Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bhi02g00671 AACTTTCAACTCAGAGCTGGGCCAATGAAAATCTAAATCCTTTTTTTCTTTTTCCCTAAATGTTTGATTTGTTTATGCTGTATAGACGAGTAGTAATCAATGCACATACAGATTTATGAATAAGAATCATCAAAAGGGGTGGGGGCAGACAGCTCACCACCAGTTTTGGGGCAAAATCATTTGCTTTCCTTTTCCCCTTGAAAAATGAACAAAAAAATATTTGCATGTTTTTCTTTTTTGTGGGGGGTTTCTAATGAGCCCTTAAGTTTAAATTCCCAAAAGAAAATTTTTAGGAAAAGGAAAAGGAAAACTCAAGTGGGGAGTTTTGTCTCTCTTTAGTCTCAAAGGGTTTTGGTATATGTACATTTATCTGTTTTTCCTTGTAATTTGTAACTCGCTTGAAACCCCAAAAAAGAAAATATGCCAAGAAATGTGAAACACAACACAATGTAGGCCTATCCCACTTCCTCTGGTTGTCTTCACCAGCATCCATTTTTGTATAACTTTCTTCATTTTCTTAGTTTGCTGAAAGTTTGAAAGCAACAAATAGCTGTCTCTTTTAATATCAACCTTTCTCCAACTTCCAAATTTTAAACAAACCCTAACCAATATGAGAATAAGGAGAGAAATAAGAAAAAGAAAAAAAGGAAAAGGAAGATAAGGTAAATTCAGAATAAAGTTGGCGGCTCTTTTTGGGCTATTCATGGAGTTGCAGTTTCCCACTTCCCTTCAACAAAAGCTCTCTCCAACTTTTTTGCATCACAGCCACCTTCAATCCTAGCTAAAATTGACATCTTGTAGACAGGTGCAACAAGTGATTCTTCTTGAGTAACCTACACCCTAGCTTTTTATGGGGGCTTTCCTCCTCCTCCTTTGGCTTTTCCCCTTGACCACAAACTTTAATTGTTTGGTGGAATCCTTGTCAGTGAATGGATGGTTGTAAAATAGCAACCCCATTTGTGTTCTGCTGCCCTAGTCTGCAAGTACTCTCATCCTTCATTTTCTTAACTCTCAACTTATTATTTTTTTTTAGTCTTGTGACTTCTTCTTCTAATTCCTCTCCAATCTACTTGGAGTTATATCTGCAACTGTAGTTTTACTACTGATATGTTTCAAGTTTGCTAAAAGGAAAGAGCCACAATCATCAATGACTTGATGTTTATTTATTTTAGTCTTTTGACGTCTTCAAAATCCTCCAATCTACTTGAAGTAATATCTGGAACTGCAACTCCACTGATGATATATTTTCAGTTTGATAAGATCAAAGAGCCATAATCACCACTGACGTGATGTTTTTGCTTTTGGTTTAAGGAAGATGCAAATAACTGCCTTAAAGATTCTGTTGCTTCAATTCTTGTATTGTTGCTGTCTGTATGATTAGTGGGCTCTGTTCTTGTTATATGCATTTCTTGTCAGCCATAAGATTTCTGTGTTCTTTAGTTGAATATAATCCATTCATGAAGTCATCAGAAAAGTGATTCAAACTCTGAAAAGGGTGTTCATTTTTAAGTGGAAAAGAAGTGAAGAACTGAAATATTCTCTATGGACTGGAACTTGAAGACCCCATCTTGGGATTTCACTCAATTGGAACAAGATGCATTGAAGAACATTAATACAATAGGTGCATCCAGCAGCTTTGTTGAACATAGAACGACTTCTGGGGATTTCTCGGTTGATTTGAAACTCGGCCAAGTCAATAATCTGGGAACAAAATATGTAGTCAATAAGCCAGGAGTCTTTAAAATGGCACCGTCCCCTTCAGAACCATCAAAGAGGGCAAGAGGATCTGGAAATGGGGCTCAGCCTTCGTCATGCCTTGTTGATGGATGTGTTTCAGACCTTAGCAATTATAGAGATTACCACAGGCGCCACAAGGTCTGCGAGCTCCATTCAAAGACTCCCCAGGTTACAATTGGTGGCCTAAAACAAAGATTCTGTCAGCAGTGTAGCAGGTTCCACTCACTAGACGAATTTGATGAAGGAAAGAGAAGCTGTAGGAAACGTCTCGATGGACACAATCGAAGGCGAAGGAAGCCACAGTCAGACTCCCTATCACGAAGTATTTTGTCTCCTTACCAAGGTTCTCAACTTTTACCACTTTCTACCTCACATGTCTATCCATCTACAATTGTTATGAGCCATTCCTGGTGTGATATTGCCAATAATACTCAGATCGATGCAAGGCTTCACGTTCAGCAAGAGCCAACCCACTTCCCTGATAAACACAACATCTATCTTGGATCATCGTCAAATGATAGCATCCATAAAATCGGAAAGCAGGTCACATTTATGCAAAGTGACAATCCAGAATCTTCATTCAGCCAGCCCCTTGTCACAACCATTGATTTTTCAGAAAATGGAGGTGGTCGAAGGAAAATGTTATATGACAAGTTTGCAACTCCAGGCCATGAATCGAATTGTGCTCTCTCTCTTCTGTCATCTTTGCAGACACAGTCATCTGGGATTGGTTTTAGTGAAGCCGAGCAGGACCGTCATCTTATATCCTTCCTGCAGCCATTAGATGTGAGCTTAGGTCATCACAACAGATTGGAGCCAGTTAATTCAGTACTGAATGGCAGTGTGAGTAATGCTGATATTAATTGCTCAGGAATGTTTCACATTTCATCTAATGATGGAGGGAATGATGCTCCTCCACCATCCCTTCCTTTTCACTGGCAGTAAAGTAACTTCAGTAAACAAAAACTGATCTTTTTGTGTAAAAATGAATGAGCAAACAGTGCTTCTATAAGCAAACAGTGCTTCTATAAACCCATGTTCATGATATCCA 