Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bhi02g00508 TCTCTTAACATGAACCCTTCTTCTTCCTCTTCGCCTGTAGATCTTGAATACGTCGAACCGGAATAGTAAGGGTTGCTGAAGGCTACGACCGGTCAGTTATCTTCCGTTTCCGAATTCCACCGTTGAAGCATATTAGTCTGTTTCTTCTACTTTCGAAATCCTACAACGTATTTCAGAATCATGAATCCTTATGACCATAGATACAACGATCCCAATTCCTACCGAGAACGCCGAAGTGACCTTGTGGGTCTACAGCCTGCTGGGCCACCGCCAATAGTAGGGCGTGAATCCTTGTACAAAGGTTATCAACCTCCTCCAGTTCCATACTATGGCCGTGAAAGAGGTGGAGGAGGTGCTTTACCTAATGCAGGAGGCTTCAATGGCTTCCCACGGTTTCAGCCTCCCGCAGGACCGTTTAATATCGGCCGCGGTGGCAGTGGTTCCGGTAACAGCGGTGGTGGTCGGAGAATGTTTGATTCGGGGAGGGGCGGTAGAAGAACTGGTGGGAATATTGGTTTTGGAGGTGGACGTGGTGGAGGCACGGGATTTGACGGCCGTGCTGGCGGAAGAGGGGCTGGACGTGGTGGTGGTTCTTCAAGAGGGGATTTAGATAACATAGTCCTTCCGAATCAGAATTTTGGCAATTTAGTCCCTTTTGAAAAGAATTTCTACACTGAGTGTCCTTCTGTTCGTGCAATGACGGAGTCTGAAGTTAAGATTTACAGAGAGAGGCGTGATATTAGAGTGGAAGGATACGATGTTCCAAGACCGATTCGGAGTTTTCAGGAGGCGAATTTTCCTGCTTACTGCCTTGATGTAATTGCGAAATTGGGATTTGTTGAGCCAACTCCAATTCAGGCTCAAGGATGGCCGATGGCCATGAAAGGAAGAGATTTGATTGGCATCGCTGAGACTGGTTCTGGGAAGACTCTAGCCTATCTACTGCCAGCTTTAATACACATTAGTGCCCAGCCTCGTTTAGCGCATGGTGAAGGTCCTATTGTGTTGGTGTTAGCACCCACTAGAGAATTAGCTGTTCAAATTCAACAAGAGGCTACTAAATTCGGGTTGCGTGCTAATATTAGAAGTACTTGCATTTATGGTGGGGCGCCGAAGGGCCCTCAAATTCGTGATCTTAAAAATGGTGTTGAGATTGTTATTGCTACACCTGGTCGGCTCATAGATATGCTCGAAGCTGGCCACACTAACCTGCGGCGAGTGACTTACCTTGTTTTAGATGAAGCGGATAGAATGCTGGACATGGGATTTGAGCCTCAAATAAGGACTATCGTTAGCCAAATCCGACCTGATAGGCAGACATTATATTGGAGTGCCACATGGCCAAGGGAGGTTGAGAAATTGGCTAGACAATTTTTACGTAATGCATATAAGGTGATTATTGGTTCACCAGATCTTAAAGCTAACCAGTCTATAAACCAAGTCGTTGAAGTTTTGCCAGAGTCTGAAAAATATAGAAGGTTAATAAAATTGCTTGTAGAAGTGATGGATGGTAGTCGTATTCTGATTTTTGTGGAAACAAAAAAGGGATGTGATAAAGTAACGAGACAATTGAGAATGGATGGATGGCCAGCTCTATCCATTCATGGCGATAAAAAGCAGGCTGAAAGGGACTTGGTTTTGTCAGAATTTAAGAGTGGAAGAAACCCCATAATGACAGCCACAGATGTGGCTGCAAGAGGGCTTGATGTGAAAGATATAAAATGTGTGATCAACTATGATTTCCCATCAAGCCTCGAGGACTACGTCCACAGGATTGGCCGAACGGGTCGTGCTGGTGCAAAGGGAACTGCATTCACATTCTTTACTCATGAGAATGCGAAACATGCTAGAGATCTTATAAAGATACTGCGAGAAGCAGGGCAGATTGTCACCCCTGCATTGTCTGCTTTAGCCTCGTCTAGTGGCTTTGGAGGTTCTAGCGCTAAATTCCGCCCTCAAGGACACAGAGGTGGCTTTGGTAATCGAACAATGGTTTCGGGATCAAATGCGATCCCTCTTGGTTTGGCGACAAGGCCTCGCTAGTTCTGCTCAACTCGGAATGAAGCATATATGCTAGGTAAGTGTAATGTTTTTGAGAAATGTGGACCATTTTCATTCATGTAATATAGTTGACTTATTTCTAGAATTGTTTGGCATGAAAATGGACATGCGGGTATATCTGTACATAAAACCAGAATTCTGGTAGACATTGTTGACAGTGTTAGGGTTAGGTTTGGTGGATGTAGGGTTGGTGAAGGTGATGAAAAAAGGATGCTTACGATATTTGAATCCTAGATATTTAGTATCTATCCTCGTGAATCAATATATGTAATCCAAACGGCCGGTAAAATCATGATTTGGTTGAGTGTGGAGAAAGAATGGAAGCTATGGTTTTGAAGGAA 2402 44.71 MNPYDHRYNDPNSYRERRSDLVGLQPAGPPPIVGRESLYKGYQPPPVPYYGRERGGGGALPNAGGFNGFPRFQPPAGPFNIGRGGSGSGNSGGGRRMFDSGRGGRRTGGNIGFGGGRGGGTGFDGRAGGRGAGRGGGSSRGDLDNIVLPNQNFGNLVPFEKNFYTECPSVRAMTESEVKIYRERRDIRVEGYDVPRPIRSFQEANFPAYCLDVIAKLGFVEPTPIQAQGWPMAMKGRDLIGIAETGSGKTLAYLLPALIHISAQPRLAHGEGPIVLVLAPTRELAVQIQQEATKFGLRANIRSTCIYGGAPKGPQIRDLKNGVEIVIATPGRLIDMLEAGHTNLRRVTYLVLDEADRMLDMGFEPQIRTIVSQIRPDRQTLYWSATWPREVEKLARQFLRNAYKVIIGSPDLKANQSINQVVEVLPESEKYRRLIKLLVEVMDGSRILIFVETKKGCDKVTRQLRMDGWPALSIHGDKKQAERDLVLSEFKSGRNPIMTATDVAARGLDVKDIKCVINYDFPSSLEDYVHRIGRTGRAGAKGTAFTFFTHENAKHARDLIKILREAGQIVTPALSALASSSGFGGSSAKFRPQGHRGGFGNRTMVSGSNAIPLGLATRPR 620
