Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bhi02g00606 ATATATATATGATAGGTTGGGAAGGAAAACGGGTATCCATGCTTGTTTGAAAAGGAGGTGCGATAACCGAAGCAAGGGGTATATATATATATATATATAGAAGATAGGTTGGTGAAGAAAACGGGTGTCCATGCTTGTTTGAAAAGGAGAAGGTGTAATAACCAAAGCAAGAGGTAAGGGTGGTGAAAATTAGAAAGTGGATTCAAAGCGAGGGAAGAGGGCCCTTTGTTCCGATGAATCGGAGGATGAAAATCCGTTCCCGATCTACTCAGCTAGATCTGAACATGATATGTCAGCCATGGTTTGTGCGTTAGGTGAAGTGATAAGGAGTGGGAGTGGGAGTAGCAGAAGCCCGACAGTAGTAGAAGCAGAATATAATTGGCCACAATCGCAATCGCAGCAACCAGATCATGAAGAACAAGTGAAAAGAGAAAGTCGACATTATCGAGGAGTAAGACAGAGACCGTGGGGAAAATGGGCAGCTGAGATTCGTGATCCAAAAAAGGCAGCAAGAGTGTGGCTAGGCACCTTCGACACTGCTGAGGCTGCGGCACTTGCTTACGATGAAGCTGCCCTAAGATTCAAAGGGACAAAAGCCAAGCTCAACTTCCCTGAGAGACTCACCACTCCACCTTCCTATGCCTATCATCATCCCACCTATATGCTCAATCTCCACTCCTCAACTTCTCATCATCCTCACGATCCTTCTCATCATCACCATCACAAAAATTAAGCCACCGCCTGCAACTATTTAAATTATGATATATATCCTTCTCTTCTCCTCAACTATAAGTTAGTTCATTATTCACAACGTCGAGAGAGAGAGAGAACAAGCGTCGTTTTACATTTACATATACTTTTGTAACTTAATGCGTCCATGTTAAATAATATACTACATAATATATGTCATGTAATTGTACGCTTATATTGCTTTTATGTTGCACTTTTCTAATAACAATTAAACTTAAGTTACGTTGAA 979 41.27 MSAMVCALGEVIRSGSGSSRSPTVVEAEYNWPQSQSQQPDHEEQVKRESRHYRGVRQRPWGKWAAEIRDPKKAARVWLGTFDTAEAAALAYDEAALRFKGTKAKLNFPERLTTPPSYAYHHPTYMLNLHSSTSHHPHDPSHHHHHKN 147
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 11636867 11637845 - XM_039024024.1 Bhi02g00606 27128

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bhi02g00606 147 Pfam AP2 domain 51 100 IPR001471 GO:0003700|GO:0006355
Bhi02g00606 147 PRINTS Ethylene responsive element binding protein signature 52 63 IPR001471 GO:0003700|GO:0006355
Bhi02g00606 147 PRINTS Ethylene responsive element binding protein signature 74 90 IPR001471 GO:0003700|GO:0006355
Bhi02g00606 147 ProSiteProfiles AP2/ERF domain profile. 51 108 IPR001471 GO:0003700|GO:0006355
Bhi02g00606 147 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF110 31 138 - -
Bhi02g00606 147 SUPERFAMILY DNA-binding domain 51 109 IPR016177 GO:0003677
Bhi02g00606 147 MobiDBLite consensus disorder prediction 29 54 - -
Bhi02g00606 147 MobiDBLite consensus disorder prediction 128 147 - -
Bhi02g00606 147 Gene3D AP2/ERF domain 50 110 IPR036955 GO:0003700|GO:0006355
Bhi02g00606 147 PANTHER DNA-BINDING DOMAIN 31 138 IPR044808 GO:0003700|GO:0009873
Bhi02g00606 147 CDD AP2 51 109 IPR001471 GO:0003700|GO:0006355
Bhi02g00606 147 SMART rav1_2 51 114 IPR001471 GO:0003700|GO:0006355
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bhi02g00606 - - - bhj:120071654 261.151
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bhi02g00606 Bhi08g01627 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bhi02g00606 Bhi-Chr2:11636867 Bhi03g01417 Bhi-Chr3:29582264 3.10E-34 dispersed
Bhi02g00606 Bhi-Chr2:11636867 Bhi09g00274 Bhi-Chr9:5718487 1.15E-26 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g17 . . . . . . . . . . Cma10g00010 . Car10g00007 . Sed14g0033 . . Bhi02g00606 Tan09g2439 Cmetu02g1402 . . . . Cla06g01787 Cam06g1985 Cec06g2035 Cco06g2043 Clacu06g1942 Cmu06g1882 Cre06g2693 . . Cone13ag0267 Cone19ag0251 . . . . . . . . . . . . . Cmo10g00008 . . . . . . . . . . . . . . . . . . . . . Lsi06g01687 Csa01g00006 . Cme02g02116
Vvi17g772 . . . Bda15g00551 . . . . Cmo13g00910 Cmo18g00136 . Cma11g00091 . Car11g00083 Sed14g0033 Cpe20g00250 Cpe04g01563 Bhi02g00606 Tan09g2439 Cmetu02g1402 . . . . Cla06g01667 Cam06g1852 Cec06g1904 Cco06g1909 Clacu06g1811 Cmu06g1752 Cre06g2571 . . . . Lsi02g00383 Csa01g00863 Chy12g01259 Cme12g01683 . . . . . . . Bma08g00096 . . Cmo11g00090 Cma13g00879 Cma18g00178 Car13g00719 Car18g00169 Cpe09g01017 . Bhi08g01627 . . Lac10g0461 . . . Cla01g01310 Cam01g1420 . Cco01g1470 Clacu01g1375 Cmu01g1283 Cre01g1256 Lsi06g01560 Csa01g00144 Chy02g02585 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003032 0 2 2 0 1 3 2 2 2 1 1 2 2 2 2 2 2 2 1 2 2 2 2 2 2 1 1 3 2 3 53
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
396 PF00847 AP2 2.30E-15 CL0081 Bhi TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bhi02g00606 Bhi_Chr02 FPKM 1.698795 2.84529 2.9148 2.927834 4.741627 3.012982 3.742027 2.465419 1.854814 2.06833