Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bhi02g00603 CAGACTGTAATATCTCAATCTTTCACCTTCAAAACTCCCAAATCTTCACTATTTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCCCTTTGTTATTCTGCAATCACTCACCATGGCCGTGGATCCCAACCCCAAAAGTTTCCCCATCCTCTCCTACGTCATGGCCAGAATTCCCTCTCTCAGCCCCCGACAGCCGGCCACCGATTTCGACATCGAACAACCTGCATCTCCCGCCTCCCGCCACACTCCTTCCGATCCTTCCTCATCCTCCTCCCGAATCGTCCATGATATGCCCCATCTCTCCGACCCTAAGGTTTTGGCTTCCATGACCACCGCTATATCTGATGTTGCTCAGACCCGATCCGTCCTCAAAACCCTTGGGGAAAGACCAGACCATGAGGCTGTCGATACTGCCAAGGCTAAGCTCACTGAGGTTGAAGTTAATTTGTCTGCCAAGCTTCAGGAAATCGTGCTTTCGACTAGGCCGGCGGATGTCGAGTTGCTTGAGTGGAGGGCGCATCTTGCTGAGAAAGAGAACGAGTGCCGTCAGGCGGCGGATAAAGAGAAGCAGGTCTATAAGGCTATTGTGCAACTGGATGAGATGCACGAGGCGTATGAGAAGATGTTGAAGGAAGCAGAGGAGAGGTTGGTGAAGATTTACGAGTCGGCCGAGAGAGGGCTGCAGGACGAAGAACAGTTGGATCCAGTAAGCGAAGAGGTCTATGAGGAGGTTGCGAGTATTCTTCAGGACGCGAATGAGAACGAAATCGATCGAATTAGTCTCTCCGGCCGACGCTTGCGGTTCTTGCCTGAAGGCTTTGGACGCATTCGTGGACTGGTTGTGCTTGATATCTCCAGCAATCAACTACAGATTATCCCCGATTCAATATCTGGCTTAGAAAATCTTGAGGAGCTGAATGCCTCATCCAATCTCCTGGAGTCACTGCCCGACTCAATTGGCTTATTACAAAAGCTGAAACTCCTGAATATCTCTGGGAACAAGTTGCATGCCCTTCCTGACACAATATGCCATTGCAGGTCTTTGGTGGAGTTAGATGTGAGCTTCAACAGTCTAACGTACTTGCCAACAAATATTGGCCATGAGCTGGTGAATTTGGAGAAGCTTGCTATCCAGTTAAACAAGCTACGTTCACTTCCCTCTTCTGTTTGTGGTATGAGCTCTTTGCGTTATCTGGATGCTCATTTCAACGAGCTTCATGGCCTTCCTCAAGCAATTGGGAAACTGACACAACTTGAGTATCTCAACCTAGGCAGTAATTTTACTGACCTTACTGAACTTCCACATACATTTGGTGATTTATCCAGCCTTAGGGAACTTGATCTCAGCAATAACCAGATTCACGCTCTACCTGATACATTTGGCCATCTTGAGAATTTAAAGAAACTAAACTTGGAGCAAAATCCTCTTACAATTCCACCAGTGGAAGTGGTAAACAAAGGACCGGATGCTGTGAGGACATTCATGTCCAAGAGATGGCTTGAAATTCTGGAGGAGGAAGATAGAAAAAGAAATCTTGAAATGGACGAACAGACGCAGACTGGATGGCTGACGCGAAGCACCTCTTGGTTGAAGACTTACGTTTCTGGCGTTTCAGAGACCGTGTCTGGTATCGTTGGATCTCCCAGATCTCCAAGAGACTCGTATCTTGATCAACAGCTATAATTTGATGGAGGTCTTTCCCCAATTTTTGCACTCTTCCCCCACTGATTTTGGGTCTCCTTGACGATATGCCTCAATCAGGTTCACTAGATTCTTTATATATAGTGTCGTGAGAACTTCATAAATAGACCACAATTACAAGCAAATTTTGTTGGAGTTTAAAGCCTGGATGAGTTTGGTACAATGCATTTTTGCAGTGTTTCTATTACTTACCATGAATTTCTCCCCATACTGTACATTTATCCTTACTGTTCACTCGAATAACCATATTTCCCCATCCAGTTTGACCTGGATAACTCTCGTTTAGCAGATAAATGATGGTAATAATTTTCACTCCAAA 2021 45.72 MAVDPNPKSFPILSYVMARIPSLSPRQPATDFDIEQPASPASRHTPSDPSSSSSRIVHDMPHLSDPKVLASMTTAISDVAQTRSVLKTLGERPDHEAVDTAKAKLTEVEVNLSAKLQEIVLSTRPADVELLEWRAHLAEKENECRQAADKEKQVYKAIVQLDEMHEAYEKMLKEAEERLVKIYESAERGLQDEEQLDPVSEEVYEEVASILQDANENEIDRISLSGRRLRFLPEGFGRIRGLVVLDISSNQLQIIPDSISGLENLEELNASSNLLESLPDSIGLLQKLKLLNISGNKLHALPDTICHCRSLVELDVSFNSLTYLPTNIGHELVNLEKLAIQLNKLRSLPSSVCGMSSLRYLDAHFNELHGLPQAIGKLTQLEYLNLGSNFTDLTELPHTFGDLSSLRELDLSNNQIHALPDTFGHLENLKKLNLEQNPLTIPPVEVVNKGPDAVRTFMSKRWLEILEEEDRKRNLEMDEQTQTGWLTRSTSWLKTYVSGVSETVSGIVGSPRSPRDSYLDQQL 523
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 11446485 11451711 - XM_039023782.1 Bhi02g00603 27125

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bhi02g00603 523 SMART LRR_typ_2 262 284 IPR003591 -
Bhi02g00603 523 SMART LRR_typ_2 285 308 IPR003591 -
Bhi02g00603 523 SMART LRR_typ_2 378 402 IPR003591 -
