Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bhi02g00502 TGGAGGAAAGTTTGAACCATTTCCGGGGGGAACTCGATTAATATCCGTTTCCTAGACAGCCGGAAATTAATAAGAAAAAAATTTTACTCTATTTTTGCAAATATTTTTTATCAAACCCTATTTTTGGTAATAATTTTAGAAAATAACCCCAATTTTCCACTTAATCCTCAATTTGCATGTGGTTCTCCAACTTTGTCTGTGTTTACACTTACAGAGGACCAGAGTTGTATGGTGAAACCCAATTGATAGTTAATGATATAAAGCTTTGGATGTCGCTTTATCTCCATGTCCTCACATCGGAGCTTTCCAAGAGTTTTCAAACCCTTTTACGAACAAAGGAACTGCATGCTTTTATTACCAAAGCCCATCTTGCTTGCGACCCCTTTTACGCAACTAGAATTGTTAGGCTCTACTCCCTCAATAGTAGACTCGATTATGCCCGCCATGTGTTCGACAAATCTCCCAACCGAACTGTCTACCTCTGGAACTCAATCATTCGAGCTTACGCAAAAGCATATAAATTCCGGGATGCATTGTCTCTGTTCCTCACAATGTTTGGACATGAGACTTTGCCTGATAACTTCACCTATTCATGCATCATAAGGGCATGTTCTGACAACTTCCATGGAGAATGGCTGAAATTTGTTCATGGACGAGTTTTATTATCCGGGTTTGGATTAGATCCTATCTGTTGCAGCGCTCTAGTGACTGCATACTCAAATCTGGACCTTATTGAAGATGCAAGCAAGGTGTTTGATGGAGTACCTCATCCAGATTTGGTTATGTGGAATTCAATCATTTCTGGTTTTGGGTACTGCGGGTATTGGAATCAGGGGCTCCTGTTATTTTCTAGGATGAGGAATCTTGGAGAACATCCAGATGGATACACGGTAGTTGGTGTGGCGTTGTGTATAGCAGAACCTAGTCTACTGAGCACTGGCAAATGTATTCATGGATTTTGCCTCAAATGTAGTTTTGACTCTAATGAGCACGTAGCAAGTGCACTTGTGAGTATGTATTCGAGGTGTAATTGCATGGATTCAGCATATTTAGTTTTTAGTAGTTTGTTACAGCCTGATTTAGTTACATGGTCTGCTTTAATAACTGGCTATTCTCAAGCTGGTGATTTTAGGAAAGCATTGTTCTTCTTTCAGAAACTGAATATGCAGGGTAAGAAGCCGGATTCCATTTTGATTTCCAGCATTTTGGCTGCTACTGCTCAATCAACCAGCACAAGTCATGGAATTGAGATACATGGCTATGTTCTACGACATGGGATTGAATCAGACGAGATGGTATCCTCTTCTCTCATAGACATGTATTCCAAATGTGGTTATTTGAGTTTGGGAATTCGTGTTTTTCACATTATGCCTCAAAAAGGCATCCTGACATACAACTCTGTCATATGGGGACTTGGTTTGCATGGGCTTGCATCAAATGCATTGGAAATGTTTCAGGAGTTGTTGGACATTTGTTTAGTGCCTAATGAGTCCACTTTCTCAGCTCTCCTCTGTGCATGCTGCCATGTTGGTCTTAACTCTGTTGGCAAGGAGATTTTCAGAAGGATGAAAGATGAGTTTTGCATCAAATATAGAACAGAACATTATGTTTACATTGTAAAACTTCTTGGAATGACTGGCGAGTTAGAAGAAGCTTACAATCTTATTCTGTCCTTACCAGAGCCTGTAGATTCTGGTATTTGGGGAGCTCTACTGTCCTGCTGTGATGCTTGTGGGAACCTTGAACTGGCTGAAGTTGTTGCTCAGCGGCTCATACAAAACGAACCTGACAAAACTGCTTATAAAGTAATGCTCTCTAATATTTATGCTGGAGAAGGGAGATGGGATGATGTGAAGTTGTTAAGGGATACAATGACAGAAAAGGAGCGAGCAAAATTGCCCGGGCTTAGCTGGATTTGAGAGTTTGATGTTTATGATCAACCCTGCGAGGGCTCGGCTGGGCAGTATATTCGGTTGGTCATCATGGATCATATTACAATAATATACAGAAGCTAGAGTCATCATGTGTCAATGTTTTTAAAAAAAATGACAAATTTGAAATTATGCCTGCCAGATTCCTTGAAATTATGGCTGCTTTCTCCTAACCTCGGAGATGCCACCAGTGTTCTTTCGGCATTAACTTCAGATTATAGAGTGCCTCAAGAATCACTTGCATCATGGCTAGAGCAGGATCCCACCTCAACGTAACAGCTAAAATATGGAGTTCGTCTTTGTTGATTTCTGGGACATTATGTTGCACCTGTGTGAAATGAAGGCCTAAA 2281 40.55 MWFSNFVCVYTYRGPELYGETQLIVNDIKLWMSLYLHVLTSELSKSFQTLLRTKELHAFITKAHLACDPFYATRIVRLYSLNSRLDYARHVFDKSPNRTVYLWNSIIRAYAKAYKFRDALSLFLTMFGHETLPDNFTYSCIIRACSDNFHGEWLKFVHGRVLLSGFGLDPICCSALVTAYSNLDLIEDASKVFDGVPHPDLVMWNSIISGFGYCGYWNQGLLLFSRMRNLGEHPDGYTVVGVALCIAEPSLLSTGKCIHGFCLKCSFDSNEHVASALVSMYSRCNCMDSAYLVFSSLLQPDLVTWSALITGYSQAGDFRKALFFFQKLNMQGKKPDSILISSILAATAQSTSTSHGIEIHGYVLRHGIESDEMVSSSLIDMYSKCGYLSLGIRVFHIMPQKGILTYNSVIWGLGLHGLASNALEMFQELLDICLVPNESTFSALLCACCHVGLNSVGKEIFRRMKDEFCIKYRTEHYVYIVKLLGMTGELEEAYNLILSLPEPVDSGIWGALLSCCDACGNLELAEVVAQRLIQNEPDKTAYKVMLSNIYAGEGRWDDVKLLRDTMTEKERAKLPGLSWI 580
