Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bhi02g00890 CCAATCCCAAGTTGAGGAAAAGAGGGTCCCACAAACCCACTCGATCGGACTGTCGTGTCCTCTTCCTTTCGTCCTTTGCCTCGCCTTCCGCTCCTAAATTTTGCTCTCTGCATTTTTTCATAACATTGTCCCAAACCCCTTCTTCCTTTCTCTCTCTCTTCACCGACGGTGTGACGGTGGTGGTGGAGGAGGAATTATCTCATTGGTAGCTTTCCCAGACGCGTATTTCAGAAGAGAGAAAAAGTGGTTAGGATGTCAGGATAGGTTTTACTTTTGATGGCGTGTGAAATGGGTATTATCTATGGATGTAATAGCAAAACCCTATTTCTCTTTCTAATTCCCAGTTTCTGTTGCCGTCTATGATGGAAAGAATTTGTTTTTTTTTTACATATGCACAGAAGGTGTTTGATGAAATGTCTGACAAAAGAAAAAAAAGGAAAAAAATTCATGGGGAGGGTTAAAATGGTTGTTATTTTGTGGGTTTTATGGAATCCATGAATGGGTGGGTTTTAAGGTGATAGATCTGACGAATTAAAGGGAAATTGTTGATGGGTTTTGTTGCGTTTGAATGAATGAATGATGAAAGTGGAAGGAGATGGAGGGGGAGAGAGAGCAAAAGGGCAGGAGAGTGACAGAAGAGAGTGAGCACACGCTGCAGCCAAATGTATGAAAGGCATACCTTTGCGGGTGCGTGCTCACTTCTCTTTCTGTCAGCTTCCCCATAATTTTCCCTTTTGCTCTCTTCTCTCTCTCTTTCTTTCTACGTTTCTTTCTTTCCTTCGTTCTATCTTTCCCTCTGGTTTATACTGTCAGAAGGGCAGATGTCTATCGGCTATCGCTCCGTTCCTCTCTTTATTGGGTACCCTTTTCTTTTTAACTCCTCTGATGGACAAATGGAACAATAACACTGGTGAAGTTGAAGCGGCCTCTTCGAAGTTTCAAACGGTGCGCCACTGTAGTGTACAATTTCGCCTTTCACACTCTTAATTTGTCAGTTTGTTCTCATCCATATCAATATTTATTATATATTATATTCTTTGGCTATTGCAATTTTCCATGGAAGCCCTTTTCTTTTCTTTTTCTTGACATTGATTTCCATGGAAACTTGGTAGCGCGACTTTTGATGGTCCTCTCCTGCTTATATATGGAATTTTTGAAGGTACAAAACCAATTACTATTCATATTTAACGGAAAATCCTTCAAATGTCGTCGTTGTTTAATGTATAACCCTGATTACTGTTCCCATCTAAACCATAAACTCTCGGCTATGTTTTGGGGTTTCCTTTGGTATAGGCGTATAGCGCACACACTGTGTTTTTATTATTTTCATTTTTATTTTATTTTGGTTTCCTGAGATTTGGGTTATTCCATATCTGACCAAATATTTCTTTTGCTCTTGAGAATATTGGAATCTGCGGATATATGTATGCAGGTATTATTTTTCGTTGCTGAAGAGTTTTGCAGATTTTGTTTTGTTATTTACTTTCCTAAAACGAAAAATTTCTTGCCGTCGTGGGCTACTACTTGGAGAAGGGTGTGAAACTGAACCGCCTCGAGTGCTGAATATGGCAACAATCTCTCGTTATGGATGCCTGAAGGGTCTGCTATTTTCGAGTCCCAGATATGGAGTTTCCAAACCGGAAAATTTCCTCATTCAGCACTTGTTTGACGTTGGGAGGCAACAACGTGCTTATTTTTCTCTTCACTTCAGATTAACTATCACCACCACCACCCCCATTGTCCGGTTAAGAGTGCAAGTTAGAATCTCCTAGGGAGCAGCAGGGAAGATGACTGATTCTGATACTGTGGGATAGGGTCGAGTAAGTTGGAAGATATTAAGCTTATTTATGGTGTTTATGGGAATGTCCATATGGCCTGCGTAGTGTTCTTCTGACTACTACAACTACCGGACCGCAGCATTTTATATTGGATACTGATACTGTTTCAGATTTTTGTGCGTGGGCACTCCTATAGGGTTTGTGCGTCGGCATTCCTGTATGGGGTTTGAGTTTCAGTCTCAGTCTCAGACAAGAGGGAGACAATTGAACCTCAAAACTGCGTATTATATGCTGCCATCGCTTTACATGCTTTACATGTGTGTGCACATAGTGAGCTTACAACAAACCGTCTCCATGATCTTTTTGAGTCTGATGAAAATTGGGTTGGAGAAATTTGGTGAAAACACTGTTATGGATGTTGGTTCTTATTTTATACTCCTTGCTTCATGAGCAAAGGAACAAGAAATACTCGTCTGCTCATCTCTTGTTAGGAACTTAACATAGAGTCCCGAGGGAAATTGTTATCAGCCAAAAGAACTCTTAGAACCACCATGAAACAGGAGTTGTCAAGTACGATTTCGAAAAGCAGGGAGAATGCAATTGGAGAAGCTTTGGATTCAAGCTGCGTCACTCATCCTTTTCCTGCTAATGGAAATAGTAGACAAGGAAGGAGTTTAACCTCAAAATTCAAAGGCATTGTGCCTCAGCAGAATGGCCACTGGGGTGCTCAAATTTACGCTAATCACCAGCGTATTTGGCTTGGGACATTCAAGTCAGAAAATGAGGCAGCCATGGCTTATGATAGTGCAGCTATCAGAATCAGGAGGGGAGATTGTCATAGAAACTTTCCTTGGACCAAATTCACTATTGAAGAGCCAAACTTTCAGAAACTTTACACTACAGAAGCTTTGCTTAATATGTTAAAGGACGGTTCTTACAGAACCAAATTTGCGGAGTATTTGAGGGAATGTTCCGAAAGCGCGCAAATGTCAGCCAGTCCCTCTGCAGAAAAGGCGCATAAGAATGGAGGGACATCTATTAAACAACTTTTTCAAAAGGAGCTAACACCTAGCGATGTTGGTAAGTTGAACAGATTGGTCATCCCAAAGAAGTACGCTGTTAAATACTTCCCTCACATATCAGCTAGTGCAATAGAAAATGAGGAAGGTGGCAATGATGATTGTGGCGTGCAGCTTGTATTTTTTGACAAAATGATGAGACTCTGGAAATTTCGATACTGTTATTGGAAAAGCAGCCAGAGCTATGTTTTTACGCGTGGTTGGAATCGATTTGTGAAGGAAAAAGAACTGAAGCCTAATGACACAATAGCTTTCTACTTGTGTGAAGCAGTTAAGGCAAGCGATTCTAAAACTACATTCTGTGTGGTGGATGTTAAAAACCGTGACGACAACGGTGATATCTTGGTTGAGAATGAAACCACATGCAGCACATTGCAGCTCGATTTGAGGCATGAAGAAGTTGAGGAATTGGTGTCGCCTAAGCACGTAGACGATGAAGTCGAAGATGATTCTGAAGTTAAGGGCTTCAAACTGTTTGGAGTGCACATCAAGTGAAAGTAAGTTCTTTTCCTTTCTCCATCCATCGTTCCTTTCCCATTTTTAGTAGTTTGGTAGTGATTAAACCAAATACCTTAAATAAATTTTATTTAAGGTATGCTTGGGAGATTCTTTTTGGAACAATGCTAAGATTACTTACACTCTAGTGTGGTAATTGTGTACCCACTATTAGGAGCAATTCTACAGTAGTTTTCACCCTCGTGAATTTTTTATGTAATAACCAATGTAGTGGTAGAGATTTAACCTCAAACTTCAGGTGAGTGAATAGATATAGATATAAGTTAAAAAGGAGAGGCAAAATATTTAATTTATTTCCATTGGGTTGTCTCTGTCTTGTTACTGTGTATTCAGTTTTAAGATTTGTAATCAGGCTTTTATTGGGCTGAATTTCCTGTATGAACGCCACCGTGAGCGAGATTTAAAGCAATTAGAACAAATGTTCAACCAATTT 3806 40.09 MKQELSSTISKSRENAIGEALDSSCVTHPFPANGNSRQGRSLTSKFKGIVPQQNGHWGAQIYANHQRIWLGTFKSENEAAMAYDSAAIRIRRGDCHRNFPWTKFTIEEPNFQKLYTTEALLNMLKDGSYRTKFAEYLRECSESAQMSASPSAEKAHKNGGTSIKQLFQKELTPSDVGKLNRLVIPKKYAVKYFPHISASAIENEEGGNDDCGVQLVFFDKMMRLWKFRYCYWKSSQSYVFTRGWNRFVKEKELKPNDTIAFYLCEAVKASDSKTTFCVVDVKNRDDNGDILVENETTCSTLQLDLRHEEVEELVSPKHVDDEVEDDSEVKGFKLFGVHIK 340
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 18870304 18887908 - XM_039023089.1 Bhi02g00890 27412
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bhi02g00890 340 Pfam B3 DNA binding domain 167 266 IPR003340 GO:0003677
Bhi02g00890 340 SMART rav1_2 45 106 IPR001471 GO:0003700|GO:0006355
Bhi02g00890 340 PANTHER DNA-BINDING PROTEIN RAV1 1 339 - -
Bhi02g00890 340 Gene3D AP2/ERF domain 44 101 IPR036955 GO:0003700|GO:0006355
Bhi02g00890 340 CDD B3_DNA 166 278 IPR003340 GO:0003677
Bhi02g00890 340 ProSiteProfiles B3 DNA-binding domain profile. 167 284 IPR003340 GO:0003677
Bhi02g00890 340 Gene3D - 162 289 IPR015300 -
Bhi02g00890 340 CDD AP2 44 102 IPR001471 GO:0003700|GO:0006355
Bhi02g00890 340 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 1 339 IPR044800 GO:0003700
Bhi02g00890 340 SUPERFAMILY DNA-binding pseudobarrel domain 166 265 IPR015300 -
Bhi02g00890 340 SMART B3_2 167 282 IPR003340 GO:0003677
Bhi02g00890 340 Pfam AP2 domain 45 92 IPR001471 GO:0003700|GO:0006355
Bhi02g00890 340 SUPERFAMILY DNA-binding domain 44 101 IPR016177 GO:0003677
Bhi02g00890 340 ProSiteProfiles AP2/ERF domain profile. 45 100 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bhi02g00888 Bhi-Chr2:18870304 Bhi02g00890 Bhi-Chr2:18870304 0 dispersed
Bhi02g00890 Bhi-Chr2:18870304 Bhi02g01613 Bhi-Chr2:44157892 1.24E-105 dispersed
Bhi02g00889 Bhi-Chr2:18870304 Bhi02g00890 Bhi-Chr2:18870304 0 tandem
Bhi02g00890 Bhi-Chr2:18870304 Bhi02g00891 Bhi-Chr2:18870304 0 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
422 PF02362 B3 8.50E-24 CL0405 Bhi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bhi02g00890 K09287 - csv:101212246 579.711