Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bhi02g00523 TGAAGGCTGTTACCTTATCTCAACTCTTTTCGGAGTTCTGCGACTCTCTCACCCTTTTTTCTTCCTTCCATCTTCACCTCTTCAAAAATTTCTTCACATTCCCCAAAATCACTTCCCTATTTCCTCAAATCTTCTCATCAATCCATCAAATCCCCTCCCAGCATTTGGCCAACCCTTACTACTACAATCGCCGCCGTCGCCGGCCGATGGACACCAACAATCAAACCCAATCCTCCCCTTACCCTCCCCCTCAGGCCCCTGTCCCGGCCCCTCCCTTCCACCACCTCCTTCAGCAGCAGCAGCAACAGCTTCAGATGTTCTGGTCCTTTCAGCGTCAAGAAATCGAACAGGTTAACGATTTTAAAAACCATCAGCTTCCTCTCGCCCGCATTAAGAAGATCATGAAAGCCGACGAGGATGTTCGTATGATCTCTGCCGAGGCCCCCATTTTGTTTGCCAAGGCTTGCGAGCTCTTCATTCTTGAACTCACTATTAGGTCATGGCTCCACGCGGAAGAGAATAAGAGGCGGACATTGCAGAAGAATGATATTGCTGCTGCCATCACGAGGACCGATATCTTTGATTTCTTAGTTGATATTGTGCCTAGAGATGAGATCAAGGACGAGGCTGGGTTGGGAGGCATGGTCGGAGCCACTGCTAGCGGAGTGCCGTACTATTACCCGCCTATGGGCCAACCGGCAGGGGCTCCAGGGGGGATGATGATTGGGAGACCGGCAATGGATCCTACCGGAGTTTACGCTCAGCCGCCGTCCCAGGCATGGCAATCGGTGTGGCAGACCGCGGCTGAGGACGGTTCTTACGCGAGTGGGGGCAGTAGCGGGCAGGGTAATCTTGATGGTCAGAGCTAAGCAATTCTTGTGTAGATGATCTGCTGTCTGGTGCAATGAAAAAAACTGATGGGTTTTGCTGATCCTGTCCAGGGCGTAAAATGAAGTGTATTTTTCTTTTATGTTTCCTTTTCGCACGGGGTTAACTTTGGAAACTTGTAAAAACTTTAACTAGATGTCGTCGAATTGACATTACTTTGTTAGCTTGTTTCTACGTTTCTGATATGAATTGGCTTTTATCATTTTGGTTCAAGATCAATTTTACCTTGTT 1119 48.61 MDTNNQTQSSPYPPPQAPVPAPPFHHLLQQQQQQLQMFWSFQRQEIEQVNDFKNHQLPLARIKKIMKADEDVRMISAEAPILFAKACELFILELTIRSWLHAEENKRRTLQKNDIAAAITRTDIFDFLVDIVPRDEIKDEAGLGGMVGATASGVPYYYPPMGQPAGAPGGMMIGRPAMDPTGVYAQPPSQAWQSVWQTAAEDGSYASGGSSGQGNLDGQS 220
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 10022921 10028253 - XM_039023067.1 Bhi02g00523 27045

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bhi02g00523 220 SUPERFAMILY Histone-fold 30 128 IPR009072 GO:0046982
Bhi02g00523 220 PANTHER HISTONE-LIKE TRANSCRIPTION FACTOR CCAAT-RELATED 2 220 - -
Bhi02g00523 220 MobiDBLite consensus disorder prediction 1 23 - -
Bhi02g00523 220 Gene3D Histone, subunit A 24 134 IPR009072 GO:0046982
Bhi02g00523 220 PANTHER NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT C-4 2 220 - -
Bhi02g00523 220 Pfam Core histone H2A/H2B/H3/H4 48 119 IPR007125 GO:0003677
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bhi02g00523 - - - csv:101213576 358.607
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bhi02g00523 Bhi-Chr2:10022921 Bhi02g02028 Bhi-Chr2:55177350 2.62E-69 dispersed
Bhi04g01469 Bhi-Chr4:36657833 Bhi02g00523 Bhi-Chr2:10022921 1.97E-10 dispersed
Bhi07g01165 Bhi-Chr7:36325218 Bhi02g00523 Bhi-Chr2:10022921 1.05E-11 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g85 . . . . . . . . . . . . . . . . . Bhi02g00523 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Bhi02g00523 . 35 219 CCAAT-HAP5 Transcription Factor Family AT3G48590 89.5 1.4e-88 323.6
