Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bhi02g00749 ATTCTTCTCTCTAAAGCCTAACCCCAAAAAAAAAAAAAAAAGGTTCCTTCCTCAAACTCTCTCCATCCATGGATTCCTTCTTCTTCCTCCCGCTATTTCCCGCTGTTTATTGATTTCATGCTTGCAGGTCTCTGTTTGTTCATTTGCTCGTAATGTCGTGGATTCACTATACCTTCCGATTCTTCATCTGAGGGAGCTGCTCTCGATCCATTAAGATCCAGTATGATGAGTATGGAGGAGAAAAGGAATTTGGTATATGAAATATCAGATCAGCCACATGCTTCTGAACTGCTTCAGTCCTGGAGTCGACATGAGATTTTAGAGATCCTGTGTGCAGAGATGGGAAAAGAGAGGAAATATACTGGATTAACAAAACTGAAAATAATTGAGAACCTTCTGAAAATTGTTGGTGAAAAGAAATCAGGGTCAACTGAGGATGTAACAGACCTCGACAGTCAGTCTTCTCCTTGTCTTTCCCCAAAGATTACTAAAAGGCAAAGAAAAATTGATCAGTCAGCAGGGGTACCTGTTCCTGTGAACCATATTCCAATCAGTAACACTAGGAATGACTCAAATATTGCAGTGTACTGCAGAAATTCGGCATGCAAAGCTACCTTAAATCAAGATGATATATTTTGCAAGAGGTGTTCATGCTGCATCTGTTATCAGTATGACGATAATAAGGATCCTAGTCTATGGTTAAGTTGCAGCTCTGATCCACCATTTCAAGACACTTCATGCGGTATGTCGTGCCATCTTGAATGTGCATTGAAACATGAAAAATCCGGGATTCCCAGAGGACAGCAGACTGGAATTGAAGGGACTTTTTGTTGTGTATCTTGTGGAAAAGTCAATGACTTGCTTGGGTGTTTGAGGAAACAATTGATGAAGGCAAAGGAAACCAGAAGGGTGGATATACTATGTTACCGCATCTCTTTAAGCAAAAAACTTTTGGGTGAAGGTGAAAAGTATCAAGACGTTTATCAGATTGTGGATGAGGCTGTGAAGAAACTTGAAGCTGAAGTGGGTCCCTTGACTGGTGTACCGGTTGGTACGGGCAGAGGAATAGTGAACAGGCTTTCTTCAGGACCAGAGGTTCAGAAACTCTGCACGATAGCCATTGATACACTGGACTTCTTGCTCTCCACGAAGATCTTACATCAGTTGCCCAGTTCCATGATACAAGTTTCTAATTTGGTAGCTACAAACTTCTTAAGGTTTGAAGATGTTGATGCAACATTTGTTACGGTGGTCGTGGGCACTGAAGATGTTTCTTCTGGAAAAACTGCTGGTTACAGGCTATGGCATCGAAAGGCATGTGAAACAAATTACCCTATTGAACCAACTTGCACCTTGTCTCAACCCAATTTGAGGTTTGTCGTCCGAGGACTAACCCCATCTTCAGAATATTATTTCAAAGCCATTTCCTTTGATGGGACAGGAGATTTAGGGATGTGTGAAGTTCAAGTCTCAACTGCCACTGCTCGGGAGGACGACACAAGTTGCTTGGTGATTGAAAGAAGTCAGAGTCCTGTGACCAACTTCAGTGAGCTCTCTAATCCTTCTTCAGTAGAAGATGAAACTAACAATGTATTGCCCTGTAGCGACCAGAACGATTGTCAAACAGAGAGATATCTTTCTTATTGCAAGGATTCTAACAAGTCCATCACTGCTAACCTGTCTGAGGATGCAATAAACTGCACCACTGTCAGTGGAGGGGGAACAACAAAAGATTCTGTTTCTTTGTTGGATGAGGAACACGTTACAAGAAAAAGCGGCACGCTACCTGCTGCCAATGTTTCAAAACTTGAAGACAGACATTCTTCAGAGGTCCATATTATTGAAGATACAAGCATCAATAACGGGTCAAATACCGCCATTCAAAAAGGGAGTAAATGCACACCATTTGTTAGCAGCTCTGAGGCTGGATTGCCAGTTACTCCTTGCAAGATGGAAATACTCAAGGATGTTCTTGGAAGGAGTGGCCGATCAAAGTCCAGTGCCAAGGATCGAGATAATGGCTCGGGAAGAGAGGAACTCCGACATGGCAGCACATCTAAGAAGAGAAGTGTGGAGAGGCAAGATGCGGATTGTACGGCAAATGGTATTTCAGATAAGGATTTTGAGTATTATGTAAAATTGATTAGATGGCTAGAATGTGAAGGACACGTAGAGAAGAACTTCAGACAAAAATTCTTAACTTGGTACAGCCTGAGAGCCACGACACAAGAAGTTAGGATTGTGAAGGCCTTTGTTGATAACTTCATTGAAGATCCATCAGCTCTTGCAGAGCAACTTGTGGATACCTTTTCAGAATGCATTTCAAGCAAGAAAACATGTGCTGTGCCCGCTGGATTTTGTATGAAGCTTTGGCATTGATCATCTCGAAAAGCAACAAATTTAACAAGTCCTAGATTGGAATTCCATCAGTCGTAGGCATTCTTTAGATACTTTTTCTTTCATTTTCTTTCTCCATTTAAACTGTCATCAATTGAATTGGGCATCATCTGAGCTCTATTTTAGCATTTCTATGAAGATAAAATGTCATCCACATTCGCCATTTTAAACATTTCGAACAGATTTGTAGATGAGTATGATTTAACATTCTTACTTACTCATTGATACCATTTAGTAATTAATTTATGAAACTTGTTTATGGA 