Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bhi02g00543 CAACAATCTGAGTCTCAGGTCTCAACTGTCTATTTTCCTTTGTGGTTTCTCATTCCTCTCTCTCTCTCTCTGTAAAGGACGTTATCGAAGGGTTTTCGTCTTTACGGGGGTTGGTTCGCATTGCGAGCGACGGGCTCTGCTCGAGATCCAGGTTTCTAATGGGATTTCTACCAGCGCCTTCATAGGGTTTTTGCCTCTATTGTGTTTCATTTTCTGAATTTTGGTGTGATTTCGTTTACTCCTGCTCGATCTAGGGTTTCGTTTCGAGGGGTTTATCTTGTTCTTGGATTAGATTCTGCCTTTGCTATATTTCGATCTTTCTTTCTTTTTCTTTTTCTTTTTGCTTCTTCCAAAGGTGGAAGCGGAAGTATTTCATTTGAGGAGTGAGGTTGTTGTTTGCGACAGCAGGAAGATTGATGGGCTGAAGAAGCAATTTCATTTTTTAGGAAATATATGGTCATGTGGTCGAAGCTTTTAAGTTTGCGAGGGTTTCAATTGCTTGAACTGGGCCAGTGGAATTTTTTGAGGATTGGGTTGTTTAGTCATTGTCTATTGTTTTAGTGACTTCTGGGAAGTTATCTGAACCTGTTCTTTGTCGACCTGTTGATGTTGGAATTCACCCAGGGATGAAATAGTGAATTCGTTCCATGAGCTTGAGATTCCCACAAATGGCAACCCTTGTGTACACTGGTAGACGACAGAAGGACTCCGTTGTCCGGATAAATTGCTGGGAATTAATCCTATGGCTCCGACTGTTCCTATAGAGTTTGCTGGACAGAAGGAATCTCGAAAGTATTCACTTTCACAGGCAATGGGGAAATCGAGGAAATATTCCAAAGGGCTTTCTTTTGGTTTTGTTCCAGATTACCGACATGCTGTGGAAACAGTTGGCGAATCAGAAGGGTTTGGGAGCTCTGGACGATTGGATACTGGAATCTCTGCTCTTGATGATTCACGGGCCATTAAGAAGAAACGTATTAGTATGAATGCAGATGGTTACGATTGCTTTGGTGCTCCTCTTCAAGTTTTTTCTCTATCAACATTGTCTCGATCTGAAAGGAAGGATTTAGAGTTAAGGTTAAAGTTAGAACTTGAGCAGGTCCGACTGCTGCAAAAAAGAGCTTCTAATGTTAGTTCAATTTTTGCTGTCTCATCATCTAGTAATATCCAGAGTTCTAGTGATCAGCACAGGGGAGCTCCTCCAGAGACTTTTAATAGGTTGACTGAGGTATCAGTTCCTCCTGCTAAAAAGCCACTGCCCTCTGGGCGCAATGGGCCTTCTGCTAAAAGAAGCTCCTCTGGGCGGTTTGAATCTGCTAAACCAGCTGCTGTATCTGCTTCCTCGACAGCATCATTGAAACAATGTGAACAGCTGCTGCAACGCTTGATGTCACATACATTTGGTTGGGTTTTTAACACTCCAGTGGATGTGGTCAAGTTGAATATTCCAGATTACTTTACTGTTATAAAGCATCCAATGGATTTGGGCACGGTGAAGTCTAAGATTACTGCAGGAGAATACACACATCCGTTGGATTTTGCTGCGGATGTTAGACTTACTTTTTCGAATGCGATGACTTACAACCCTCCTGGGAATGACGTCCATACCATGGCTAAGACACTAAGTAAATTTTTTGAAGTTCGATGGAAGACTATAGAGAAGAAGCTCCCTGTGACAACTGAAGAACAACGACAAGTACCTTCAGCCACAATTGTTCCTAAAGAAACTGAAAGTACTCTGCCAGTGCCACCTTCAAAAAAGACAAAAATGCCTACGAATGACCCTGATATTCAGCCAAACAGTGTGGTAAAAATCATGACCGACCAGGAGAAGCATAAACTAAGTGTAGAGTTGGAGAGTTTGCTGGGAGAGTTGCCTGAAAGCATCATTGATTTCCTAAAGGAGCACAGTTCTAATTCTCAAGCTGGCGAGGATGAGATTGAAATTGACATTGATGCTCTTAGTGATGATACATTGTTTGCATTGAGGAAGCTATTAGATGATTATATGATGGAAAAGCAGAAACACACAAAGGCTGAACCATGTGTAGTGGAGCTTCGTAACGAATCAGGATTTAGCAATTCATCAATGCCACCCAGTAAAGGAAATGATCCCATTGATGAGGATGTTGACATTGTTGGTGGAAATGACCCCCCTGTTTCAATTTATCCTCCAATAGAGATAGAAAAAGATGCAGTCCGTAGAGATAGTAAATGCAGTAATTCCAGTAGCTCGAGTAGTGAATCAGGTTCTTCATCTAGTGATTCTGGCTCAGAAAGCTTATCGGGAAGTGAATCTAATGCTGTTAAAGCTCTAGATTTTAATGTGGCTACAAAGGAAATTTTGTGTTCTGAAACAAATATGGATCAGAAGCAATGTGAACTTGGTGATTTAGAAATTGGAAATTATGAAGAAAATGAGATTGGTCTAGTAGTTGAGCAAACCGGCCAGGCCAATACAAACACTAATGAGTCAGATAGCTACCAAGAGGAGGGGGAGAGTGCTCCATCTAAGAGGCAAGTCTCCCCCGACAGGCTTTACCGTGCAGCTTTATTAAGGAACCGTTTTGCTGACACTATACTGAAAGCTCGAGAAAAGGCACTTGAAAAGGGTGACAAACGGGATCCTGAAAAAGTGCGAATGGAAAGGGAAGAACTCGAAAGACAGCAAAGAGAAGAAAAAGCCCGGTTGCAAGCAGAGGCAAAAGCTGCAGAGGATGCTCGCAGGAAGGCTGAAGCTGAAGCTGCAGCCGAAGCTAGGAAGAAAAGGGAGTTGGATAGAGAAGCTGCACGTCAGGCCTTACTTAAGATGGAGAAGACTGTTGATATTAATGAAAACAGTCAATTCATGGAGGACCTAGAAATGCTTAGGGCTTCCAACGATGAACATCTACCAAACTTCATAGAGGAGTCGAGCCCAGAACATTCTCAGAATGGATTCGGCAGTTTCAAACTTCAAGGCAGTAACCCCCTAGAACAACTTGGTTTGTACATGAAGGTGGATGAGGAAGACGAAGAAGAAGAGAGTGAACCACCCCAAAGTGTTAGTAAGCCAGCAAATGATGTTGAAGAAGGGGAAATTGATTAG 3088 42.58 MAPTVPIEFAGQKESRKYSLSQAMGKSRKYSKGLSFGFVPDYRHAVETVGESEGFGSSGRLDTGISALDDSRAIKKKRISMNADGYDCFGAPLQVFSLSTLSRSERKDLELRLKLELEQVRLLQKRASNVSSIFAVSSSSNIQSSSDQHRGAPPETFNRLTEVSVPPAKKPLPSGRNGPSAKRSSSGRFESAKPAAVSASSTASLKQCEQLLQRLMSHTFGWVFNTPVDVVKLNIPDYFTVIKHPMDLGTVKSKITAGEYTHPLDFAADVRLTFSNAMTYNPPGNDVHTMAKTLSKFFEVRWKTIEKKLPVTTEEQRQVPSATIVPKETESTLPVPPSKKTKMPTNDPDIQPNSVVKIMTDQEKHKLSVELESLLGELPESIIDFLKEHSSNSQAGEDEIEIDIDALSDDTLFALRKLLDDYMMEKQKHTKAEPCVVELRNESGFSNSSMPPSKGNDPIDEDVDIVGGNDPPVSIYPPIEIEKDAVRRDSKCSNSSSSSSESGSSSSDSGSESLSGSESNAVKALDFNVATKEILCSETNMDQKQCELGDLEIGNYEENEIGLVVEQTGQANTNTNESDSYQEEGESAPSKRQVSPDRLYRAALLRNRFADTILKAREKALEKGDKRDPEKVRMEREELERQQREEKARLQAEAKAAEDARRKAEAEAAAEARKKRELDREAARQALLKMEKTVDINENSQFMEDLEMLRASNDEHLPNFIEESSPEHSQNGFGSFKLQGSNPLEQLGLYMKVDEEDEEEESEPPQSVSKPANDVEEGEID 781
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 10311935 10318520 + XM_039024347.1 Bhi02g00543 27065

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bhi02g00543 781 CDD Bromo_plant1 205 302 IPR037377 -
Bhi02g00543 781 MobiDBLite consensus disorder prediction 714 781 - -
Bhi02g00543 781 Coils Coil 633 681 - -
Bhi02g00543 781 Coils Coil 106 126 - -
Bhi02g00543 781 PRINTS Bromodomain signature 219 232 IPR001487 GO:0005515
Bhi02g00543 781 PRINTS Bromodomain signature 235 251 IPR001487 GO:0005515
Bhi02g00543 781 PRINTS Bromodomain signature 251 269 IPR001487 GO:0005515
Bhi02g00543 781 PRINTS Bromodomain signature 269 288 IPR001487 GO:0005515
Bhi02g00543 781 MobiDBLite consensus disorder prediction 491 520 - -