Bhi02g02032 . 82 250 CCAAT-HAP5 Transcription Factor Family AT3G48590 65.1 1.2e-52 204.1
Bhi02g02028 . 82 250 CCAAT-HAP5 Transcription Factor Family AT3G48590 65.1 1.2e-52 204.1
Bhi02g02029 . 82 250 CCAAT-HAP5 Transcription Factor Family AT3G48590 65.1 1.2e-52 204.1
Bhi02g02031 . 82 250 CCAAT-HAP5 Transcription Factor Family AT3G48590 65.1 1.2e-52 204.1
Bhi02g02030 . 82 250 CCAAT-HAP5 Transcription Factor Family AT3G48590 65.1 1.2e-52 204.1
Bhi05g00797 . 82 225 CCAAT-HAP5 Transcription Factor Family AT3G48590 68.8 1.6e-52 203.8
Bhi05g00796 . 82 225 CCAAT-HAP5 Transcription Factor Family AT3G48590 68.8 1.6e-52 203.8
Bhi05g00794 . 82 225 CCAAT-HAP5 Transcription Factor Family AT3G48590 68.8 1.6e-52 203.8
Bhi05g00795 . 82 225 CCAAT-HAP5 Transcription Factor Family AT3G48590 68.8 1.6e-52 203.8
Bhi02g02032 . 1 260 CCAAT-HAP5 Transcription Factor Family AT1G08970 55.6 7.6e-55 211.5
Bhi02g02028 . 1 260 CCAAT-HAP5 Transcription Factor Family AT1G08970 55.6 7.6e-55 211.5
Bhi02g02029 . 1 260 CCAAT-HAP5 Transcription Factor Family AT1G08970 55.6 7.6e-55 211.5
Bhi02g02031 . 1 260 CCAAT-HAP5 Transcription Factor Family AT1G08970 55.6 7.6e-55 211.5
Bhi02g02030 . 1 260 CCAAT-HAP5 Transcription Factor Family AT1G08970 55.6 7.6e-55 211.5
Bhi05g00797 . 28 180 CCAAT-HAP5 Transcription Factor Family AT1G08970 70.6 1.8e-48 190.3
Bhi05g00796 . 28 180 CCAAT-HAP5 Transcription Factor Family AT1G08970 70.6 1.8e-48 190.3
Bhi05g00794 . 28 180 CCAAT-HAP5 Transcription Factor Family AT1G08970 70.6 1.8e-48 190.3
Bhi05g00795 . 28 180 CCAAT-HAP5 Transcription Factor Family AT1G08970 70.6 1.8e-48 190.3
Bhi02g00523 . 34 133 CCAAT-HAP5 Transcription Factor Family AT1G08970 83.0 1.1e-42 171.0
Bhi02g02032 . 16 250 CCAAT-HAP5 Transcription Factor Family AT1G54830 59.6 7.9e-62 234.6
Bhi02g02028 . 16 250 CCAAT-HAP5 Transcription Factor Family AT1G54830 59.6 7.9e-62 234.6
Bhi02g02029 . 16 250 CCAAT-HAP5 Transcription Factor Family AT1G54830 59.6 7.9e-62 234.6
Bhi02g02031 . 16 250 CCAAT-HAP5 Transcription Factor Family AT1G54830 59.6 7.9e-62 234.6
Bhi02g02030 . 16 250 CCAAT-HAP5 Transcription Factor Family AT1G54830 59.6 7.9e-62 234.6
Bhi05g00797 . 28 224 CCAAT-HAP5 Transcription Factor Family AT1G54830 59.1 3.3e-52 202.6
Bhi05g00796 . 28 224 CCAAT-HAP5 Transcription Factor Family AT1G54830 59.1 3.3e-52 202.6
Bhi05g00794 . 28 224 CCAAT-HAP5 Transcription Factor Family AT1G54830 59.1 3.3e-52 202.6
Bhi05g00795 . 28 224 CCAAT-HAP5 Transcription Factor Family AT1G54830 59.1 3.3e-52 202.6
