATGGACCAACCTCCATCTGAAGCATTGCTAAAAGCTTTGGAATTGCTTTATGCACTTGGTGCTCTAAATAAACTTGGTGAACTGACTAAGTTGGGTAGGCGGATGGCAGAGTTTCCTCTTGATCCCATGCTTTCTAAGATGATGGTTGCTTCTGAAAAATTCAAGTGTTCAGATGAGATTATTTCTATTGCAGCTATGCTTTCTATTGGAAATTCTATTTTTTATCGTCCGAAGGATAAACAAGTTCATGCTGACAATGCCCGGATGAATTTTCACACTGGGAATGTGGGGGATCACATTGCACTGCTGAAGGTTTACAACTCGTGGAGGGAAACTAATTACTCTACGCAATGGTGCTACGAAAATTACATCCAGGTTAGAAGTATGAAACGTGCAAGAGATATCAGAGACCAACTTGAAGGGCTCTTAGAAAGGGTTGAAATCGAATTAACTTCAAATTTGAATGACTTGGATGCAATAAAGAAGACCATAATATCTGGATTTTTCCCTCACTCTGCAAAGTTACAAAAGAATGGTTCCTATCGGACAATTAAGCATCCACAGACGGTTCATATACATCCTAGCTCAGGGTTGGCTCAGGTTCTTCCGAGATGGGTTGTATACCATGAATTGGTGTGTACCTCAAAAGAATATATGAGACAGGTAACGGAGTTGAAGCCCGAATGGTTGGTTGAAATTGCTCCACATTTCTATCAGCTCAAGGATGTTGAAGATTTGAGTTCAAAAAAGATGCCTCGTGGACAAGGTCGTGCAGGTGCGACTGGAGAAGCAGGTAGTTGAAGAAAGTTAGGACTCGATTGCGAGAAATGATAAGTGGATATACGTTTTCTGGCACGGTATCAACCTATAGCTGCAGATTTCAAATAGAATTTCTATCAACCCCCTCCACCACAAAAGATGCTTTACATACTAACTTGTAGTGTGTATCCTTCTGTACATGTCTAAATTTTAATTGTTAAATGCGTTCAACCCCATAAGGCAGAGATATCACAATTAGAAATTGTACATTTAGAAATAGGAACTTAGGCAAGTTTTGTAAGGTATCTGATGGGAGCTTTAGTAGAGAAAATCATCACTATTAGTTTGACTTAAGTTATGAACTCTTCTTTGTCGATAATATCTATCAAATGTCTACTTGAGAGTGTTGACCTAATTTTGTGACGAACTGAAATTGAATTCAGACAGTTTTTGCCATAATTTTTTACTTTCATCAAATTGTATCTCA 4141 41.85 MGGEKDLKTWVSDQLMSLLGFSQPTIVQYMIGLSKQATSPADVVSKLVIDFSLPSSGETLAFAEGIFSRVPRKQSSGLNLYQKQEREAASLARKQKTYALLDADDEDVEDKGRSSDPRETKNREKHFRKKNEYQEDEDDEKESAIERENRQVKRRASSSEDDGSESEEERLRDQREREQLEQNMRERDAAGTKKLTEQKLSRKEEEEAIRRSEALENNGIDTLRKVSRQEYLKKREEKKLEEIRDDIEDEQYLFEGVKLTEAEYRELRYKKEIYELVKKRTDEADDINEYRMPEAYDQEGGVNQDKRFAVALQRYRDSGAADKMNPFAEQEAWEEHQIGKATMKFGSKNKKQASDDYQFVFEDQIEFIKASVMEGDEFVDERQTESLEKSKAKSALEKLQEERKTLPIYPYRDQLLQAVNDYQVLVIVGETGSGKTTQIPQYLHEAGYTKRGKVGCTQPRRVAAMSIAARVSQELGVKLGHEVGYSIRFEDCTSDKTVLKYMTDGMLLREFLGEPDLASYSVIMVDEAHERTLSTDVLFGLVKDIARFRPDLKLLISSATLDAEKFSDYFDSAPIFKIPGRRYPVEINFTKAPEADYLDAAIVTALQIHVTKPPGDILVFLTGQEEIEAAEEIMKHRTRGLGTKIAELIICPIYANLPTELQAKIFEPTPIGARKVVLATNIAETSLTIDGIKYVIDPGFSKIKSYNPRTGMEALQVSPISKASANQRAGRSGRTGPGMCFRLYTAYSYYNEMEDNTVPEIQRTNLANVVLTLKSLGIHDLVNFDFMDQPPSEALLKALELLYALGALNKLGELTKLGRRMAEFPLDPMLSKMMVASEKFKCSDEIISIAAMLSIGNSIFYRPKDKQVHADNARMNFHTGNVGDHIALLKVYNSWRETNYSTQWCYENYIQVRSMKRARDIRDQLEGLLERVEIELTSNLNDLDAIKKTIISGFFPHSAKLQKNGSYRTIKHPQTVHIHPSSGLAQVLPRWVVYHELVCTSKEYMRQVTELKPEWLVEIAPHFYQLKDVEDLSSKKMPRGQGRAGATGEAGS 1052
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 4787917 4834240 - XM_039023727.1 Bhi02g00257 26779

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bhi02g00257 1052 PANTHER OS05G0389800 PROTEIN 109 1044 - -