Bhi02g00543 781 MobiDBLite consensus disorder prediction 314 352 - -
Bhi02g00543 781 Pfam Bromodomain 208 292 IPR001487 GO:0005515
Bhi02g00543 781 Gene3D - 354 429 IPR038336 -
Bhi02g00543 781 ProSiteProfiles Bromodomain profile. 216 288 IPR001487 GO:0005515
Bhi02g00543 781 ProSiteProfiles NET domain profile. 349 430 IPR027353 -
Bhi02g00543 781 MobiDBLite consensus disorder prediction 620 680 - -
Bhi02g00543 781 PANTHER TRANSCRIPTION FACTOR GTE10 25 765 - -
Bhi02g00543 781 SMART bromo_6 197 307 IPR001487 GO:0005515
Bhi02g00543 781 MobiDBLite consensus disorder prediction 442 520 - -
Bhi02g00543 781 Pfam Bromodomain extra-terminal - transcription regulation 359 420 IPR027353 -
Bhi02g00543 781 MobiDBLite consensus disorder prediction 569 595 - -
Bhi02g00543 781 PANTHER TRANSCRIPTION FACTOR GTE8 25 765 - -
Bhi02g00543 781 Gene3D - 186 321 IPR036427 GO:0005515
Bhi02g00543 781 MobiDBLite consensus disorder prediction 142 193 - -
Bhi02g00543 781 MobiDBLite consensus disorder prediction 723 742 - -
Bhi02g00543 781 MobiDBLite consensus disorder prediction 313 352 - -
Bhi02g00543 781 SUPERFAMILY Bromodomain 184 310 IPR036427 GO:0005515
Bhi02g00543 781 MobiDBLite consensus disorder prediction 569 589 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bhi02g00543 - - - csv:101217420 1233.01
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bhi02g00543 Bhi-Chr2:10311935 Bhi02g00546 Bhi-Chr2:10312882 0 dispersed
Bhi02g00542 Bhi-Chr2:10311935 Bhi02g00543 Bhi-Chr2:10311935 0 tandem
Bhi02g00543 Bhi-Chr2:10311935 Bhi02g00544 Bhi-Chr2:10311940 0 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g154 . . Bda06g00738 . . . . Bma12g01074 . . . Cma11g00049 Car10g00063 Car11g00042 . . Cpe04g01603 Bhi02g00543 . . . Hepe09g0065 . . Cla06g01728 Cam06g1918 Cec06g1968 Cco06g1972 Clacu06g1874 Cmu06g1816 Cre06g2631 . . Cone13ag0209 Cone19ag0196 . . . . . . . . Bpe07g00881 . . . . Cmo10g00071 Cmo11g00050 . . . . . . . . . . . . . . . . . . . . Lsi06g01625 Csa01g00073 Chy02g02647 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003560 2 5 2 2 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 5 1 1 47
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bhi02g00543 Bhi_Chr02 FPKM 55.081341 58.732239 51.181076 52.499947 23.686068 18.420195 23.219877 16.969418 17.755854 16.990328