Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bhi02g00588 GTTTGGCGATAAGGAGGAGACAGGCCATCTCTTTCTTCACTGCCCCTTATCCTCACCTCTTGGGTGTTAAGGCCTTTCCTCTAAAACCCTTCTTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCTTCTTGAATCTCTTCCTTTCATCTCCTTGAGATTCAGTAATGGCTTCTACTTCAGCAACTTCCATTTTGAAGCCTTTATCCAAGCCAGATTCCTGCTTTCTCTCTTTGCCTTCTCTATTCACCGGCAGACCCCCACACACTTTCCTCTCTTTCCCTTCAAAATTCATCCCCTTCAATCTTTCCTCTTCTCATACTTCACTCTTTTCCTCTTCAAAGAAGAAAACCCATCTTCCCTCTGTAGCTCAGACTTCCGACTGGGCTCAAGAAGACGACACCATCACCATTGACCCAAAACTCGGCGACGACGAAGCAGCCGAAGAAGGTCCTCATTGGGAAAATCAAGAGCTCAGTGAAACTGAGTCTCGTATTTCTGATTGGGAAGGTGAAGCTGAAGGTGAAGATGATGGAGGAAGTGAGGCCGAAGGAGATGAGGAAGAAGGCCCTTATGAAGAGCCAAATGAAGATGCTAAATTGTTTGTTGGGAATTTGCCTTATGATGTTGATAGTCAAAAGTTAGCAATGCTTTTTGAGAAGGCTGGGACTGTGGAAATTGCTGAGGTTATTTACAACAGAGAAACAGATCAGAGTCGTGGTTTTGGCTTCGTGACAATGAGTACTGTTGAAGAAGCTGAAAAAGCTGTGGATACATTCAACCGTTATGAGTTATCAGGGAGGCTGTTGACTGTTAATAAGGCTGCCCCGAGAGGTTCAAGGCCAGAACGACAACCTCGAACATTTCAACCCGCTTTCAGAATCTATGTGGGCAATCTTCCATGGGATGTGGACAATGCACGCCTGGAGCAGGTCTTTAGTGAACATGGTAAAGTAGTAGAGGCCCGGGTTCTTTACGACCGGGACAGTGGCCGTTCTCGTGGCTTTGGCTTTGTGACCATGGCTGATGAAACTGGAATGAATGATGCCATTGCTGCTCTGGATGGACAGAGTCTAGAAGGAAGGGCGATCAGAGTAAACGTTGCAGAGGAAAGACCAAGGCGCAACTTCTGAACTGAACCAAGATGAATTCAAGGCCCTTTTTTTCCTCTTGTTCTATGTTACTTTCATTTTTCCTTTTTGTTTCCCAGAAAATGTAGGTGAGTTTTGTAGTGCAATTGTTTAGCCACCTTATTACAGTGTAATTTGATGTCTTTTATGCTTCTAAAATTTCAAGTCTGTTATTAATTTGGATGATGTGTGAGTTACAAGTTCCGCAA 1336 44.84 MASTSATSILKPLSKPDSCFLSLPSLFTGRPPHTFLSFPSKFIPFNLSSSHTSLFSSSKKKTHLPSVAQTSDWAQEDDTITIDPKLGDDEAAEEGPHWENQELSETESRISDWEGEAEGEDDGGSEAEGDEEEGPYEEPNEDAKLFVGNLPYDVDSQKLAMLFEKAGTVEIAEVIYNRETDQSRGFGFVTMSTVEEAEKAVDTFNRYELSGRLLTVNKAAPRGSRPERQPRTFQPAFRIYVGNLPWDVDNARLEQVFSEHGKVVEARVLYDRDSGRSRGFGFVTMADETGMNDAIAALDGQSLEGRAIRVNVAEERPRRNF 321
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 11030577 11032719 - XM_039023069.1 Bhi02g00588 27110

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bhi02g00588 321 CDD RRM_HP0827_like 238 314 - -
Bhi02g00588 321 SMART rrm1_1 238 311 IPR000504 GO:0003723
Bhi02g00588 321 SMART rrm1_1 144 217 IPR000504 GO:0003723
Bhi02g00588 321 MobiDBLite consensus disorder prediction 83 113 - -
Bhi02g00588 321 SUPERFAMILY RNA-binding domain, RBD 230 319 IPR035979 GO:0003676
Bhi02g00588 321 PANTHER OS02G0815200 PROTEIN 1 320 - -
Bhi02g00588 321 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 239 309 IPR000504 GO:0003723
Bhi02g00588 321 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 145 214 IPR000504 GO:0003723
Bhi02g00588 321 SUPERFAMILY RNA-binding domain, RBD 138 231 IPR035979 GO:0003676
Bhi02g00588 321 MobiDBLite consensus disorder prediction 83 139 - -
Bhi02g00588 321 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 143 221 IPR000504 GO:0003723
Bhi02g00588 321 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 237 315 IPR000504 GO:0003723
Bhi02g00588 321 CDD RRM_HP0827_like 144 221 - -
Bhi02g00588 321 Gene3D - 74 227 IPR012677 -
Bhi02g00588 321 Gene3D - 228 320 IPR012677 -
Bhi02g00588 321 MobiDBLite consensus disorder prediction 114 138 - -
Bhi02g00588 321 PANTHER RIBONUCLEOPROTEIN 1 320 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bhi02g00588 - - - csv:101221130 531.176
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bhi02g00588 Bhi-Chr2:11030577 Bhi11g02095 Bhi-Chr11:59376414 6.37E-61 dispersed
Bhi04g01274 Bhi-Chr4:32639106 Bhi02g00588 Bhi-Chr2:11030577 3.00E-07 dispersed
Bhi04g01275 Bhi-Chr4:32639106 Bhi02g00588 Bhi-Chr2:11030577 3.00E-07 dispersed
Bhi07g00931 Bhi-Chr7:31199096 Bhi02g00588 Bhi-Chr2:11030577 2.04E-16 dispersed
Bhi10g01384 Bhi-Chr10:33050951 Bhi02g00588 Bhi-Chr2:11030577 1.02E-07 dispersed
Bhi02g00588 Bhi-Chr2:11030577 Bhi08g01085 Bhi-Chr8:35071874 6.14E-13 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g866 . . Bda06g00624 . Bpe12g00685 . . Bma12g01062 . . Cma10g00083 Cma11g00062 Car10g00075 Car11g00056 Sed08g0071 . Cpe04g01590 Bhi02g00588 Tan09g2319 Cmetu02g0952 . Hepe09g0089 . . Cla06g01709 Cam06g1898 Cec06g1947 Cco06g1951 Clacu06g1854 Cmu06g1795 Cre06g2610 . . Cone13ag0188 . . . . . Blo13g00155 Blo15g00244 . . Bpe07g00865 . . . . Cmo10g00085 Cmo11g00064 . . . . . Cpe18g00878 . . . . . . . . . . . . . . Lsi06g01603 Csa01g00094 Chy02g02627 Cme02g02026
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008467 1 1 2 1 1 1 2 1 1 0 0 1 1 1 1 2 1 3 2 1 1 1 1 1 1 1 0 2 1 2 35
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bhi02g00588 Bhi_Chr02 FPKM 29.16184 32.563213 30.520439 28.122593 47.623981 48.415573 46.815426 45.197037 44.72443 45.041718