Bhi02g00257 1052 SMART ultradead3 404 588 IPR014001 -
Bhi02g00257 1052 MobiDBLite consensus disorder prediction 143 161 - -
Bhi02g00257 1052 Pfam Helicase associated domain (HA2) 798 872 IPR007502 GO:0004386
Bhi02g00257 1052 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 416 579 IPR014001 -
Bhi02g00257 1052 Coils Coil 382 402 - -
Bhi02g00257 1052 MobiDBLite consensus disorder prediction 103 136 - -
Bhi02g00257 1052 Gene3D - 782 939 - -
Bhi02g00257 1052 Coils Coil 163 183 - -
Bhi02g00257 1052 Gene3D - 582 757 IPR027417 -
Bhi02g00257 1052 SMART ha2_5 797 889 IPR007502 GO:0004386
Bhi02g00257 1052 Coils Coil 915 935 - -
Bhi02g00257 1052 Coils Coil 226 253 - -
Bhi02g00257 1052 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 602 777 IPR001650 -
Bhi02g00257 1052 Pfam Oligonucleotide/oligosaccharide-binding (OB)-fold 946 1022 IPR011709 -
Bhi02g00257 1052 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 401 930 IPR027417 -
Bhi02g00257 1052 ProSitePatterns DEAH-box subfamily ATP-dependent helicases signature. 521 530 IPR002464 -
Bhi02g00257 1052 Pfam Helicase conserved C-terminal domain 608 736 IPR001650 -
Bhi02g00257 1052 CDD SF2_C_RHA 583 744 - -
Bhi02g00257 1052 MobiDBLite consensus disorder prediction 103 221 - -
Bhi02g00257 1052 SMART helicmild6 631 736 IPR001650 -
Bhi02g00257 1052 MobiDBLite consensus disorder prediction 168 218 - -
Bhi02g00257 1052 Gene3D - 361 581 IPR027417 -
Bhi02g00257 1052 PANTHER ATP-DEPENDENT RNA HELICASE 109 1044 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bhi02g00257 K12813 DHX16; pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16 [EC:3.6.4.13] - csv:101206270 1949.1
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bhi02g00255 Bhi-Chr2:4787917 Bhi02g00257 Bhi-Chr2:4787917 0 dispersed
Bhi02g00257 Bhi-Chr2:4787917 Bhi06g01735 Bhi-Chr6:48853478 0 dispersed
Bhi02g00256 Bhi-Chr2:4787917 Bhi02g00257 Bhi-Chr2:4787917 0 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g625 . . Bda06g00528 . . . . Bma12g00972 . . . . . Car11g00178 . . Cpe04g01469 Bhi02g00257 . . . . . . . . . . . . . . . . . . . . . . Blo15g00330 . . Bpe07g00762 . . . . . Cmo11g00202 . . . . Cpe09g01050 . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005975 1 6 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 2 1 1 1 1 1 1 1 1 1 3 1 1 39
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bhi02g00257 Bhi_Chr02 FPKM 22.948669 25.200794 21.473627 21.284782 34.91547 37.139832 34.08564 20.843271 19.192095 20.323082