Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bhi02g01384 GCAGTTCTCAAATTTCCCCAGCGGTTTTTTTTCTTTCAAGTTCTTTTCACGTTGTCCTTCTCACTGGCTCACTTCTTTTTATCAGGTTGAAGATGATGGACCTCGTTTTGCTGAAACAGATGATGGGTGGTGGATAGATTGAGTCTACTCAGAGAAATCTTCAACCAAATTGAAATTTTTTGGTGACCCAAATGATTGAATTGAGATGGGGTTGACTAATTTTGACTGATTGATGGATCAGACGGCTCCTAAGGTTGCAACAAATCAGGAAAGTTCGGAATCGTGGTGCAACTGAAATGAACTCAATTAATCACGTGGAAAAGCTATTTGATTTTGTAGTCGAAACGTGGGTGATTCTAAATTGCTGAGTTTCTAGCTGTTGGTCTGTTTGTAGTCAACACTCTTGAATACACCATGGGTGTTTCTGGAAAATGGTTCAAGGCGTTAGTTGGTTCAAAGAAGTCAGAAAAATCTCAGTCATCAGAACATGATCAAAATGCGAGGACAGTAACCAACAAGTTTTGGCATCGGAGAAAGCATTCTGTTGATATTGATGCTGATAAACTTCAGCATGAGTTCAATTCAAATTTTACCCCATTTGTTGAAGAGTCCAATGCTCTTTCAGATCCAGAAGCTGCTTCTATTCCTTCTGATTCACTTCAAACTTATGATGCATTACATAGTCAACAGAATGATATAGAAGAACAGGCTGCTATACGCATCCAAACAATGTTTCGAGGATTTCTGGCTAGAAGAGCTCTCCGAGCTCTCAAGGGATTGGTTAGACTTCAAGCTCTTGTCAGGGGTCATGCTGTCAGAAAACAAGCTGCAATAACTCTACGCTGTATGCAAGCTTTAGTGAGAGTCCAGGCTCGTGTTCGAGCAAGGCGTGTACGTATTGCATTGGAAAGTGAAACTGCACAACAAAAACTTCAACAAGAACTTGAAAACCAGGCTCGAGTTCGAGAAATTGAAGAAGGTTGGTGCGACAGTGTTGGATCTGTTGAAGACATTCAAGCAAAATTATTAAAAAGGCAGGAGGCTGCAGCTAAGCGTGAGAGAGCCATGGCATATGCTCTGGCTCATCAGTGGCAAGCAGGATCAAGACAGCAGGCCGCCCTCTCTCAGTTTGAACCAGATAAAAGCAGCTGGGGTTGGAACTGGTTGGAAAGGTGGATGGCTGTTCGTCCGTGGGAAAACCGCTTTCTTGACATCAATCTGAGAGATGGAGTGATGATTCGTGAGAATGGATCATCTGAGGGAAAAAGTAACACTAGATCTCATTTAAAAACTACTGGCAAGAAGACAAACTTAGTAATTGATCAATCAAACCTCTCGAGCCAGAAAACTGCTGGCTCACATTCTGATGGATGTGGTTCATCATCTCCCACTAAGTCAGCTGGCACTGTAGAAATATCCAGTGCACAGGTTCAAAAGTTCAAGCATAAACTTGCACCTGAGAGGCCATTTGAAGAAGTCAAAGCAAAAGTGGATACTGGTTTAAGATCGCATAGCAATCCAAAAGAGAGATCCACACCATTGGTCAAAAATGCAAAGAAGCGATTATCCTTGCCTAATAATGATCCTGGTAGTCAAAATCAAACGGTGAGAAATTCTGCTGGCAAAGCGACCATGGCCAAGTCAATCAACGATAAACCCAAGTCAATTTCCAGATCAGCTGACTCAAAATCTGCAAAACCTAGATCCCAGAATTGATATGCAAACTATTCCAAATGGTGAGGAAAACACTTCAAGTCGTATAGTGTCCGGGAATGTGCTGCAGGATCGTGTGTAAATATGGCAAGGCCATGTTGTGATGGGGTCGGTCACTAGAAAGTTTGTCTTCCCTTTGAATTTCTGAGTTTATTTCATAGTGAGTTATTGCAATGGTTGGCCAATGTCTCAGGGAATAAGGTTGGTGAGTTTCATTGGGTGAGTCTGTAATTATTCATCTTTATTTATTGTCTTCAACCATGTGGCTCTTTGGCACTTGTTCATTTTTTTGCTCCCTTGTATTTTTGTTGTTCAATGTTTGATTTCAAAGAATCTGGTATAGATTGGTTTTGTAATCATGAATCTCTTATGATCTTATCTACCCTTTTTAGGAAATATCCCAACCATGGAGATTTTAATTTCTACCTC 2142 41.04 MGVSGKWFKALVGSKKSEKSQSSEHDQNARTVTNKFWHRRKHSVDIDADKLQHEFNSNFTPFVEESNALSDPEAASIPSDSLQTYDALHSQQNDIEEQAAIRIQTMFRGFLARRALRALKGLVRLQALVRGHAVRKQAAITLRCMQALVRVQARVRARRVRIALESETAQQKLQQELENQARVREIEEGWCDSVGSVEDIQAKLLKRQEAAAKRERAMAYALAHQWQAGSRQQAALSQFEPDKSSWGWNWLERWMAVRPWENRFLDINLRDGVMIRENGSSEGKSNTRSHLKTTGKKTNLVIDQSNLSSQKTAGSHSDGCGSSSPTKSAGTVEISSAQVQKFKHKLAPERPFEEVKAKVDTGLRSHSNPKERSTPLVKNAKKRLSLPNNDPGSQNQTVRNSAGKATMAKSINDKPKSISRSADSKSAKPRSQN 433
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 36090725 36099507 + XM_039023720.1 Bhi02g01384 27906

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bhi02g01384 433 MobiDBLite consensus disorder prediction 353 433 - -
Bhi02g01384 433 ProSiteProfiles IQ motif profile. 96 124 IPR000048 GO:0005515
Bhi02g01384 433 MobiDBLite consensus disorder prediction 386 415 - -
Bhi02g01384 433 PANTHER IQ-DOMAIN 5-RELATED 2 401 - -
Bhi02g01384 433 MobiDBLite consensus disorder prediction 277 332 - -
