Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bhi02g00283 CTAAAACTAATGCCCGATCTAATTGTTAAATGTTACGGTTGATGAGGAAACGATCTGCTTCGCTGGGCCGCCGGCTTCAGATGTTTAAGAAATAGTGAACTGCTAACTGCAGAGTCTAATCCAGTCCGTCCATGAAAATGTATTTCCGGCTTCTGCCTCTCTCATGTGGAATAATTCAAAGGTCTCGGCTCCAAGAAATTTGTACAATCTTGAACTCGGTTATTTTAGAATCAGAAATGTCGAAATTTGTGCATACCCAAGCGATGGATCTTCCGCCTCCGAGAACTAACGAGAGAAAGATTCCTGATTACAAGGATGCTCTCCACAAGGAAGGCAATGACGTGCGGAGGGACGGTTATTTCCTCATGAAACTCATAGACGACTCTGTTTCGCATAATGGGTTCGAATCTATTGCTCTTATTTTCTCCAAGTTTCGTAGTTCTATTAATTCTCAGCTCTGTAACTCGATGATCAGGGGTTATTTGGATTTGAATAAGCATTTAAATTCACTCTACATTTTCGCCCACATGCATAAATTCAGTATTCTGCCCGATTCCTCCACTTTTCCTGCTGTTCTTAAAGCAACCGCACAGCTATGTGATACTGAAGTTGGAAAAATGATACATGGTACTGTTATTCAGATGGGTTTTATTCATGATGTCTACACAAGTACCGCTCTAGTTCACATGTATTGTGCCTGTTTGTCTATATCTGATGCTTCTCGGGTGTTCGATGAAATGCCCGAGAGAAATGCAGTTACTTGGAATGCTCTTATTACTGGTTATACTCATAATAGAAAGTTTATGGAAGCTATCAATGCTTTTCGAGGCATGCTGGCAGCTGGAGCTGAACCGAGTGAGCGAACCATGGTGGTAGTTCTATCAGCTTGTTCTCATTTGGGAGCTCTGAATCAGGGAAAGTGGGTCCATGAGTTTATATATCATAATAGGTTGAGACTGAACGTATTTGTGGGCACAGCACTTATTGATATGTATGCTAAATGTGGGGCTGTTGATGAGGCTGAGAAGGTCTTTGAAGAAATTAGAGAGAAGAATGTGTATACATGGAATGTCTTGATTTCTGGATATGCCATGAATGGACAAGGCGATGCTGCTTTGGCGGCTTTTTCTAGGATGTTGATGGAAAATTTCAAGCCAGATGAGGTTACCTTTCTAGGCATCTTGTGCGCATGCTGTCACCAAGGTCTGGTCACGGAAGGGCGCAGGCAATTCATGAGCATGAAACAACATTTTGGACTGCAGCCAAAGATAGAGCATTATGGGTGTATGGTTGACCTACTTGGTCGAGCAGGATTCTTGGATGAAGCTCTAGAGTTAATCCAATCCATGAGCATGGAGCCAGACCCTATCATTTGGAGGGCTCTGCTTTGTGCTTGCAGAGTCCATGGGAATACAAAATTGGGTGAATATACTATCAGAAGACTTATAGAACTAGAACCAAACAATGGTGAGAATTATGTCTTGTTGTCAAATCTTTACTCAAGGGAACAACGGTGGGCTGAAGTAGGGAAGTTGAGAGGAATGATGAGTCTCAGGGGGATTGGAAAAGTCCCTGGTTGCAGTTCAATTGAAATAAACAATGTAGTTTATGAGTTTGCTGCATCAAATGACAGAAAACCAGAATTTGAAGCAATATACAAGCAGTTGGATAATTTGAGTGAGAAATTGAAAGAAAATGGTTACGTTACAGGCACTGACATGGCTTTATATGATATTGAGAAAGAAGAGAAAGAACATTCTGTGATGTACCATAGTGAGAAACTTGCTTTAGCATTTGGTCTCTTAAACTCTCCTTTGGGTTGCACCCTAAGGATAGTGAAAAATCTGAGAATTTGCTTGGACTGCCATGAATTTTTCAAGGTTGTATCGATTGTCTATCAAAGATATATTGTTGTGAGAGACAGAAACCGTTTCCACCATTTTTCTGAAGGTTTTTGTTCGTGCCGAGACTACTGGTGAATAATTAAATGTTATAGAACTATTTCTTCGACATGATGGAAATCACGCAAATCATCTGGATCAACATGATACCATTGGCTTTTTGTGAAAAAATGAAGAATTCTGAAATTGGGCAGCCAAACTACTCAGCCATTGTTCAAGCCGCCATACTTAGTTGGCATGCCTAAGAAACAACTGCATTCCATACCAAACAAAATAGTACATTTACTAATTTGTAATATTTTATAGAACCCCAATTCAATTCTGAAGTTCTATTAAA 2238 40.26 MKMYFRLLPLSCGIIQRSRLQEICTILNSVILESEMSKFVHTQAMDLPPPRTNERKIPDYKDALHKEGNDVRRDGYFLMKLIDDSVSHNGFESIALIFSKFRSSINSQLCNSMIRGYLDLNKHLNSLYIFAHMHKFSILPDSSTFPAVLKATAQLCDTEVGKMIHGTVIQMGFIHDVYTSTALVHMYCACLSISDASRVFDEMPERNAVTWNALITGYTHNRKFMEAINAFRGMLAAGAEPSERTMVVVLSACSHLGALNQGKWVHEFIYHNRLRLNVFVGTALIDMYAKCGAVDEAEKVFEEIREKNVYTWNVLISGYAMNGQGDAALAAFSRMLMENFKPDEVTFLGILCACCHQGLVTEGRRQFMSMKQHFGLQPKIEHYGCMVDLLGRAGFLDEALELIQSMSMEPDPIIWRALLCACRVHGNTKLGEYTIRRLIELEPNNGENYVLLSNLYSREQRWAEVGKLRGMMSLRGIGKVPGCSSIEINNVVYEFAASNDRKPEFEAIYKQLDNLSEKLKENGYVTGTDMALYDIEKEEKEHSVMYHSEKLALAFGLLNSPLGCTLRIVKNLRICLDCHEFFKVVSIVYQRYIVVRDRNRFHHFSEGFCSCRDYW 615
