Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bhi02g00536 TTCCTAAAACCCCTCAAACCCTAAAACTTTTTCCCCAACATCTCTCGCCTTTCGAAGCCACTGAAGGAGAGAAACTGGGAGCGGTTCTGCGATAGTGTCTCTCTGGTTTTGGTCCCATGACTTCGACGTATCTTCTCTATGAATCTGCTTCTGGTTATGCTCTGTTTCATGCCCATGGCCTCGACGAAATCGGGCAGAACACGGAAGCCGTTCGGAGCTCTGTCTCCGACCTTAACCGCTTCGGCAAGGTCGTGAAGCTTGCTGCTTTCCACCCTTTCGAGTCGGCTCTCGATGCTCTCAAGCAGTGCAACTCTGTCTCCGAAGGGCTCATGACTGATGAGTTGCGGAGTTTTTTGGAAATTAATCTTCCAAAAGTTAAGGAAGGTAAAAAGGCCAAGTTTGTTTTGGGACTAGCTGAACCCAAAATTGGGTCAAACATCTTTGAAGAGACTAAAATCCCATGCCAAAGCAACGAGTTTGTTCTGGAGCTGCTTCGGGGAGTGCGTCTGCACTTTGATAAATTTATCAAGGACCTCAAGCCAGGGGATTTGGAGAAAGCACAACTTGGTTTGGGACACAGTTACAGTCGAGCTAAAGTAAAGTTCAATGTTAATCGTGTTGATAATATGGTGATTCAGGCGATCTTCCTTCTCGACACTCTTGACAAGGACATAAATTCCTTCTCAATGAGAGTCAGAGAGTGGTATTCATGGCATTTCCCTGAGTTGGTGAAGATTGTCAGTGACAATTATCTTTATGCTAAAGTTGCAAAGTTTATTGAGGACAAGTCAAAGTTGGCAGAGGATGAAATCCCTGCCTTGACTGACATAATTGGCGATGAAGATAAAGCAAAGGAGATTGTTGAAGCAGCCAAAGCCTCCATGGGCCAGGATTTGTCTGCTATTGACTTGATTAATGTCCAGCAATTTGCACAGAGGGTGATGGATCTTTCTGAATACAGGAAGAAGCTTTATGATTATCTAGTTGCTAAAATGAATGATATTGCTCCCAATTTGGCCTCTTTGATTGGTGAAGTTGTTGGGGCCCGTTTAATTTCTCACGCTGGCAGTCTCACAAATTTGGCCAAATGCCCTTCTTCCACCCTTCAGATTCTTGGCGCTGAGAAAGCACTCTTCAGGGCTTTGAAAACAAGAGGAAACACTCCTAAATATGGTCTCATCTTTCATTCTTCTTTCATTGGGCGAGCATCTGCACGGAACAAAGGCCGAATGGCTCGTTATCTTGCAAACAAATGCTCTATTGCATCACGTATTGATTGCTTTGCAGAGAGCAGTACCACAACCTTTGGAGAGAAACTTCGTGAGCAAGTTGAAGAGCGCCTTGACTTTTATGACAAGGGAATAGCTCCTCGTAAAAACATAGATGTTATGAAAGCTGCAATTGAAAGTGCTGATAACAAAGCAACTGATATGGATGTAGAAGAAGTGCCAAGTGAAGCTTCAGGGAAGAAGAGCAAGAAAAAGAAATCAAAAGCTAATATGAACGGTGAACTTGAAGACAGGCCAAGTGCTACCGAGAACGGTGATGTTGCTAAGGATGCGAAATCAGAAAAGAAGAAAAGGAAGGAGAAACGAAAGTTGGATAGAGAAAGAGAGGAGCAGCAGGTGGCTTCAGAAATCGTAAATGGAGTAAACGGTGAGAAAAAAGAAGGCAAGAAGAAGAAAAAAAAGAAGAGCAAGGATGAAAATAAGGAGGATGCTCAGGTCGCTGCAGAAGATGGTAAGAAGAAAAAGAAGAAAAAGTCGAAAAGCGAAGATGCCGAATAGTAACATGGAGACAGATGGTTATTAATAGGTAGACATCGTTTTGTTGCTATAATATTCTAGCTGTAGAAAAGCCCTTTTGTGGCTGTTTTTGGTCTCCCATCTCTATATTTTTGTCCCTCAGCAAAACTTAACGCCAACATGCGTATGGTTGTCGCCGTGTCTTATAATCTGAACGACTTCCAGTGGAAGAAATGTATTCTACTCTAATTTTGTTGGAAGTGTGTTTTTTTCTTTTAATTTATGTTCCATCGTAGCCGAAGTTCCTCTCA 2056 42.8 