2660 40.86 MMSMEEKRNLVYEISDQPHASELLQSWSRHEILEILCAEMGKERKYTGLTKLKIIENLLKIVGEKKSGSTEDVTDLDSQSSPCLSPKITKRQRKIDQSAGVPVPVNHIPISNTRNDSNIAVYCRNSACKATLNQDDIFCKRCSCCICYQYDDNKDPSLWLSCSSDPPFQDTSCGMSCHLECALKHEKSGIPRGQQTGIEGTFCCVSCGKVNDLLGCLRKQLMKAKETRRVDILCYRISLSKKLLGEGEKYQDVYQIVDEAVKKLEAEVGPLTGVPVGTGRGIVNRLSSGPEVQKLCTIAIDTLDFLLSTKILHQLPSSMIQVSNLVATNFLRFEDVDATFVTVVVGTEDVSSGKTAGYRLWHRKACETNYPIEPTCTLSQPNLRFVVRGLTPSSEYYFKAISFDGTGDLGMCEVQVSTATAREDDTSCLVIERSQSPVTNFSELSNPSSVEDETNNVLPCSDQNDCQTERYLSYCKDSNKSITANLSEDAINCTTVSGGGTTKDSVSLLDEEHVTRKSGTLPAANVSKLEDRHSSEVHIIEDTSINNGSNTAIQKGSKCTPFVSSSEAGLPVTPCKMEILKDVLGRSGRSKSSAKDRDNGSGREELRHGSTSKKRSVERQDADCTANGISDKDFEYYVKLIRWLECEGHVEKNFRQKFLTWYSLRATTQEVRIVKAFVDNFIEDPSALAEQLVDTFSECISSKKTCAVPAGFCMKLWH 718
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 15007758 15013559 - XM_039022959.1 Bhi02g00749 27271

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bhi02g00749 718 CDD FN3 331 408 IPR003961 GO:0005515
Bhi02g00749 718 PANTHER VIN3-LIKE PROTEIN 2-RELATED 2 718 IPR044514 GO:0010048|GO:0040029
Bhi02g00749 718 MobiDBLite consensus disorder prediction 586 621 - -
Bhi02g00749 718 CDD PHD_VIN3_plant 143 207 - -
Bhi02g00749 718 SUPERFAMILY Fibronectin type III 332 407 IPR036116 GO:0005515
Bhi02g00749 718 Pfam PHD - plant homeodomain finger protein 123 241 IPR032881 -
Bhi02g00749 718 PANTHER VIN3-LIKE PROTEIN 2-RELATED 2 718 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bhi02g00749 - - - csv:101220456 1264.98
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bhi02g00749 Bhi-Chr2:15007758 Bhi06g01254 Bhi-Chr6:37020501 0 dispersed
Bhi02g00749 Bhi-Chr2:15007758 Bhi02g00750 Bhi-Chr2:15007758 0 tandem
Bhi02g00749 Bhi-Chr2:15007758 Bhi06g01253 Bhi-Chr6:37020501 0 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Bhi06g01253 . 4 471 PHD Gene Family AT4G30200 53.0 9.6e-129 458.4
Bhi02g00749 . 2 456 PHD Gene Family AT4G30200 53.3 2.8e-128 456.8
Bhi02g00750 CCT 2 456 PHD Gene Family AT4G30200 53.3 2.8e-128 456.8
Bhi06g01254 CCT 1 450 PHD Gene Family AT4G30200 52.7 4.6e-123 439.5
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002200 1 4 1 1 1 2 3 2 2 2 2 2 2 2 2 3 2 2 3 2 2 2 2 2 2 2 2 4 4 1 64
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bhi02g00749 Bhi_Chr02 FPKM 16.613792 21.016438 20.968035 18.984838 7.276603 8.161704 5.833514 41.037296 36.804886 37.353786