Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bhi02g01183 AAGAACGTAAGCCTTTCTTGCTCGTCTTCTTGTTCTGTCCATTCGTACTGTATACAAATAATCATTATTGCATAGCCCTAGGCGTCGTCTCTTTTAGTTTTCCTTCTCGTCGGCTATCCTCGAGCATCAAACTGCTTATGATTTCAGGTACTAGAGGTCAGCTTTGGCGTAGAAGTTTTTCTTTCAGTTCCGAATTTGCATATTTTTGTGCATGATCTTTACCGCTGCTTTTGGACTGTGATTCATGCCTGAAATTCAGAAGATTGAGTTGATTTTCATGAGTTTGAATTATTGGTAGCGAATATGCGGATTGAGGAAGTTTTTGAAAAAGATTTGAAAATTGCTGGTTAGAGGTTTGATATTTGAAATTCAAATTGAATGGGTGAAGTTGGGAATCGAGATATGGATAACTTACCCCTGTTAAATGCACAAACTGATAGTGCGGAACCGGGTAATGTTGTTTCATCTGATGTTCCTTCTAAGAAACTAGCTAGGCAGCTGGATTTTACGGGGTCTGTTGGTGCAGTCTTGCCGGAGCATCCTCATTTTCAGTCTCAGCCTCGGTGTCAACAATCAGAGTCGCCGGCCGTCATGGTGGTGCAGAGTCAGTCGCAGCCACAGTCCCCACAACATTTGATGGTTTTGCCCATTGTAACAAAAGCGCCTCATCCTGCGAGAAAGCCAGATTCCCCGAAGTCAAGATCAAGATCTAATGTTGAAACAAAAGATGCTACTCCAAAAAAACAAAAACAGTGTAACTGCAAACACTCACGCTGCTTAAAGCTGTACTGCGAGTGTTTTGCATCCGGAATATACTGTGATGGTTGCAATTGCACAAATTGCCATAACAATGTTGAGAATGAAGCTTCTAGGAGAGAAGCAGTCGAAACTACTTTAGAACGTAATCCAAATGCATTCCGACCAAAGATTGCTAGCAGCCCACATGGAACACGAGAGAGCAGGGATGAAATTGGAGAGGTAGTAATGCTGGGAAAGCACAACAAAGGATGCCATTGCAAGAAATCAGGTTGCTTAAAGAAGTATTGTGAGTGCTTTCAGGCCAATATTCTATGCTCTGAAAACTGTAAGTGCATGGACTGTAAGAATTTTGAAGGCAGTGAAGAGAGACAAGCTCTTTTCCATGGTGACCATGTCAACAACATGGCTTCTATTCAACAGGCAGCCAATGCTGCAATAACTGGAGCTATTGGATCCTCTGGTTATGCTTGCCTTCCCACTTCAAAGAAAAGAAAAGGCCCAGAGCTATGCTTTGGCCCTGTAGGGAAGGATTCCCCTCTCAACAGTATGCCACAATTTCATCAGGCAAATAATATAATGGCTTCAGGCACGTTTACATCATCTCCCTTCCCAGTTGCTCATGTTGGTAGCCCTGCGGCACCGGGACCTTCAAAGTTCTCATTCAGGTCCTTATTAGCTGACCTCATCCAGCCGCATGACTTGAAGGAGCTTTGCTCAGTTTTAGTGGTGTTGTCAAGTGAAGTTGCAAAGAACCTAGCAGAGCATAGAAATACTGTGAAACAGATAAATGACCGGCCACAGATTTTTCGTGCTTCATCAACTGGAGATATGTCACAGCGTCAGAAGGCCGAAGTGAAAGCTGCAGATGGTGAGTGTGGTAGTTCAAACCAAAGTGAAAGGAGTGTACATGACAATTCTAATTCAGATAGTTCGAATACAACACGGGCAAGGCCGATGTCCCCTGGAACTTTAGCTTTAATGTGTGATGAAGGAGATACAATGTTCATGGGAGCTGGTCTAGCTGATGGGTTGGCAGGCCATGATTGCAACACATCATCACATGTGCCTGATAAGTCTTTGTCAGAAGTCTACATCGAGCAGGAACGGATTGTGTTGACAAAGTTTCGAGATTGTCTTAATAAACTCATCACTCTGGGAGAGATAAAAGAAACAAAATTCACTTCTAGAAGCGAATTGGGGAACGAACATCACAGCAACAATTTCACCTCAAATAGTGGGTGCCAACAGAGATCTATTAGCAATGGGGTCGTAAAAAATGTCGCTCTCTCAGCACCTAGAATACCACCAGTCGGCACTGCAGCTCATCATCCGAATAACGATCTCGTACCCAATATTCTACCCCTTTCTAAAAATAGGAAGAATAAACCACAAGTTGACAGAGAAGTGTAGGAAAAGCCGAAGAAAGCAACTGGCGTGTTGCTCAATCTCATTGATCATTCAGATTTGCTTCCTGAGACTGGTCTATTCAAGTTAGTTGCCCCATTTTGACGTATATTATTGGTTTTTATATCATCATTAGAATTCTAGGAGAATTTTGTGTTCCAAATTCCATTCGTAGATAGAGATCTTGTAATTGCTAAATCATTGTACGAGATAGATAACAAAGAGCAATAATTCATCCCTTTTTTTCTTTTTAGGAAATAATTCATCCCATTTGATGACCAATGAAATAAAAGATTAGCATCATTATGCATTTTTGTTCA 2483 41.84 MGEVGNRDMDNLPLLNAQTDSAEPGNVVSSDVPSKKLARQLDFTGSVGAVLPEHPHFQSQPRCQQSESPAVMVVQSQSQPQSPQHLMVLPIVTKAPHPARKPDSPKSRSRSNVETKDATPKKQKQCNCKHSRCLKLYCECFASGIYCDGCNCTNCHNNVENEASRREAVETTLERNPNAFRPKIASSPHGTRESRDEIGEVVMLGKHNKGCHCKKSGCLKKYCECFQANILCSENCKCMDCKNFEGSEERQALFHGDHVNNMASIQQAANAAITGAIGSSGYACLPTSKKRKGPELCFGPVGKDSPLNSMPQFHQANNIMASGTFTSSPFPVAHVGSPAAPGPSKFSFRSLLADLIQPHDLKELCSVLVVLSSEVAKNLAEHRNTVKQINDRPQIFRASSTGDMSQRQKAEVKAADGECGSSNQSERSVHDNSNSDSSNTTRARPMSPGTLALMCDEGDTMFMGAGLADGLAGHDCNTSSHVPDKSLSEVYIEQERIVLTKFRDCLNKLITLGEIKETKFTSRSELGNEHHSNNFTSNSGCQQRSISNGVVKNVALSAPRIPPVGTAAHHPNNDLVPNILPLSKNRKNKPQVDREV 596
