Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bhi02g00592 AGACCATTCACCATTCGGCGTTTCCACTTTCCTATCTCTTCGTTTAGGCCTTGGGGTTTTATTTCAAGTTTCCAAAATCGGACTTCTGTTGCCGGCGCGCACAACTCGAAGAGGAGATTGGGAGAAGGAGAACTCCAGTCAGGCGACGGCGAGCACGATTCAACTTTCTTCTCCCGTCTGGCGTGCTGCAACTGAAAGAGAAGTAGAGCACTGTACTGCCGCCAACGGCGAGTTCTTATGAAGTGATGGGTGGTAGAAGTTCTAAGCATGTAAGTTCAAGACGAAGTTCGTCTAGTCGGTCAAACTCGCAGCAGGGGACCTACGGTTATTATCCGCAGTCGCCATATGCTCAATCGAGAAGCACACCACAGCATCTGTATGCACCTCCAACTCCTAGCTATGGTGGAACTCAGGCCCCTGAGTCAAGAAAGAGACTGGAAAGGAAGTATTCAAGGATAGATGATAACTATAATAGTTTAGAGCAGGTTACTGAGGCATTGGCTCGTGCTGGCCTGGAGTCTTCAAATCTTATCGTCGGTATAGATTTCACGAAGAGCAATGAGTGGACAGGTGCAAGATCATTTAACCGTAGAAGTTTGCATCATATTGGAGATGAGCAAAATCCCTATGAACAAGCAATAGCAATTATTGGGCAAACATTATCATCCTTTGATGAGGATAATATGATTCCTTGCTTTGGTTTTGGAGATGCATCGACTCATGACCAAGAGGTTTTCAGCTTTTATCCCGACGAGCGATTTTGTAATGGATTTGAAGAAGTGTTGGGTAGATATAGGGAGTTGGTGCCTCATCTTCGACTTGCAGGACCAACATCATTTGCCCCAATCATCGAAATGGCTATCACAATTGTCGAGCAAAGTGGTGGCCAATACCATGTATTGGTAATAATAGCTGATGGTCAGGTTACAAGAAGTGTTGATACTGAGCGTGGACAGTTTAGCCCACAGGAAAAGAAAACCATTGAATCAATTGTGAAAGCTAGTGAATATCCCCTGTCGATTATACTAGTCGGAGTAGGAGATGGACCTTGGGACATGATGAGGGAATTTGATGACAATATCCCAGCTCGTGCCTTCGATAACTTCCAATTTGTGAATTTCACAAATATAATGTTGAAGAATATGGATAGAGCCAGAAAGGAAACGGAATTTGCTCTTGCTGCACTCATGGAAATACCCTCCCAGTATAAAGCAACACTAGAGCTTGATATTTTGGGTGCCAGTAGAGGAAAGGAAATCGACCGGGTTCCTCTTCCCCCTCCTCGTTATGGACCTAGCACCCAAAAAACCTCCAACTCAAGCAGTTCTCGCCCAATGCAACCCTCATTTGGTGGAGTTGTTCCTGCCCAAACCGCACCTCCTCTAAGTTCGGTTTCTGATGCCCATGCTTGTCCCATTTGCATCTCCAATGCAAAGGATATGGCTTTTGGTTGTGGACATCAGACATGTTGTGAATGTGGACAGGATCTTCAGCTATGCCCCATATGTCGTAGCTTTATCGACACTAGGATAAAGCTTTATTAGCTAAAACTAAAACCCTCTACTGAATTCTTGCTCATGTCACGATAAAACTCCAGCGTCTTGCTTGAGTCATCTATGCAGCTCCTTTATTGGGTATGTTGAGCAATATAATTTTGTAAATATTCATAGTTTTTCCCTCCGATTTTCATTCATGTTTTTCCTTGTCATTCCATAGAATGTGTATAAATGATCAAATTCTTCATGTAAACTAGTTTTGCATTATTCTGAATGTAATTAGAATATCTTTAGTGGGCTA 1797 43.35 MGGRSSKHVSSRRSSSSRSNSQQGTYGYYPQSPYAQSRSTPQHLYAPPTPSYGGTQAPESRKRLERKYSRIDDNYNSLEQVTEALARAGLESSNLIVGIDFTKSNEWTGARSFNRRSLHHIGDEQNPYEQAIAIIGQTLSSFDEDNMIPCFGFGDASTHDQEVFSFYPDERFCNGFEEVLGRYRELVPHLRLAGPTSFAPIIEMAITIVEQSGGQYHVLVIIADGQVTRSVDTERGQFSPQEKKTIESIVKASEYPLSIILVGVGDGPWDMMREFDDNIPARAFDNFQFVNFTNIMLKNMDRARKETEFALAALMEIPSQYKATLELDILGASRGKEIDRVPLPPPRYGPSTQKTSNSSSSRPMQPSFGGVVPAQTAPPLSSVSDAHACPICISNAKDMAFGCGHQTCCECGQDLQLCPICRSFIDTRIKLY 432
