Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bhi02g00325 ATGGACGCCAATTGGATGCAAAAGTGTGAAGTAATGTCCTTTGAAGACTCATTTCCTTTATCATGCCATCTTTCTCCAATCCCTTTTAGATCAACAAGCTACAGTAATTATTCTGGATTGGATTGGAATTGCAATTTTGGGTTGCAAGACAACATTTTTGAGGTTGTTCCTTTGTTAGAAAGTTTCCCAAATGATGACTCCTTTTTGGAACCCAAGGATGTACTGCCAGTTAACACCTATATATCAGAAAATGGGGTTGGGATCAATTGGAGTGAAATGGAAAGTGGGATTTTTGGGATTGTTGAGGAAGAGCCTGTTTTATTGCTAGAAGGAGGGGATGGTAGAGGAAATGAAGAAAACAGAGAAACGATGAAGAAGGGGAAAAGAAAGTATTTGAAGTCAGAAAATAGCAACAACAAAGGGAGTTATTCAACATCATCGTCATCAAAAATGTTGTCTAGAGAAGCAATATCTGAATATTTCTACATGCCCATAACTCAAGCTGCTAAAGAGCTTAATGTGGGACTCACTCTTTTGAAGAAGAGATGTAGAGAATTGGGTATAAGAAGATGGCCACATAGGAAGTTGATGAGCCTACAAACCCTAATCAAGAATGTCAAGGAGATTCAAAAGGGAGAGGAAGATGGAAATGGAGAAAATAAGTTGAAGAATGTATTGGAAATATTAGAGACTGAGAAGAAGTTGATGGAGGAGAGACCAGATTTGCAATTAGAGGACAACACAAAGAGGCTTAGACAAGCTTGTTTCAAAGCCAACTACAAGAAGAAAAAGCTCTCTGGAATAATGATCAATAATAATGAACATGATTCTCAATATTTCTCTTCCTCCACCACCACCACCATTCACGATCATGAGGAAGAATATGATGATGAAGAAATGAAATATCTCTTGTCAGATTGCTCCTTTTCCTCAAGTAACACCCTCTTCATGTAA 954 37.74 MDANWMQKCEVMSFEDSFPLSCHLSPIPFRSTSYSNYSGLDWNCNFGLQDNIFEVVPLLESFPNDDSFLEPKDVLPVNTYISENGVGINWSEMESGIFGIVEEEPVLLLEGGDGRGNEENRETMKKGKRKYLKSENSNNKGSYSTSSSSKMLSREAISEYFYMPITQAAKELNVGLTLLKKRCRELGIRRWPHRKLMSLQTLIKNVKEIQKGEEDGNGENKLKNVLEILETEKKLMEERPDLQLEDNTKRLRQACFKANYKKKKLSGIMINNNEHDSQYFSSSTTTTIHDHEEEYDDEEMKYLLSDCSFSSSNTLFM 317
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 5973502 5975137 - XM_039024382.1 Bhi02g00325 26847

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bhi02g00325 317 PANTHER PROTEIN RKD4 10 280 IPR044607 GO:0003700
Bhi02g00325 317 MobiDBLite consensus disorder prediction 114 135 - -
Bhi02g00325 317 Coils Coil 219 239 - -
Bhi02g00325 317 ProSiteProfiles RWP-RK domain profile. 134 220 IPR003035 -
Bhi02g00325 317 MobiDBLite consensus disorder prediction 111 148 - -
Bhi02g00325 317 Pfam RWP-RK domain 152 199 IPR003035 -
Bhi02g00325 317 PANTHER PROTEIN RKD1-RELATED 10 280 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bhi02g00325 - - - cmo:103494325 377.481
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bhi01g01498 Bhi-Chr1:30740895 Bhi02g00325 Bhi-Chr2:5973502 2.36E-35 dispersed
Bhi02g00325 Bhi-Chr2:5973502 Bhi03g00764 Bhi-Chr3:14216911 1.04E-21 dispersed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Bhi02g00325 . 143 268 AtRKD Transcription Factor Family AT1G18790 70.6 1.2e-40 164.5
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002327 1 2 1 3 2 2 3 2 2 4 1 2 2 4 2 2 2 2 2 2 1 2 2 2 2 1 2 3 2 2 62
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
356 PF02042 RWP-RK 3.40E-21 No_clan Bhi TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bhi02g00325 Bhi_Chr02 FPKM 12.85281 12.541247 14.129018 14.473828 9.279721 9.384016 9.352023 27.913395 29.137119 31.643373