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 27810723 27816717 + XM_039024674.1 Bhi02g01183 27705

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bhi02g01183 596 PANTHER PROTEIN TESMIN/TSO1-LIKE CXC 5 ISOFORM X1 29 91 - -
Bhi02g01183 596 PANTHER PROTEIN TESMIN/TSO1-LIKE CXC 5 ISOFORM X1 59 537 - -
Bhi02g01183 596 MobiDBLite consensus disorder prediction 12 28 - -
Bhi02g01183 596 MobiDBLite consensus disorder prediction 418 446 - -
Bhi02g01183 596 SMART CXC_2 206 247 IPR033467 -
Bhi02g01183 596 SMART CXC_2 121 161 IPR033467 -
Bhi02g01183 596 PANTHER TESMIN/TSO1-RELATED 59 537 IPR028307 -
Bhi02g01183 596 PANTHER TESMIN/TSO1-RELATED 29 91 IPR028307 -
Bhi02g01183 596 MobiDBLite consensus disorder prediction 390 451 - -
Bhi02g01183 596 MobiDBLite consensus disorder prediction 1 33 - -
Bhi02g01183 596 MobiDBLite consensus disorder prediction 58 83 - -
Bhi02g01183 596 MobiDBLite consensus disorder prediction 95 121 - -
Bhi02g01183 596 MobiDBLite consensus disorder prediction 523 543 - -
Bhi02g01183 596 MobiDBLite consensus disorder prediction 562 596 - -
Bhi02g01183 596 MobiDBLite consensus disorder prediction 50 83 - -
Bhi02g01183 596 Pfam Tesmin/TSO1-like CXC domain, cysteine-rich domain 123 158 IPR005172 -
Bhi02g01183 596 Pfam Tesmin/TSO1-like CXC domain, cysteine-rich domain 209 243 IPR005172 -
Bhi02g01183 596 ProSiteProfiles CRC domain profile. 122 246 IPR005172 -
Bhi02g01183 596 MobiDBLite consensus disorder prediction 390 407 - -
Bhi02g01183 596 MobiDBLite consensus disorder prediction 99 121 - -
Bhi02g01183 596 MobiDBLite consensus disorder prediction 527 543 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bhi02g01183 - - - csv:101222405 991.49
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bhi01g00774 Bhi-Chr1:14648782 Bhi02g01183 Bhi-Chr2:27810723 3.96E-31 dispersed
Bhi02g01183 Bhi-Chr2:27810723 Bhi06g02018 Bhi-Chr6:55344757 0 dispersed
Bhi02g01183 Bhi-Chr2:27810723 Bhi12g01691 Bhi-Chr12:54742349 6.28E-33 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi14g467 . . . . . . . . . . . . . . . . . Bhi02g01183 . . . . . . . . . . . . . Cone10ag0689 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Bhi06g02017 . 31 514 CPP Transcription Factor Family AT2G20110 58.4 1.8e-147 520.4
Bhi06g02018 . 31 520 CPP Transcription Factor Family AT2G20110 57.7 1.3e-145 514.2
Bhi02g01183 . 34 550 CPP Transcription Factor Family AT2G20110 50.7 7.3e-125 445.3
Bhi06g02018 . 29 527 CPP Transcription Factor Family AT4G29000 57.5 5.4e-153 538.9
Bhi06g02017 . 29 521 CPP Transcription Factor Family AT4G29000 57.1 1.5e-150 530.8
Bhi02g01183 . 28 526 CPP Transcription Factor Family AT4G29000 53.6 2.1e-141 500.4
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002094 2 3 2 1 2 2 4 2 2 2 0 2 3 2 2 3 2 4 3 2 2 2 2 2 2 2 2 3 2 1 65
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
445 PF03638 TCR 3.20E-12 No_clan Bhi TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bhi02g01183 Bhi_Chr02 FPKM 11.631824 12.263766 10.315319 10.092373 9.934062 11.734967 11.509108 9.964419 10.768101 10.307036