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 11070689 11074348 - XM_039022500.1 Bhi02g00592 27114

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bhi02g00592 432 Coils Coil 61 81 - -
Bhi02g00592 432 MobiDBLite consensus disorder prediction 1 62 - -
Bhi02g00592 432 SUPERFAMILY RING/U-box 381 427 - -
Bhi02g00592 432 MobiDBLite consensus disorder prediction 337 372 - -
Bhi02g00592 432 MobiDBLite consensus disorder prediction 350 366 - -
Bhi02g00592 432 Pfam Copine 117 330 IPR010734 -
Bhi02g00592 432 MobiDBLite consensus disorder prediction 1 46 - -
Bhi02g00592 432 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 374 432 IPR013083 -
Bhi02g00592 432 PANTHER RING-FINGER PROTEIN 1 432 - -
Bhi02g00592 432 Pfam Zinc finger, C3HC4 type (RING finger) 387 426 - -
Bhi02g00592 432 ProSiteProfiles Zinc finger RING-type profile. 389 422 IPR001841 -
Bhi02g00592 432 PANTHER COPINE FAMILY PROTEIN 1 1 432 - -
Bhi02g00592 432 CDD RING-HC_RGLG_plant 389 432 IPR045317 GO:0061630|GO:0070534
Bhi02g00592 432 SUPERFAMILY vWA-like 94 276 IPR036465 -
Bhi02g00592 432 SMART VWA_4 92 295 IPR002035 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bhi02g00592 K16280 RGLG; E3 ubiquitin-protein ligase RGLG [EC:2.3.2.27] - csv:101221610 776.163
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bhi02g00592 Bhi-Chr2:11070689 Bhi06g00587 Bhi-Chr6:13196366 0 dispersed
Bhi02g00591 Bhi-Chr2:11070689 Bhi02g00592 Bhi-Chr2:11070689 0 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g862 . . . . . . . . . . Cma10g00087 . Car10g00077 Car11g00057 . . Cpe04g01589 Bhi02g00592 . . . Hepe09g0092 . . Cla06g01707 Cam06g1895 Cec06g1944 Cco06g1948 Clacu06g1851 Cmu06g1792 Cre06g2607 . . Cone13ag0185 Cone19ag0178 . . . . . . . . . . . . . Cmo10g00088 . . . . . . . . . . . . . . . . . . . . . Lsi06g01600 Csa01g00097 Chy02g02625 Cme02g02023
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000334 5 8 3 4 5 2 4 4 4 4 2 2 4 4 4 7 3 7 6 4 5 4 3 3 3 3 4 11 11 3 136
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bhi02g00592 Bhi_Chr02 FPKM 2.933137 1.427585 1.797309 1.243838 1.894421 1.881955 2.3076 0.0 0.0 0.0