Bhi02g00523 . 34 193 CCAAT-HAP5 Transcription Factor Family AT1G54830 67.3 2.8e-51 199.5
Bhi02g00523 . 34 192 CCAAT-HAP5 Transcription Factor Family AT5G50480 54.7 5.7e-38 155.2
Bhi02g00523 . 35 219 CCAAT-HAP5 Transcription Factor Family AT5G63470 81.4 1.1e-80 297.4
Bhi05g00797 . 82 225 CCAAT-HAP5 Transcription Factor Family AT5G63470 66.4 6.7e-49 191.8
Bhi05g00796 . 82 225 CCAAT-HAP5 Transcription Factor Family AT5G63470 66.4 6.7e-49 191.8
Bhi05g00794 . 82 225 CCAAT-HAP5 Transcription Factor Family AT5G63470 66.4 6.7e-49 191.8
Bhi05g00795 . 82 225 CCAAT-HAP5 Transcription Factor Family AT5G63470 66.4 6.7e-49 191.8
Bhi02g02032 . 82 250 CCAAT-HAP5 Transcription Factor Family AT5G63470 62.6 8.8e-49 191.4
Bhi02g02028 . 82 250 CCAAT-HAP5 Transcription Factor Family AT5G63470 62.6 8.8e-49 191.4
Bhi02g02029 . 82 250 CCAAT-HAP5 Transcription Factor Family AT5G63470 62.6 8.8e-49 191.4
Bhi02g02031 . 82 250 CCAAT-HAP5 Transcription Factor Family AT5G63470 62.6 8.8e-49 191.4
Bhi02g02030 . 82 250 CCAAT-HAP5 Transcription Factor Family AT5G63470 62.6 8.8e-49 191.4
Bhi05g00797 . 46 213 CCAAT-HAP5 Transcription Factor Family AT1G56170 81.7 2.0e-64 243.0
Bhi05g00796 . 46 213 CCAAT-HAP5 Transcription Factor Family AT1G56170 81.7 2.0e-64 243.0
Bhi05g00794 . 46 213 CCAAT-HAP5 Transcription Factor Family AT1G56170 81.7 2.0e-64 243.0
Bhi05g00795 . 46 213 CCAAT-HAP5 Transcription Factor Family AT1G56170 81.7 2.0e-64 243.0
Bhi02g02032 . 54 218 CCAAT-HAP5 Transcription Factor Family AT1G56170 67.2 4.9e-50 195.3
Bhi02g02028 . 54 218 CCAAT-HAP5 Transcription Factor Family AT1G56170 67.2 4.9e-50 195.3
Bhi02g02029 . 54 218 CCAAT-HAP5 Transcription Factor Family AT1G56170 67.2 4.9e-50 195.3
Bhi02g02031 . 54 218 CCAAT-HAP5 Transcription Factor Family AT1G56170 67.2 4.9e-50 195.3
Bhi02g02030 . 54 218 CCAAT-HAP5 Transcription Factor Family AT1G56170 67.2 4.9e-50 195.3
Bhi02g00523 . 35 158 CCAAT-HAP5 Transcription Factor Family AT1G56170 74.8 6.3e-50 194.9
Bhi07g01165 . 59 340 CCAAT-HAP5 Transcription Factor Family AT3G12480 51.8 4.0e-61 232.6
Bhi04g01469 . 3 135 CCAAT-HAP5 Transcription Factor Family AT5G43250 65.7 1.3e-38 156.8
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005355 1 1 2 2 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 2 1 1 1 1 1 2 1 1 40
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
389 PF00808 CBFD_NFYB_HMF 2.20E-17 CL0012 Bhi TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bhi02g00523 Bhi_Chr02 FPKM 6.370177 7.041029 15.806472 13.209956 6.046789 5.116317 5.596311 19.311621 21.359142 20.203659