Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bhi02g00510 GTCTCTTAACATGAACCCTTCTTCTTCCTCTTCGCCTGTAGATCTTGAATACGTCGAACCGGAATAGTAAGGGTTGCTGAAGGCTACGACCGGTCAGTTATCTTCCGTTTCCGAATTCCACCGTTGAAGCATATTAGTCTGTTTCTTCTACTTTCGAAATCCTACAACGTATTTCAGAATCATGAATCCTTATGACCATAGATACAACGATCCCAATTCCTACCGAGAACGCCGAAGTGACCTTGTGGGTCTACAGCCTGCTGGGCCACCGCCAATAGTAGGGCGTGAATCCTTGTACAAAGGTTATCAACCTCCTCCAGTTCCATACTATGGCCGTGAAAGAGGTGGAGGAGGTGCTTTACCTAATGCAGGAGGCTTCAATGGCTTCCCACGGTTTCAGCCTCCCGCAGGACCGTTTAATATCGGCCGCGGTGGCAGTGGTTCCGGTAACAGCGGTGGTGGTCGGAGAATGTTTGATTCGGGGAGGGGCGGTAGAAGAACTGGTGGGAATATTGGTTTTGGAGGTGGACGTGGTGGAGGCACGGGATTTGACGGCCGTGCTGGCGGAAGAGGGGCTGGACGTGGTGGTGGTTCTTCAAGAGGGGATTTAGATAACATAGTCCTTCCGAATCAGAATTTTGGCAATTTAGTCCCTTTTGAAAAGAATTTCTACACTGAGTGTCCTTCTGTTCGTGCAATGACGGAGTCTGAAGTTAAGATTTACAGAGAGAGGCGTGATATTAGAGTGGAAGGATACGATGTTCCAAGACCGATTCGGAGTTTTCAGGAGGCGAATTTTCCTGCTTACTGCCTTGATGTAATTGCGAAATTGGGATTTGTTGAGCCAACTCCAATTCAGGCTCAAGGATGGCCGATGGCCATGAAAGGAAGAGATTTGATTGGCATCGCTGAGACTGGTTCTGGGAAGACTCTAGCCTATCTACTGCCAGCTTTAATACACATTAGTGCCCAGCCTCGTTTAGCGCATGGTGAAGGTCCTATTGTGTTGGTGTTAGCACCCACTAGAGAATTAGCTGTTCAAATTCAACAAGAGGCTACTAAATTCGGGTTGCGTGCTAATATTAGAAGTACTTGCATTTATGGTGGGGCGCCGAAGGGCCCTCAAATTCGTGATCTTAAAAATGGTGTTGAGATTGTTATTGCTACACCTGGTCGGCTCATAGATATGCTCGAAGCTGGCCACACTAACCTGCGGCGAGTGACTTACCTTGTTTTAGATGAAGCGGATAGAATGCTGGACATGGGATTTGAGCCTCAAATAAGGACTATCGTTAGCCAAATCCGACCTGATAGGCAGACATTATATTGGAGTGCCACATGGCCAAGGGAGGTTGAGAAATTGGCTAGACAATTTTTACGTAATGCATATAAGGTGATTATTGGTTCACCAGATCTTAAAGCTAACCAGTCTATAAACCAAGTCGTTGAAGTTTTGCCAGAGTCTGAAAAATATAGAAGGTTAATAAAATTGCTTGTAGAAGTGATGGATGGTAGTCGTATTCTGATTTTTGTGGAAACAAAAAAGGGATGTGATAAAGTAACGAGACAATTGAGAATGGATGGATGGCCAGCTCTATCCATTCATGGCGATAAAAAGCAGGCTGAAAGGGACTTGGTTTTGTCAGAATTTAAGAGTGGAAGAAACCCCATAATGACAGCCACAGATGTGGCTGCAAGAGGGCTTGGTAGGATTACTACATGTCAGATGTGAAAGATATAAAATGTGTGATCAACTATGATTTCCCATCAAGCCTCGAGGACTACGTCCACAGGATTGGCCGAACGGGTCGTGCTGGTGCAAAGGGAACTGCATTCACATTCTTTACTCATGAGAATGCGAAACATG 1867 45.74 MNPYDHRYNDPNSYRERRSDLVGLQPAGPPPIVGRESLYKGYQPPPVPYYGRERGGGGALPNAGGFNGFPRFQPPAGPFNIGRGGSGSGNSGGGRRMFDSGRGGRRTGGNIGFGGGRGGGTGFDGRAGGRGAGRGGGSSRGDLDNIVLPNQNFGNLVPFEKNFYTECPSVRAMTESEVKIYRERRDIRVEGYDVPRPIRSFQEANFPAYCLDVIAKLGFVEPTPIQAQGWPMAMKGRDLIGIAETGSGKTLAYLLPALIHISAQPRLAHGEGPIVLVLAPTRELAVQIQQEATKFGLRANIRSTCIYGGAPKGPQIRDLKNGVEIVIATPGRLIDMLEAGHTNLRRVTYLVLDEADRMLDMGFEPQIRTIVSQIRPDRQTLYWSATWPREVEKLARQFLRNAYKVIIGSPDLKANQSINQVVEVLPESEKYRRLIKLLVEVMDGSRILIFVETKKGCDKVTRQLRMDGWPALSIHGDKKQAERDLVLSEFKSGRNPIMTATDVAARGLGRITTCQM 516