MTSTYLLYESASGYALFHAHGLDEIGQNTEAVRSSVSDLNRFGKVVKLAAFHPFESALDALKQCNSVSEGLMTDELRSFLEINLPKVKEGKKAKFVLGLAEPKIGSNIFEETKIPCQSNEFVLELLRGVRLHFDKFIKDLKPGDLEKAQLGLGHSYSRAKVKFNVNRVDNMVIQAIFLLDTLDKDINSFSMRVREWYSWHFPELVKIVSDNYLYAKVAKFIEDKSKLAEDEIPALTDIIGDEDKAKEIVEAAKASMGQDLSAIDLINVQQFAQRVMDLSEYRKKLYDYLVAKMNDIAPNLASLIGEVVGARLISHAGSLTNLAKCPSSTLQILGAEKALFRALKTRGNTPKYGLIFHSSFIGRASARNKGRMARYLANKCSIASRIDCFAESSTTTFGEKLREQVEERLDFYDKGIAPRKNIDVMKAAIESADNKATDMDVEEVPSEASGKKSKKKKSKANMNGELEDRPSATENGDVAKDAKSEKKKRKEKRKLDREREEQQVASEIVNGVNGEKKEGKKKKKKKSKDENKEDAQVAAEDGKKKKKKKSKSEDAE 556
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 10185995 10189725 + XM_039024159.1 Bhi02g00536 27058

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bhi02g00536 556 Gene3D Nop domain 300 412 IPR042239 -
Bhi02g00536 556 MobiDBLite consensus disorder prediction 434 556 - -
Bhi02g00536 556 PANTHER NUCLEOLAR PROTEIN 5 NUCLEOLAR PROTEIN NOP5 NOP58 3 554 IPR045056 GO:0030515|GO:0031428|GO:0032040
Bhi02g00536 556 ProSiteProfiles Nop domain profile. 296 414 IPR002687 -
Bhi02g00536 556 MobiDBLite consensus disorder prediction 527 556 - -
Bhi02g00536 556 Pfam snoRNA binding domain, fibrillarin 178 410 IPR002687 -
Bhi02g00536 556 SMART NOSIC_2 171 223 IPR012976 -
Bhi02g00536 556 Gene3D - 142 299 - -
Bhi02g00536 556 PANTHER BNACNNG34340D PROTEIN 3 554 - -
Bhi02g00536 556 SUPERFAMILY Nop domain 164 413 IPR036070 -
Bhi02g00536 556 MobiDBLite consensus disorder prediction 434 451 - -
Bhi02g00536 556 Coils Coil 481 505 - -
Bhi02g00536 556 Pfam NOP5NT (NUC127) domain 5 70 IPR012974 -
Bhi02g00536 556 MobiDBLite consensus disorder prediction 459 485 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bhi02g00536 K14564 NOP56; nucleolar protein 56 - csv:101216223 931.013
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bhi02g00536 Bhi-Chr2:10185995 Bhi06g01740 Bhi-Chr6:48893591 4.46E-112 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g142 . . Bda06g00736 . . . . Bma12g01076 . . Cma10g00072 . Car10g00060 . . . . Bhi02g00536 . . . Hepe09g0060 . . Cla06g01731 Cam06g1922 Cec06g1972 Cco06g1976 Clacu06g1878 Cmu06g1820 Cre06g2635 . . Cone13ag0211 Cone19ag0200 . . . . . Blo15g00215 . . Bpe07g00883 . . . . Cmo10g00069 . . . . . . . . . . . . . . . . . . . . . Lsi06g01631 Csa01g00068 Chy02g02652 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003680 2 1 2 1 2 1 1 1 1 2 1 1 1 1 1 2 1 2 2 1 1 1 1 3 3 1 1 3 3 1 45