Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bhi02g00576 ATGTCCTACATATATTTTATGAGAAGAATCCCAATGGCACACGAAACGACACCGCATAGGGTAGCCACACTCACAACCCAAAACACCACTTGCTTAGCCGCCCATAACGGCCTCCTCTACTCCGGCTCCACCAACCAGATCACCGTCTTCGATTTAACCAACGGCTTTACTCAAATCGACACTCTCCGCATAAACGACGCCGCTTCGGGGTCCGTCAAGTCCATCGCTTTTGGGCCTTGGAAAATCTTCACGGCCCATCAAGACTGCAAGATCCGCGTCTGGAAGATCACGCGCTCGGGACCGCCACGTCATCGTCTTCTGACAACTCTCCCCACCGTTAAAGACAGGCTGTACCGGTTTATTTCGCCGGGGAATTACGTGCGTGTACGGCGCCACCATAAGCGGCTGTGGATCGAGCATTGGGATGCGGTTTCTGGAGTGGTGGTTAATGGAGGGTTTGTGTACTCTGTTTCATGGGATCGGAGTTTTAAGGTTTGGAGTGCTTCAGACCATAAGTGTTTGCTGTCGGTCAAAGCTCACGATGATGCGGTCAACGCGGTTGCTGTTAGTCATAACGGCGTCGTTTATACTGGCTCTGCGGATGGGGTTATTGGAGTATGGCAGATCAGGGAGGGGAAGAAGAAGAAGTACACGTTGGTTAGGTCTTTGGACAACCATAAATCTACGGTAAACGCAATCGTGTTGAACGAGGGAGGTTGGACAATGTTTTCGGGGAGCAGTGATCGTTCGATAATGGTGTGGAAGAGAGAAGAGGTCGGAAAGCATATTGCATTTGTGGAGACTTTATGGGGCCATCAAGGGGCTGTTTTGTGCTTGTATTCTCTCCGAGATTTCTTAGTCAGTGGGTCGGAGGATCGGACGCTCAGGATTTGGAGAGGTGACCTTGCTAACGGTTACCAATGTATGACCCTAATAGATGGTCACAGGTCGCCGGTTAAGTCGTTGGTTGCCGTTGGCACCGATCATCGGAGTTTGATGATCTGTAGTGCCAGTTTGGATGGACAAATACAAGTTTGGAGTTTCGGGATTTGA 1053 50.33 MSYIYFMRRIPMAHETTPHRVATLTTQNTTCLAAHNGLLYSGSTNQITVFDLTNGFTQIDTLRINDAASGSVKSIAFGPWKIFTAHQDCKIRVWKITRSGPPRHRLLTTLPTVKDRLYRFISPGNYVRVRRHHKRLWIEHWDAVSGVVVNGGFVYSVSWDRSFKVWSASDHKCLLSVKAHDDAVNAVAVSHNGVVYTGSADGVIGVWQIREGKKKKYTLVRSLDNHKSTVNAIVLNEGGWTMFSGSSDRSIMVWKREEVGKHIAFVETLWGHQGAVLCLYSLRDFLVSGSEDRTLRIWRGDLANGYQCMTLIDGHRSPVKSLVAVGTDHRSLMICSASLDGQIQVWSFGI 350
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 10934513 10937228 + XM_039024397.1 Bhi02g00576 27098

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bhi02g00576 350 PRINTS G protein beta WD-40 repeat signature 242 256 IPR020472 -
Bhi02g00576 350 PRINTS G protein beta WD-40 repeat signature 286 300 IPR020472 -
Bhi02g00576 350 PRINTS G protein beta WD-40 repeat signature 334 348 IPR020472 -
Bhi02g00576 350 PANTHER F-BOX AND WD40 DOMAIN PROTEIN 23 347 IPR045182 -
Bhi02g00576 350 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 223 255 - -
Bhi02g00576 350 ProSiteProfiles Trp-Asp (WD) repeats profile. 177 217 IPR001680 GO:0005515
Bhi02g00576 350 PANTHER TRANSDUCIN/WD40 REPEAT PROTEIN 23 347 - -
Bhi02g00576 350 Gene3D - 13 119 IPR015943 GO:0005515
Bhi02g00576 350 Gene3D - 125 349 IPR015943 GO:0005515
Bhi02g00576 350 ProSiteProfiles Trp-Asp (WD) repeats profile. 312 350 IPR001680 GO:0005515
Bhi02g00576 350 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 312 350 - -
Bhi02g00576 350 ProSiteProfiles Trp-Asp (WD) repeats profile. 269 298 IPR001680 GO:0005515
Bhi02g00576 350 Pfam WD domain, G-beta repeat 172 207 IPR001680 GO:0005515
Bhi02g00576 350 Pfam WD domain, G-beta repeat 307 347 IPR001680 GO:0005515
Bhi02g00576 350 Pfam WD domain, G-beta repeat 219 255 IPR001680 GO:0005515
Bhi02g00576 350 Pfam WD domain, G-beta repeat 268 298 IPR001680 GO:0005515
Bhi02g00576 350 SUPERFAMILY WD40 repeat-like 26 348 IPR036322 GO:0005515
Bhi02g00576 350 ProSiteProfiles Trp-Asp (WD) repeats profile. 223 255 IPR001680 GO:0005515
Bhi02g00576 350 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 177 213 - -
Bhi02g00576 350 SMART WD40_4 55 95 IPR001680 GO:0005515
Bhi02g00576 350 SMART WD40_4 123 167 IPR001680 GO:0005515
Bhi02g00576 350 SMART WD40_4 17 51 IPR001680 GO:0005515
Bhi02g00576 350 SMART WD40_4 170 208 IPR001680 GO:0005515
Bhi02g00576 350 SMART WD40_4 305 347 IPR001680 GO:0005515
Bhi02g00576 350 SMART WD40_4 216 255 IPR001680 GO:0005515
Bhi02g00576 350 SMART WD40_4 262 299 IPR001680 GO:0005515
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bhi02g00576 - - - csv:101204201 593.193
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bhi02g00576 Bhi-Chr2:10934513 Bhi08g01453 Bhi-Chr8:42602115 7.96E-77 dispersed
Bhi08g02136 Bhi-Chr8:61436215 Bhi02g00576 Bhi-Chr2:10934513 4.47E-08 transposed
Bhi02g00576 Bhi-Chr2:10934513 Bhi07g01834 Bhi-Chr7:49745524 1.20E-107 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g871 . . . . . Bpe13g00263 . . . . . . . . . . . Bhi02g00576 Tan09g2327 Cmetu02g1365 . . . . Cla06g01714 . . Cco06g1956 . . Cre06g2615 . . . . . . . . . . . . . . . . . Cmo10g00081 . . . . . . . . . . . . . . Cla01g01398 Cam01g1460 Cec01g1499 . Clacu01g1484 Cmu01g1379 Cre01g1294 . Csa01g00089 Chy02g02631 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003359 2 2 1 1 2 2 1 2 2 1 2 2 2 0 2 3 2 1 0 2 2 2 1 2 2 0 2 2 2 2 49
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bhi02g00576 Bhi_Chr02 FPKM 23.106173 24.47373 20.46386 23.336571 28.682072 32.326321 28.546831 21.892735 23.17701 21.234795