Bhi02g01384 433 Pfam IQ calmodulin-binding motif 98 117 IPR000048 GO:0005515
Bhi02g01384 433 ProSiteProfiles IQ motif profile. 120 147 IPR000048 GO:0005515
Bhi02g01384 433 MobiDBLite consensus disorder prediction 14 34 - -
Bhi02g01384 433 SMART iq_5 95 117 IPR000048 GO:0005515
Bhi02g01384 433 SMART iq_5 118 139 IPR000048 GO:0005515
Bhi02g01384 433 PANTHER IQ-DOMAIN 5-RELATED 2 401 - -
Bhi02g01384 433 MobiDBLite consensus disorder prediction 279 332 - -
Bhi02g01384 433 Gene3D - 96 138 - -
Bhi02g01384 433 MobiDBLite consensus disorder prediction 353 367 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bhi02g01384 - - - csv:101204117 766.918
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bhi02g01384 Bhi-Chr2:36090725 Bhi09g03139 Bhi-Chr9:80518414 3.24E-60 dispersed
Bhi02g01383 Bhi-Chr2:36090667 Bhi02g01384 Bhi-Chr2:36090725 0 tandem
Bhi02g01384 Bhi-Chr2:36090725 Bhi02g01385 Bhi-Chr2:36091039 0 tandem
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Bhi06g00669 . 1 479 IQD Protein Family AT3G52290 54.2 5.3e-102 369.0
Bhi06g00668 . 1 479 IQD Protein Family AT3G52290 54.2 5.3e-102 369.0
Bhi02g01384 . 1 408 IQD Protein Family AT3G22190 57.5 1.5e-96 350.9
Bhi02g01383 . 1 408 IQD Protein Family AT3G22190 57.5 1.5e-96 350.9
Bhi02g01385 . 1 408 IQD Protein Family AT3G22190 57.5 1.5e-96 350.9
Bhi09g03139 . 1 438 IQD Protein Family AT2G26180 61.6 9.3e-120 427.9
Bhi03g00330 . 1 274 IQD Protein Family AT2G33990 53.6 1.2e-61 234.2
Bhi03g00327 . 1 274 IQD Protein Family AT2G33990 53.6 1.2e-61 234.2
Bhi03g00326 . 1 274 IQD Protein Family AT2G33990 53.6 1.2e-61 234.2
Bhi03g00329 . 1 274 IQD Protein Family AT2G33990 53.6 1.2e-61 234.2
Bhi03g00328 . 1 274 IQD Protein Family AT2G33990 53.6 1.2e-61 234.2
Bhi03g00324 . 4 223 IQD Protein Family AT2G33990 57.6 5.8e-59 225.3
Bhi03g00323 . 4 223 IQD Protein Family AT2G33990 57.6 5.8e-59 225.3
Bhi03g00325 . 4 223 IQD Protein Family AT2G33990 57.6 5.8e-59 225.3
Bhi01g03276 . 83 266 IQD Protein Family AT2G33990 53.5 1.6e-48 190.7
Bhi01g03276 . 86 259 IQD Protein Family AT3G15050 62.7 8.5e-55 211.5
Bhi03g00330 . 56 232 IQD Protein Family AT3G15050 58.2 9.4e-54 208.0
Bhi03g00327 . 56 232 IQD Protein Family AT3G15050 58.2 9.4e-54 208.0
Bhi03g00326 . 56 232 IQD Protein Family AT3G15050 58.2 9.4e-54 208.0
Bhi03g00329 . 56 232 IQD Protein Family AT3G15050 58.2 9.4e-54 208.0
Bhi03g00328 . 56 232 IQD Protein Family AT3G15050 58.2 9.4e-54 208.0
Bhi03g00324 . 5 181 IQD Protein Family AT3G15050 58.2 9.4e-54 208.0
Bhi03g00323 . 5 181 IQD Protein Family AT3G15050 58.2 9.4e-54 208.0
Bhi03g00325 . 5 181 IQD Protein Family AT3G15050 58.2 9.4e-54 208.0
Bhi12g01121 . 124 476 IQD Protein Family AT5G13460 52.1 9.4e-78 288.5
Bhi12g02233 . 1 508 IQD Protein Family AT4G00820 51.3 2.8e-113 406.8
Bhi12g02232 . 1 509 IQD Protein Family AT4G00820 51.2 3.7e-113 406.4
Bhi01g00618 . 1 466 IQD Protein Family AT4G00820 50.5 1.1e-104 378.3
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004215 1 3 1 2 1 1 2 1 1 2 1 1 2 1 1 2 1 4 1 1 1 1 1 1 1 1 1 3 1 1 42
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bhi02g01384 Bhi_Chr02 FPKM 0.0 0.0 0.0 0.0 0.0 0.0 0.0 1.779544 1.88954 1.35471