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 9694600 9697668 - XM_039022627.1 Bhi02g00502 27024

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bhi02g00502 580 Pfam PPR repeat family 99 145 IPR002885 -
Bhi02g00502 580 Pfam PPR repeat 202 231 IPR002885 -
Bhi02g00502 580 Pfam PPR repeat 405 430 IPR002885 -
Bhi02g00502 580 Pfam PPR repeat 376 403 IPR002885 -
Bhi02g00502 580 Pfam PPR repeat 303 328 IPR002885 -
Bhi02g00502 580 Pfam PPR repeat 439 466 IPR002885 -
Bhi02g00502 580 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 99 133 IPR002885 -
Bhi02g00502 580 Gene3D Tetratricopeptide repeat domain 356 455 IPR011990 GO:0005515
Bhi02g00502 580 Gene3D Tetratricopeptide repeat domain 263 355 IPR011990 GO:0005515
Bhi02g00502 580 Gene3D Tetratricopeptide repeat domain 38 154 IPR011990 GO:0005515
Bhi02g00502 580 Pfam E motif 521 580 IPR046848 -
Bhi02g00502 580 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 200 234 IPR002885 -
Bhi02g00502 580 Gene3D Tetratricopeptide repeat domain 456 577 IPR011990 GO:0005515
Bhi02g00502 580 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 301 335 IPR002885 -
Bhi02g00502 580 PANTHER OS01G0545900 PROTEIN 36 579 - -
Bhi02g00502 580 TIGRFAM PPR: pentatricopeptide repeat domain 101 127 IPR002885 -
Bhi02g00502 580 TIGRFAM PPR: pentatricopeptide repeat domain 202 235 IPR002885 -
Bhi02g00502 580 TIGRFAM PPR: pentatricopeptide repeat domain 303 336 IPR002885 -
Bhi02g00502 580 PANTHER REPEAT-CONTAINING PROTEIN, PUTATIVE-RELATED 36 579 - -
Bhi02g00502 580 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 371 405 IPR002885 -
Bhi02g00502 580 Gene3D Tetratricopeptide repeat domain 155 251 IPR011990 GO:0005515
Bhi02g00502 580 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 437 471 IPR002885 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bhi02g00502 - - - csv:101205656 978.393
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bhi02g00502 Bhi-Chr2:9694600 Bhi03g02655 Bhi-Chr3:66135328 6.15E-41 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g803 . . . . . . . . . . Cma10g00102 . Car10g00091 . . . . Bhi02g00502 . . . Hepe09g0226 . . . . . . . . . . . Cone13ag0161 . . . . . Blo13g00138 . . . . . . . . Cmo10g00106 . . . . . . . . . . . . . . . . . . . . . . Csa01g00120 Chy02g02607 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0014459 0 1 1 0 0 1 1 0 0 1 1 1 0 0 1 1 1 1 0 1 1 1 1 1 0 1 1 1 1 1 21
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bhi02g00502 Bhi_Chr02 FPKM 0.482456 0.283183 2.576708 2.567198 1.443831 1.684672 0.38271 0.018209 0.0 0.113809