Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bhi02g00682 AATTAAGAGTTATATGTATGATTCTGATTAGTCATTAAGCAAAGTACTGGTGGTCTCAATTGGATTCAAAATATGCATTAACTAAGCAAGCGAGAGGGTGAGGCACCACCACAGTGATAGGGTTAAATTGGTACTTGAACATACAAACAAAAGAGTCACCTCCTGCACAGCAGGCAGCAGTGCCCATATTTTATATTTACATGCGCTGCGGCAGCGCCACCTAGTTAGTTACGCAAACGCTGTTGAAGAAGTTGCGCTGAGTTTCTGTGGACAAGACTATGAGGTTGAGGGGAGGGCATTTCCAGTAATTTGGTGAAGGGTTGCCTTTATAGGGTGCAGCAGCTCTCTTCCTACCCACCCCTTGATCTTGTTTTCTCTCTCTGTAGCCTCTTGTCTCCTGAGTCCTGTGAGTTGAGATTTGCGACCCCAGAGCCTAGCAAAGGAAGGTCGGAAAAAGAGCGACAGGTTGCGTTGTTTGTAGTTGTGTACCCATACGCATACACACAAACACATACAGTAACACTACATATCCAATTCCAGTAATGGATCCAGAAGCCCTCTCCGCCACTTTGTTCAAATGGGATCCTCGAGGAATGGTGGGGGGCGGCAGCGGCGCACCCCTTCCAGCACCACTGCCCCCCTACTCGCTGCGGCCCAGGGAGTTGGGATTGGGAGGCCTTGAGGACTTGTTCCAGGCTTACGGAATCAGGTACTACACCGCTGCTAAAATTGCGGAACTTGGATTCACCGTCAGCACCCTCCTGGACATGAAAGACGAAGAGTTGGAGGATATGATGAACAGCCTATCTCACATTTTCCGCTGGGACCTTCTGGTGGGTGAGAGGTACGGAATTAAGGCTGCTGTAAGAGCCGAGCGCAGACGTCTAGATGACGAGATCGATTCCTCCAGGCGCCGTCACCTCTTGTCCAACGATACCACTACCAACGTCGTCCTCGATGCCCTCTCTCAGGAAGGCCTATCTGAAGAACCGGTGCAGCAGGAGAAGGAGGCGGTGGGAAGTGGAGGTGGAGGAGCGTGGGAGGCAGTTGCAGCCGCTGAGATCAGGAAGAAACAGCGAAGGAGAAACGGATCAAAAGAGAAGCAGGTGATGGTGGTGGAGGAGGATCACGATGAAAACGAGGGAGCCGGGGACGAGGAGAATATGGAAGTCAGCGAGAGACAGCGGGAGCATCCATTCATCGTAACCGAGCCAGGGGAGGTTGCACGAGGAAAGAAGAACGGCCTCGACTATCTCTTTCACCTATATGAGCAGTGTCGTGAATTTTTGATCCAAGTCCAGAACATTGCCAAGGAACGAGGAGAAAAATGCCCCACTAAGGTGACGAACCAGGTGTTTAGATATGCAAAGAAGGCGGGAGCAAGTTACATAAACAAGCCAAAAATGAGGCACTACGTGCACTGCTATGCGCTGCACTGTCTGGACGAGGAAGCGTCGAACACATTGAGGAGGGTTTTCAAAGAGAGGGGTGAAAATGTGGGAGCTTGGCGACAGGCATGCTATAAGCCTCTGGTAGCCATAGCAGCTGCCCAAGGTTGGGACATCGATGCCATTTTCAACGCACATCCACGCCTCGCCATCTGGTATGTGCCTACCAAACTCCGCCAACTCTGCCATGCCGAGCGCAATGGTTCCACAGCCTCCACCTCCGCTGCCGGATCTCACTTGCCTTTTTAATTTCATACGTCTCCTCGGAAATGAGAGATGATAGCTTGGCCGCTGTGAAGGAAACTAGGACCTTGTTGGAATATGGAATGCAAAATGCTACTCTCTTTTTTCATATCATATATTCAGATATAATATAATAATGTGTAGACCCCACTCCACTTCCATAAAAGTTTGCTTTAATTT 1871 49.97 MDPEALSATLFKWDPRGMVGGGSGAPLPAPLPPYSLRPRELGLGGLEDLFQAYGIRYYTAAKIAELGFTVSTLLDMKDEELEDMMNSLSHIFRWDLLVGERYGIKAAVRAERRRLDDEIDSSRRRHLLSNDTTTNVVLDALSQEGLSEEPVQQEKEAVGSGGGGAWEAVAAAEIRKKQRRRNGSKEKQVMVVEEDHDENEGAGDEENMEVSERQREHPFIVTEPGEVARGKKNGLDYLFHLYEQCREFLIQVQNIAKERGEKCPTKVTNQVFRYAKKAGASYINKPKMRHYVHCYALHCLDEEASNTLRRVFKERGENVGAWRQACYKPLVAIAAAQGWDIDAIFNAHPRLAIWYVPTKLRQLCHAERNGSTASTSAAGSHLPF 384
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 13373522 13376006 - XM_039024119.1 Bhi02g00682 27204

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bhi02g00682 384 PANTHER PROTEIN LEAFY 1 384 - -
Bhi02g00682 384 Gene3D Protein LEAFY 210 378 IPR038276 -
Bhi02g00682 384 MobiDBLite consensus disorder prediction 194 213 - -
Bhi02g00682 384 PANTHER PROTEIN LEAFY 1 384 IPR002910 GO:0003677|GO:0006355
Bhi02g00682 384 Pfam DNA Binding Domain (C-terminal) Leafy/Floricaula 209 372 IPR035209 GO:0003677
Bhi02g00682 384 Pfam Floricaula / Leafy protein SAM domain 43 118 IPR035079 -
Bhi02g00682 384 Coils Coil 105 125 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bhi02g00682 - - - cmax:111484867 682.945
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Bhi02g00682 . 1 377 Orphan Transcription Factor Family AT5G61850 69.9 6.3e-124 441.8
Bhi12g02502 . 1 167 Orphan Transcription Factor Family AT1G06040 68.4 9.3e-61 230.7
Bhi12g02501 . 1 161 Orphan Transcription Factor Family AT1G06040 70.2 2.1e-60 229.6
Bhi01g03200 . 1 126 Orphan Transcription Factor Family AT1G06040 61.9 1.7e-38 156.8
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007487 2 1 2 1 2 1 2 1 1 1 1 1 2 1 1 2 1 0 2 1 1 1 1 1 1 1 1 0 1 1 35
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
404 PF17538 C_LFY_FLO 8.40E-108 CL0123 Bhi TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bhi02g00682 Bhi_Chr02 FPKM 12.399336 12.500168 13.61326 14.753325 20.287273 23.451649 22.932688 14.061464 15.279261 16.007599