Bhi02g00603 523 SMART LRR_typ_2 239 261 IPR003591 -
Bhi02g00603 523 SMART LRR_typ_2 332 354 IPR003591 -
Bhi02g00603 523 SMART LRR_typ_2 309 331 IPR003591 -
Bhi02g00603 523 SMART LRR_typ_2 403 425 IPR003591 -
Bhi02g00603 523 SMART LRR_typ_2 355 377 IPR003591 -
Bhi02g00603 523 SMART LRR_typ_2 426 449 IPR003591 -
Bhi02g00603 523 ProSiteProfiles Leucine-rich repeat profile. 264 285 IPR001611 GO:0005515
Bhi02g00603 523 PRINTS Leucine-rich repeat signature 242 255 - -
Bhi02g00603 523 PRINTS Leucine-rich repeat signature 403 416 - -
Bhi02g00603 523 Coils Coil 130 150 - -
Bhi02g00603 523 PANTHER PLANT INTRACELLULAR RAS-GROUP-RELATED LRR PROTEIN 1 4 507 - -
Bhi02g00603 523 Coils Coil 158 185 - -
Bhi02g00603 523 Pfam Leucine rich repeat 309 368 IPR001611 GO:0005515
Bhi02g00603 523 Pfam Leucine rich repeat 397 439 IPR001611 GO:0005515
Bhi02g00603 523 Pfam Leucine rich repeat 221 275 IPR001611 GO:0005515
Bhi02g00603 523 PANTHER LEUCINE-RICH REPEAT-CONTAINING 4 507 - -
Bhi02g00603 523 SUPERFAMILY L domain-like 213 444 - -
Bhi02g00603 523 Gene3D Ribonuclease Inhibitor 323 390 IPR032675 -
Bhi02g00603 523 Gene3D Ribonuclease Inhibitor 136 322 IPR032675 -
Bhi02g00603 523 MobiDBLite consensus disorder prediction 26 59 - -
Bhi02g00603 523 MobiDBLite consensus disorder prediction 40 58 - -
Bhi02g00603 523 ProSiteProfiles Leucine-rich repeat profile. 405 426 IPR001611 GO:0005515
Bhi02g00603 523 SMART LRR_bac_2 403 422 - -
Bhi02g00603 523 SMART LRR_bac_2 241 258 - -
Bhi02g00603 523 SMART LRR_bac_2 378 399 - -
Bhi02g00603 523 SMART LRR_bac_2 285 304 - -
Bhi02g00603 523 SMART LRR_bac_2 332 351 - -
Bhi02g00603 523 SMART LRR_bac_2 308 327 - -
Bhi02g00603 523 SMART LRR_bac_2 262 281 - -
Bhi02g00603 523 SMART LRR_bac_2 355 374 - -
Bhi02g00603 523 Gene3D Ribonuclease Inhibitor 391 450 IPR032675 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bhi02g00603 - - - csv:101222309 918.687
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bhi02g00603 Bhi-Chr2:11446485 Bhi12g01456 Bhi-Chr12:47161711 1.56E-55 dispersed
Bhi05g00535 Bhi-Chr5:12763490 Bhi02g00603 Bhi-Chr2:11446485 4.63E-40 dispersed
Bhi02g00227 Bhi-Chr2:4303076 Bhi02g00603 Bhi-Chr2:11446485 7.54E-64 transposed
Bhi02g00603 Bhi-Chr2:11446485 Bhi07g01790 Bhi-Chr7:48807270 4.93E-155 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g820 . . Bda06g00618 Bda15g00540 . . . Bma12g01054 . . Cma10g00093 Cma11g00070 Car10g00082 Car11g00062 Sed08g0451 . Cpe04g01581 Bhi02g00603 Tan09g2304 Cmetu05g0163 . . . . Cla06g01699 Cam06g1886 Cec06g1935 Cco06g1939 Clacu06g1842 Cmu06g1784 . . . Cone13ag0167 Cone19ag0164 . . . . Blo13g00144 Blo15g00251 . . Bpe07g00858 . . Bma08g00083 . Cmo10g00097 Cmo11g00072 . . . . . Cpe18g00869 . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006865 2 1 2 2 1 1 2 1 1 1 1 1 2 1 1 2 0 2 2 0 1 1 1 1 1 1 1 2 1 1 37
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bhi02g00603 Bhi_Chr02 FPKM 26.393421 29.959204 47.002819 47.560341 41.963425 37.003349 40.522278 26.016039 25.873198 26.694185