Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bhi02g00275 ATAACATAAGTAGAAGACAAAATTCATTTGTTTTAAAAAAAGTAATCTATGCCATTTTCCCGCTTTCGTCCCTCAAATTCCATTTCCTCCATTCTTCACCAGCGGCTTCGTTCGAACCCTAAATCAATTCACTCTCAGTATTGCTCTATGGATATCACCGAAGAGCAACGAAGGCGTGCGGAAGCAAACCGTTTAGCTGCCATAGCCAAACGCAAAGCACTGATTAAATCTTCTAATGGCCAACAACACCAGGACCCATGGGAACTTTTCAAATGTCGTAAGCTTTCCACTGAACATAATGCTGCCAGTACCATCCAATCATCGAAAAGCTTAACCGGTAACGACACCCATTTGCCTGAAAGGTTCCGAGTAAGGTTGGAAATTTGCTCCCCTGACTCGTTCTCGATCACGCCGGAAGTCGTGGAAGGATGCTTTTACCCGGGAGAGGAAAATTGCTTCAGGATATTGAGCGACTGTTTATCTAGTGTCACACATTCTCACTACACACAAATTATAGGCGGAGGAAAGGCCTTGGTTTATAAGCTGAGGGATTATTGTTCTATTTTGAAATGTTTAAAAAACTCCAAGGACATTGATGTTGAAGAGATACCATGGACAACATTCAACGTGGTTGAGAGACTCTCGCATTCATTTAGTTCAGGGCGATGGATGCCATGCAGGCCTGAGCATCTTTCAGATGAGAAGGTCGACAAATTAATGAAGAAGTTACCGGATCGGTTACTGAATAGACTTTTACCTTTCCAACTTGATGGTGTAAGATTTGGCTTGCAGAGGGGTGGCCGATGTTTGATAGCTGATGAAATGGGTCTTGGGAAAACACTGCAGGCTATTGCAATTGCTAGCTGCCTCATGGATGAAGACGGTTCAATACTTGTTGTTTGCCCTGCTGTTTTACGTTTTTCTTGGGCAGAAGAACTAGAGCGTTGGCTTCCATTTTGTTTGCCTTCTGATATTCATCTTGGTATTGTATTCTTGATAGGAGGATCACTATATAGAACCATTTGTCTTCAACGTTGTGATGCTATATTACTGAGCACATTCTTACTTGAAGATAAAGGCTGTTCTTGATTTAGCAACAAAGATGCAGCATATTATTCTTCTATCTGGAACTCCTTCTTTATCAAGGTTAAAATTGCTATAATAGGTATTACTGCTGGTGGAGTTGGACTTGATTTCTCTTCGGCACAAAATGTTGTGTTTTTGGAATTACCTCAGTCACCTTCGTTGATGCTTCAGG 1258 41.57 MPFSRFRPSNSISSILHQRLRSNPKSIHSQYCSMDITEEQRRRAEANRLAAIAKRKALIKSSNGQQHQDPWELFKCRKLSTEHNAASTIQSSKSLTGNDTHLPERFRVRLEICSPDSFSITPEVVEGCFYPGEENCFRILSDCLSSVTHSHYTQIIGGGKALVYKLRDYCSILKCLKNSKDIDVEEIPWTTFNVVERLSHSFSSGRWMPCRPEHLSDEKVDKLMKKLPDRLLNRLLPFQLDGVRFGLQRGGRCLIADEMGLGKTLQAIAIASCLMDEDGSILVVCPAVLRFSWAEELERWLPFCLPSDIHLGIVFLIGGSLYRTICLQRCDAILLSTFLLEDKGCS 346
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 5208296 5222697 - XM_039024250.1 Bhi02g00275 26797

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bhi02g00275 346 Coils Coil 36 56 - -
Bhi02g00275 346 PANTHER DNA ANNEALING HELICASE AND ENDONUCLEASE ZRANB3 37 311 - -
Bhi02g00275 346 Pfam SNF2-related domain 252 301 IPR000330 GO:0005524|GO:0140658
Bhi02g00275 346 Gene3D - 210 320 IPR038718 -
Bhi02g00275 346 PANTHER DNA ANNEALING HELICASE AND ENDONUCLEASE ZRANB3 FAMILY MEMBER 37 311 - -
Bhi02g00275 346 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 215 317 IPR027417 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bhi02g00275 K25861 ZRANB3; DNA annealing helicase and endonuclease ZRANB3 [EC:5.6.2.- 3.1.-.-] - bhj:120071853 696.812
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bhi02g00275 Bhi-Chr2:5208296 Bhi02g00279 Bhi-Chr2:5208314 0 dispersed
Bhi02g00275 Bhi-Chr2:5208296 Bhi02g00276 Bhi-Chr2:5208296 0 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g621 . . . . . . Bma06g00128 Bma12g00977 . . Cma10g00160 . Car10g00202 . . . . Bhi02g00275 . . . . . . . . . . . . . . . . . . . . . . Blo15g00326 . . Bpe07g00767 . . . . . . . . . . . Cpe18g00774 . . . . . . . . . . . . . . . . Chy02g02461 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0016234 0 6 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 7
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
345 PF00176 SNF2_N 2.40E-08 CL0023 Bhi TR