Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bhi02g00976 GAAAAAGAGGTGAAAGTTTTACAGTATCATCCAAGAAGGGGATTTATTCTTGCAAAGGGCTTCTATATATTATTAACTTTTCTCATTTGGGTTTCTCCAAAATTGAAAAGACAGAGACATCAGAGACCTTCTTCTTCTCTACTTTATTTTATTTTTTCCTTTCTCTCTTCACACTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCACTAAAAAGGAGAGTGTTGTTTGTTCAATTAATTTGCTGTGAACTCATCAAATCCATGGCGGCCAGCTGCATCGATATTGCACCTGAACAACTCTGCTACATCCCTTGCAATTTTTGCAATATCGTTCTTGCGGTGAGTGTTCCATGCAGTAGTTTGTTTGATATTGTGACAGTCCGATGTGGTCACTGCACAAATCTGTGGTCCGTCAATATGGCTGCTGCATTTCAGTCTCTTTCTTGGCAAGATCTTCAGGTTCCCAATTACAATTTGTATGGAAGTGATTTTCAAGGGGATTTTGGATCAACATCCAAATGTAACAACAATAATAAGATGGAAATTCGAGCACCCACTACAATCCCAACAGAGGAGAGGGTTGTGAATCGACCTCCCGAGAAGAGGCAGAGAGTACCTTCTGCGTATAATCAGTTCATAAAAGAGGAAATCCAAAGGATCAAGGCAAGTAATCCTGAGATTAGCCACAGGGAAGCTTTCAGTACGGCAGCCAAAAACTGGGCACACTTTCCTCGTATTCACTTTGGTCTGATGTTGGAAACCAACAATCAAGTGAAGCTAGACGATGGTTCTGAGCGTTTAATGACAAGGGCTGCAGTATTAAACAAATGAGTAACTGATATGAATGAAGTTGCTGCCTTTTTTTTTCACTTCTTATTAGTTCTGTGACTTAATTTCTACTGCCTTCTTTTTTTTCTTTTATTCCATGAAAACAAAGGCTAATGACTTGAATTTGTTGTTTAAATTCAAGTGACAATTATTATAATATCCATCTTTGTGTTGCACTATTTAATTCCACTATATTATAAAAGGAAAATGTATGACTTGAAAAA 1064 37.31 MAASCIDIAPEQLCYIPCNFCNIVLAVSVPCSSLFDIVTVRCGHCTNLWSVNMAAAFQSLSWQDLQVPNYNLYGSDFQGDFGSTSKCNNNNKMEIRAPTTIPTEERVVNRPPEKRQRVPSAYNQFIKEEIQRIKASNPEISHREAFSTAAKNWAHFPRIHFGLMLETNNQVKLDDGSERLMTRAAVLNK 189
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 21993237 21997069 + XM_039022797.1 Bhi02g00976 27498

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bhi02g00976 189 Pfam YABBY protein 10 163 IPR006780 GO:0007275
Bhi02g00976 189 PANTHER AXIAL REGULATOR YABBY 5 3 180 - -
Bhi02g00976 189 SUPERFAMILY HMG-box 99 156 IPR036910 -
Bhi02g00976 189 PANTHER PROTEIN YABBY 6-RELATED 3 180 IPR006780 GO:0007275
Bhi02g00976 189 Gene3D High mobility group box domain 103 158 IPR036910 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bhi02g00976 K25796 YAB; plant-specific transcription factor YABBY family protein - csv:101215951 365.155
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bhi02g00976 Bhi-Chr2:21993237 Bhi10g00206 Bhi-Chr10:4368030 1.79E-59 dispersed
Bhi07g01746 Bhi-Chr7:47980259 Bhi02g00976 Bhi-Chr2:21993237 2.40E-34 dispersed
Bhi07g01747 Bhi-Chr7:47980259 Bhi02g00976 Bhi-Chr2:21993237 2.40E-34 dispersed
Bhi12g00406 Bhi-Chr12:13603558 Bhi02g00976 Bhi-Chr2:21993237 1.31E-57 transposed
Bhi02g00976 Bhi-Chr2:21993237 Bhi06g01929 Bhi-Chr6:53614028 6.61E-94 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Bhi07g01473 . 5 173 C2C2-YABBY Transcription Factor Family AT1G69180 55.2 6.0e-47 184.9
Bhi07g01472 . 5 171 C2C2-YABBY Transcription Factor Family AT1G69180 55.3 1.0e-46 184.1
Bhi12g00406 . 84 243 C2C2-YABBY Transcription Factor Family AT2G45190 58.9 3.1e-42 169.1
Bhi10g00206 . 1 172 C2C2-YABBY Transcription Factor Family AT1G08465 66.7 3.2e-56 215.7
Bhi10g00203 . 38 185 C2C2-YABBY Transcription Factor Family AT1G08465 65.3 8.8e-46 181.0
Bhi02g00976 . 6 177 C2C2-YABBY Transcription Factor Family AT1G08465 55.6 1.7e-44 176.8
Bhi10g00205 . 1 141 C2C2-YABBY Transcription Factor Family AT1G08465 65.0 1.4e-43 173.7
Bhi12g00406 . 40 233 C2C2-YABBY Transcription Factor Family AT1G08465 52.0 9.1e-43 171.0
Bhi10g00204 . 38 183 C2C2-YABBY Transcription Factor Family AT1G08465 63.3 1.5e-42 170.2
Bhi12g00406 . 51 242 C2C2-YABBY Transcription Factor Family AT4G00180 55.9 3.9e-50 195.7
Bhi07g01745 . 1 174 C2C2-YABBY Transcription Factor Family AT1G23420 50.8 3.0e-39 159.8
Bhi02g00976 . 8 173 C2C2-YABBY Transcription Factor Family AT2G26580 72.3 4.1e-63 238.4
Bhi06g01929 . 8 171 C2C2-YABBY Transcription Factor Family AT2G26580 72.0 3.0e-61 232.3
Bhi10g00206 . 1 172 C2C2-YABBY Transcription Factor Family AT2G26580 61.0 4.4e-49 191.8
Bhi12g00406 . 42 205 C2C2-YABBY Transcription Factor Family AT2G26580 54.8 2.5e-44 176.0
Bhi10g00203 . 38 185 C2C2-YABBY Transcription Factor Family AT2G26580 61.5 8.4e-40 161.0
Bhi10g00204 . 38 183 C2C2-YABBY Transcription Factor Family AT2G26580 58.2 2.3e-37 152.9
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001272 2 2 3 3 3 2 4 2 2 2 2 2 4 2 2 4 2 2 4 2 2 2 2 2 2 2 2 7 3 1 76
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
429 PF04690 YABBY 1.30E-69 CL0114 Bhi TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bhi02g00976 Bhi_Chr02 FPKM 2.116759 2.89101 0.399604 0.382977 1.006919 0.882282 0.890553 0.659369 0.499445 0.879284