2788 38.63 MDWNLKTPSWDFTQLEQDALKNINTIGASSSFVEHRTTSGDFSVDLKLGQVNNLGTKYVVNKPGVFKMAPSPSEPSKRARGSGNGAQPSSCLVDGCVSDLSNYRDYHRRHKVCELHSKTPQVTIGGLKQRFCQQCSRFHSLDEFDEGKRSCRKRLDGHNRRRRKPQSDSLSRSILSPYQGSQLLPLSTSHVYPSTIVMSHSWCDIANNTQIDARLHVQQEPTHFPDKHNIYLGSSSNDSIHKIGKQVTFMQSDNPESSFSQPLVTTIDFSENGGGRRKMLYDKFATPGHESNCALSLLSSLQTQSSGIGFSEAEQDRHLISFLQPLDVSLGHHNRLEPVNSVLNGSVSNADINCSGMFHISSNDGGNDAPPPSLPFHWQ 379
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 12991699 12995165 + XM_039023447.1 Bhi02g00671 27193

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bhi02g00671 379 ProSiteProfiles Zinc finger SBP-type profile. 88 165 IPR004333 GO:0003677
Bhi02g00671 379 MobiDBLite consensus disorder prediction 155 174 - -
Bhi02g00671 379 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 13A ISOFORM X1 5 379 - -
Bhi02g00671 379 MobiDBLite consensus disorder prediction 69 89 - -
Bhi02g00671 379 Pfam SBP domain 91 164 IPR004333 GO:0003677
Bhi02g00671 379 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 5 379 IPR044817 GO:0003677
Bhi02g00671 379 SUPERFAMILY SBT domain 90 170 IPR036893 GO:0003677|GO:0005634
Bhi02g00671 379 Gene3D - 81 152 IPR036893 GO:0003677|GO:0005634
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bhi02g00671 - - - csv:101222787 714.916
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bhi02g00669 Bhi-Chr2:12991307 Bhi02g00671 Bhi-Chr2:12991699 0 dispersed
Bhi02g00671 Bhi-Chr2:12991699 Bhi08g01507 Bhi-Chr8:43476394 6.32E-91 dispersed
Bhi02g00670 Bhi-Chr2:12991309 Bhi02g00671 Bhi-Chr2:12991699 0 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g97 . . . Bda15g00631 . . . . . . . . . . . Cpe20g00300 . Bhi02g00671 Tan09g2020 . . . . . . . . . . . . . . . . Lsi02g00513 . Chy12g01157 . . . . . . . . . . . . . . Car13g00660 . Cpe09g00953 . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004259 1 4 2 1 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 4 1 1 43
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
403 PF03110 SBP 3.50E-31 No_clan Bhi TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bhi02g00671 Bhi_Chr02 FPKM 16.762636 19.034359 29.519928 30.554291 50.582417 49.966076 56.706413 13.853066 14.05163 16.182583