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 9814548 9819089 - XM_039023213.1 Bhi02g00508 27030

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bhi02g00508 620 MobiDBLite consensus disorder prediction 1 143 - -
Bhi02g00508 620 CDD DEADc_DDX5_DDX17 211 405 - -
Bhi02g00508 620 PANTHER LD32873P 152 590 - -
Bhi02g00508 620 Gene3D - 411 579 IPR027417 -
Bhi02g00508 620 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 152 590 - -
Bhi02g00508 620 Pfam Helicase conserved C-terminal domain 429 539 IPR001650 -
Bhi02g00508 620 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 199 227 IPR014014 GO:0003724
Bhi02g00508 620 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 351 359 IPR000629 -
Bhi02g00508 620 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 433 578 IPR001650 -
Bhi02g00508 620 SMART helicmild6 458 539 IPR001650 -
Bhi02g00508 620 CDD SF2_C_DEAD 418 548 - -
Bhi02g00508 620 SMART ultradead3 218 421 IPR014001 -
Bhi02g00508 620 Pfam DEAD/DEAH box helicase 223 394 IPR011545 GO:0003676|GO:0005524
Bhi02g00508 620 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 230 405 IPR014001 -
Bhi02g00508 620 MobiDBLite consensus disorder prediction 1 17 - -
Bhi02g00508 620 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 272 559 IPR027417 -
Bhi02g00508 620 Gene3D - 163 409 IPR027417 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bhi02g00508 K12823 DDX5, DBP2; ATP-dependent RNA helicase DDX5/DBP2 [EC:3.6.4.13] - csv:101203955 1046.19
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bhi01g01832 Bhi-Chr1:39294829 Bhi02g00508 Bhi-Chr2:9814548 6.44E-101 dispersed
Bhi01g01833 Bhi-Chr1:39295789 Bhi02g00508 Bhi-Chr2:9814548 6.44E-101 dispersed
Bhi01g02699 Bhi-Chr1:66864945 Bhi02g00508 Bhi-Chr2:9814548 0 dispersed
Bhi02g00508 Bhi-Chr2:9814548 Bhi02g00510 Bhi-Chr2:9815197 0 dispersed
Bhi11g01266 Bhi-Chr11:37368461 Bhi02g00508 Bhi-Chr2:9814548 4.60E-135 dispersed
Bhi02g00508 Bhi-Chr2:9814548 Bhi02g00509 Bhi-Chr2:9815196 0 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g810 . . . . . . . . . . . . . . . . . Bhi02g00508 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cmo10g00102 . . . . . . . . . . . . . . . . . . . . . Lsi06g01587 Csa01g00116 . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011968 0 3 0 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 29
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bhi02g00508 Bhi_Chr02 FPKM 1.075774 1.014388 0.232142 0.264546 4.49121 4.873561 5.329591 0.0 0.0 0.0