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 5311894 5314131 - XM_039022639.1 Bhi02g00283 26805

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bhi02g00283 615 Pfam PPR repeat family 307 356 IPR002885 -
Bhi02g00283 615 Pfam PPR repeat family 207 254 IPR002885 -
Bhi02g00283 615 Gene3D Tetratricopeptide repeat domain 338 553 IPR011990 GO:0005515
Bhi02g00283 615 Pfam DYW family of nucleic acid deaminases 523 615 IPR032867 GO:0008270
Bhi02g00283 615 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 207 241 IPR002885 -
Bhi02g00283 615 Pfam E motif 425 487 IPR046848 -
Bhi02g00283 615 Pfam PPR repeat 382 407 IPR002885 -
Bhi02g00283 615 Gene3D Tetratricopeptide repeat domain 78 264 IPR011990 GO:0005515
Bhi02g00283 615 PANTHER REPEAT-CONTAINING PROTEIN, PUTATIVE-RELATED 69 589 - -
Bhi02g00283 615 TIGRFAM PPR: pentatricopeptide repeat domain 282 309 IPR002885 -
Bhi02g00283 615 TIGRFAM PPR: pentatricopeptide repeat domain 209 242 IPR002885 -
Bhi02g00283 615 TIGRFAM PPR: pentatricopeptide repeat domain 310 344 IPR002885 -
Bhi02g00283 615 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 277 307 IPR002885 -
Bhi02g00283 615 SUPERFAMILY TPR-like 288 464 IPR011990 GO:0005515
Bhi02g00283 615 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 308 342 IPR002885 -
Bhi02g00283 615 PANTHER - 69 589 - -
Bhi02g00283 615 Gene3D Tetratricopeptide repeat domain 265 337 IPR011990 GO:0005515
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bhi02g00283 - - - csv:101215826 1087.79
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bhi02g00283 Bhi-Chr2:5311894 Bhi02g01030 Bhi-Chr2:23226590 1.08E-16 dispersed
Bhi09g00858 Bhi-Chr9:18911404 Bhi02g00283 Bhi-Chr2:5311894 4.17E-23 dispersed
Bhi02g00283 Bhi-Chr2:5311894 Bhi07g01562 Bhi-Chr7:44720748 8.04E-30 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g607 . . . . Bpe12g00530 . . . . . . Cma11g00119 . . . . . Bhi02g00283 . . . . . . Cla06g01564 . . . . . . . . . . . . . . . . . . . . . . . . Cmo11g00193 . . . Car18g00007 . . . . . . . . . . . . . . . . Lsi06g01438 Csa01g00268 Chy02g02467 Cme02g01854
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012910 0 1 1 0 1 1 0 1 1 1 1 1 1 1 0 1 1 0 0 1 1 1 0 0 0 1 1 0 0 1 19
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bhi02g00283 Bhi_Chr02 FPKM 8.105947 8.645624 0.257056 0.243235 0.0 0.0 0.0 0.0 0.0 0.0