Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bhi02g01604 CCTCAAAATTTGACCAATCCGTACGAAATTTCCGAGGGAACCTCCACACGTACAATGCCAAATTTCAGTACTCAGACAGCCCCGCTCTTTTCATCTTCTTCTTTTTTCATCTCCCAATTCAAAAAACAGAGGAAAAAACTTTCGATTTCTACTCTCAAATCTCCTTTGCCATTCTTTGAGTCCTCACGAATTCTCGATTTTTTTGCCCTGAATTGAAACCTTAATTTTGGATTAGGGTTTCCATTGCGCAATCGTCACAATGAGGCCTGTCAAACGCGAACCTACCGCCAGCAACCGCAGTAATCGGAGTAGAGGCGGCGGTGGCGATGGCGGCACTGTCGATGCTGCGAGTTTAAAGGATATTAAGCGGGAGAGGGTTGCTCGGGAGCGTGAGAACTCCGGCGAAGACAACACGACTGAAGAAGAAGTGGGTCAGCAAGACTTGACGAAGCGGCGGGTCCTTCGCTCTCGGTATCTTGCGGTTATTCATGAGATCAGTGAAAGAAGAGAGGATTTGTCGAAGGATCCGGATAAGTTTAATGTTATCATCAATGAGGTGGAAAAGTTGCACGAGCAAGTTCAGAAGCCAAGGGAACAAGTTGCTGATGCAGAAGTTTTGCAAGATATTGCAAACTCCCTTGTGACCTCTATTAGGTCCCAGTCAAATGAAGGTGTTACTCCATCAGATTTTGTTAGTTGTCTGCTCAGAGAATTTGCCGACATTAACAGTAGTATGAAATCTGAAGAACATGACCTGGTTTCTGTCAGTTGGAAAGATATTGGACTCAGTGTTTCATCTATTTTCATGAATGGCCATGGATGCCGCACCATGCTTGGACCTATGAGCAATCAGTTGAAGCAGCGAAAGACTAATAATGTTTCCAGGAAACGCTCCAGGCCTACTGAAAGTTCTAGACCTGCAGAGGTTGAAGATACTGGGTCCGAAGCAAAAACAGATACAGATAAGAACATGGGCATCATGTTTGGAATTTTGAGGAGGAATAAAACCGTTAAACTTGAACACTTGATATTGAATAGGAAGTCTTTTGCACAGACTGTAGAGAATTTATTTGCTCTATCCTTTCTGGTTAAGGATGGTCGGGCTGAGATAACTATTGATAAAAATGGTTCTCACTTTGTGTCACCAAAGAATGCCCCTGCCCATAGTGCCATTATGTCACATGAAGTTAATTACAGTCATTTTGTATTCAGATTCGATTACAAGGATTGGAAGCCAATGGTGGATATGGTACCAGTTGGAGAGGAGCTGATGCCCCACAGGAATTTTCTGAACTCAGTGCAGGTGTCCGAAGCAGAAGAAACAGCGGACGATTCTGAAGCGGCAGGCTTGCCTACAACACCAATCCGAAAGCTGTCAAGAAATCGAGGTTTAGTTATGCAATCTGTTGTTGAAGATTCTCCTGATAATGGCTCTCAATCAGGAGCAACTGCAATTTTGAGGTGCAAGAGAAAGCTTAGTCAAGGTTAGGTTAATTAGAGCTTTGAAAGCTACCTAATGTGAATGCCTCTTTTTGTTCTATGGTTGTATATTTAATGGCTGCCTTGAAAATAGGATAGTTAATTAGGTTCTAAGAGAAAATGATTGCCAAATTTAACTTTTTCTAACAAAGTTTCGATTAAGTTGTAATGATTATTGCGAAGTACCATGCCTTTTGGGTTAGCTTAGATCAAGCTCCAATCATTTTGTAAA 1711 42.26 MRPVKREPTASNRSNRSRGGGGDGGTVDAASLKDIKRERVARERENSGEDNTTEEEVGQQDLTKRRVLRSRYLAVIHEISERREDLSKDPDKFNVIINEVEKLHEQVQKPREQVADAEVLQDIANSLVTSIRSQSNEGVTPSDFVSCLLREFADINSSMKSEEHDLVSVSWKDIGLSVSSIFMNGHGCRTMLGPMSNQLKQRKTNNVSRKRSRPTESSRPAEVEDTGSEAKTDTDKNMGIMFGILRRNKTVKLEHLILNRKSFAQTVENLFALSFLVKDGRAEITIDKNGSHFVSPKNAPAHSAIMSHEVNYSHFVFRFDYKDWKPMVDMVPVGEELMPHRNFLNSVQVSEAEETADDSEAAGLPTTPIRKLSRNRGLVMQSVVEDSPDNGSQSGATAILRCKRKLSQG 409
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 44063237 44066102 + XM_039023890.1 Bhi02g01604 28126

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bhi02g01604 409 MobiDBLite consensus disorder prediction 30 62 - -
Bhi02g01604 409 MobiDBLite consensus disorder prediction 1 62 - -
Bhi02g01604 409 Pfam Nse4 C-terminal 251 338 IPR014854 -
Bhi02g01604 409 MobiDBLite consensus disorder prediction 192 234 - -
Bhi02g01604 409 MobiDBLite consensus disorder prediction 209 232 - -
Bhi02g01604 409 PANTHER UNCHARACTERIZED 36 406 IPR027786 GO:0005634|GO:0006281|GO:0030915
Bhi02g01604 409 PANTHER NON-STRUCTURAL MAINTENANCE OF CHROMOSOMES ELEMENT 4 36 406 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bhi02g01604 K22825 NSMCE4, NSE4; non-structural maintenance of chromosomes element 4 - csv:101220149 704.516
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bhi02g01603 Bhi-Chr2:44063236 Bhi02g01604 Bhi-Chr2:44063237 0 tandem
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Bhi02g01603 . 60 407 Non-SMC Element family AT1G51130 55.4 3.7e-97 352.8
Bhi02g01604 . 60 407 Non-SMC Element family AT1G51130 55.4 3.7e-97 352.8
Bhi02g01603 . 60 387 Non-SMC Element family AT3G20760 52.7 1.3e-88 324.3
Bhi02g01604 . 60 387 Non-SMC Element family AT3G20760 52.7 1.3e-88 324.3
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008652 0 2 0 0 1 1 3 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 1 1 2 35
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bhi02g01604 Bhi_Chr02 FPKM 0.0 0.0 2.015173 1.67786 12.533569 9.654674 11.62596 0.0 0.0 0.0