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 9815197 9819090 - XM_039023215.1 Bhi02g00510 27032

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bhi02g00510 516 Gene3D - 409 509 IPR027417 -
Bhi02g00510 516 MobiDBLite consensus disorder prediction 1 143 - -
Bhi02g00510 516 CDD DEADc_DDX5_DDX17 211 405 - -
Bhi02g00510 516 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 199 227 IPR014014 GO:0003724
Bhi02g00510 516 Pfam DEAD/DEAH box helicase 223 394 IPR011545 GO:0003676|GO:0005524
Bhi02g00510 516 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 351 359 IPR000629 -
Bhi02g00510 516 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 184 407 IPR027417 -
Bhi02g00510 516 SMART ultradead3 218 421 IPR014001 -
Bhi02g00510 516 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 433 516 IPR001650 -
Bhi02g00510 516 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 230 405 IPR014001 -
Bhi02g00510 516 MobiDBLite consensus disorder prediction 1 17 - -
Bhi02g00510 516 CDD SF2_C_DEAD 418 508 - -
Bhi02g00510 516 Pfam Helicase conserved C-terminal domain 429 508 IPR001650 -
Bhi02g00510 516 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 152 508 - -
Bhi02g00510 516 Gene3D - 163 408 IPR027417 -
Bhi02g00510 516 PANTHER LD32873P 152 508 - -
Bhi02g00510 516 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 417 508 IPR027417 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bhi02g00510 K12823 DDX5, DBP2; ATP-dependent RNA helicase DDX5/DBP2 [EC:3.6.4.13] - csv:101203955 864.374
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bhi02g00508 Bhi-Chr2:9814548 Bhi02g00510 Bhi-Chr2:9815197 0 dispersed
Bhi02g00510 Bhi-Chr2:9815197 Bhi11g01618 Bhi-Chr11:46566085 7.69E-115 dispersed
Bhi02g00509 Bhi-Chr2:9815196 Bhi02g00510 Bhi-Chr2:9815197 0 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g811 . . . . . . . . . . Cma10g00099 . Car10g00086 . . . . Bhi02g00510 . . . . . . Cla06g01693 Cam06g1881 Cec06g1928 Cco06g1933 Clacu06g1837 Cmu06g1779 Cre06g2594 Cone2ag0927 . . . . . . . . . . . Bpe07g00856 . . . . Cmo10g00101 . . . . . . Cpe18g00865 . . . . . . . . . . . . . . Lsi06g01588 . Chy02g02611 Cme02g02008
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011968 0 3 0 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 29
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bhi02g00510 Bhi_Chr02 FPKM 9.609005 10.169623 6.903699 7.558481 17.882484 19.885206 19.008602 18.113747 19.366095 17.537285