Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bhi02g01613 AAGAATTCAACCATCGTAGCTAAAAAAAATATGCAAATCATGGTAAGAAATGTGGATGAAATAGACTTAAATTTAAAAAAAAAAACAAAAAAACCTAATGGTTACCAAACGAGGCTTAAAAGTACACAAACTAAAATGAACCAAGTTCAATTGGCATAGAAAATGTAATAATCATGAGATTTAGTTCGAATCTCCTTAAAAAAAAAAAAAAAAAAAAATCCCACCCATACAAGCATGATAAAAATGTCAAGTATGATTATCTACTCTAAAATTGAATATCAATTCCCTTATCCCATATTTGTTGAAGAAGCCTACCCCAAGATTATAATTTAACCATAAATAATGAATGGGAGAGTTCAGTTTTGCATTTTGCAAACAAGAAAAGTACACACAGTTGGATCATTTTCTTGTAGTTATAGCCAATCAAGCAGCACACAACTAACTCAATTTAGTTTTGAGTAATAGATTATTACATACTAAATAAAGAGAAAATTTGGGTAGAAAACTAAGGATTTTAATAATTAATGTGTGTTAATCTATCTCAAGTTGATTTGCTTTTATAAAACTAGTGTTGTGTCAAATGGTTTTTAGTTATGAAAGTAACCAAAAACAGTTTAGTTTCTGAAAACTGTCCACCTCCCAAAGTCCCAAAACACCCACCAATTTGAACCTTCTTTCAACAGAAAAATGAAAAGAAAAATTCTCTCACCATTGCCAACTTGGTTTTTCCTCTCCCCTGCAACTGTAACTTAAACTTCAATCATGTCTTCTTATTCTTCTTCTTCCTCTACTTTAATCCCACTTCCCCTCCTATCCATTTCCCCTTCACATCTACCATGGAAGACGAAGCTTCCTCTACCTTCCTTTCCCATATCAAGACTCCTATCCTAACAGATGAAGTTTCAGATTCTAATTTCACATATGATGCCATACCTGATGCCAAGCGGCCGAGACTGGATAACCATCTTAATGATGTTGTTGCCGTCGGGAAATTCAAAGGCGTTGTGCCGCAACAGAATGGCCGTTGGGGAGCGCAGATCTACGCGAATCACCAGAGGATCTGGCTTGGTACCTTCAAAACAGAGAAAGACGCTGCTATGGCTTATGATAGCGCCGCTATCAAGCTTCGCACCAGAGATTCTCACCGGAATTTCCCCTGGACTCGCCGAACAATCGAGGAACCTAATTTTCAAATCAAATTCTCCACAGATGCTGTTCTCAGTATGATCAAAGACGGATCATATTACTCGAAATTTTCCGCTTATTTACGAACGCGATCTCAAATTCACGACTCGAATTTACAGAATCCTCAAAATTTTGACAATGGCGATGGCGATAGTCTTTTCTCTTGTAGTCATCTGTTCCAGAAGGAATTAACACCGAGCGATGTCGGCAAGTTGAATCGACTCGTAATCCCTAAAAAATACGCAGTGAAACATTTTCCATACATCAGCGAAGGCGCAGAGGAAAACGGCGACGACATCGAAATCGTGTTCTACGATACGTCGATGAAGACGTGGAAGTTCCGATACTGTTATTGGAGGAGCAGCCAGAGTTTCGTATTTACCAGAGGCTGGAATCGCTTCGTGAAGGAGAAGAAACTGAAGGCGAACGACATTATCACGTTTTACACATACGAGAGCTGCGGAAGAGACGAAAATGGCGGAACATTGAACTTCATAGACGTAATCTATAAAACATTGGAGGATGATCATGATCAGAGCGAAAATAGTTGCTTAGCGGCGGAGAAAGTGAGTGTTAAGAATGAGAAATTATTGCAGAGTGAATTAAGGCAAAACCAGGATTGTGAGAAGAAGATGAACAAGGAGGAGATTTTAAGCATCGAATTGAACCCTAATGATAAAAATGTGGGGGCAAAGCGAATTAGGCTATTTGGAGTGCATATTGATTGAATGAAATTAGAGTTTTAAAG 1933 37.92 MEDEASSTFLSHIKTPILTDEVSDSNFTYDAIPDAKRPRLDNHLNDVVAVGKFKGVVPQQNGRWGAQIYANHQRIWLGTFKTEKDAAMAYDSAAIKLRTRDSHRNFPWTRRTIEEPNFQIKFSTDAVLSMIKDGSYYSKFSAYLRTRSQIHDSNLQNPQNFDNGDGDSLFSCSHLFQKELTPSDVGKLNRLVIPKKYAVKHFPYISEGAEENGDDIEIVFYDTSMKTWKFRYCYWRSSQSFVFTRGWNRFVKEKKLKANDIITFYTYESCGRDENGGTLNFIDVIYKTLEDDHDQSENSCLAAEKVSVKNEKLLQSELRQNQDCEKKMNKEEILSIELNPNDKNVGAKRIRLFGVHID 358
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 44157892 44159824 - XM_039022727.1 Bhi02g01613 28135
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bhi02g01613 358 CDD AP2 52 109 IPR001471 GO:0003700|GO:0006355
Bhi02g01613 358 Gene3D - 165 281 IPR015300 -
Bhi02g01613 358 Pfam B3 DNA binding domain 176 267 IPR003340 GO:0003677
Bhi02g01613 358 SUPERFAMILY DNA-binding pseudobarrel domain 174 269 IPR015300 -
Bhi02g01613 358 CDD B3_DNA 174 281 IPR003340 GO:0003677
Bhi02g01613 358 SUPERFAMILY DNA-binding domain 52 108 IPR016177 GO:0003677
Bhi02g01613 358 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 18 357 IPR044800 GO:0003700
Bhi02g01613 358 PANTHER AP2/ERF AND B3 DOMAIN TRANSCRIPTION FACTOR 18 357 - -
Bhi02g01613 358 Coils Coil 314 334 - -
Bhi02g01613 358 Pfam AP2 domain 52 99 IPR001471 GO:0003700|GO:0006355
Bhi02g01613 358 ProSiteProfiles B3 DNA-binding domain profile. 176 287 IPR003340 GO:0003677
Bhi02g01613 358 SMART rav1_2 52 113 IPR001471 GO:0003700|GO:0006355
Bhi02g01613 358 SMART B3_2 176 285 IPR003340 GO:0003677
Bhi02g01613 358 ProSiteProfiles AP2/ERF domain profile. 52 107 IPR001471 GO:0003700|GO:0006355
Bhi02g01613 358 Gene3D AP2/ERF domain 52 108 IPR036955 GO:0003700|GO:0006355
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bhi02g00890 Bhi-Chr2:18870304 Bhi02g01613 Bhi-Chr2:44157892 1.24E-105 dispersed
Bhi02g00891 Bhi-Chr2:18870304 Bhi02g01613 Bhi-Chr2:44157892 1.24E-105 dispersed
Bhi02g01613 Bhi-Chr2:44157892 Bhi07g01368 Bhi-Chr7:41285107 4.59E-55 dispersed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
471 PF02362 B3 1.10E-26 CL0405 Bhi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bhi02g01613 K09287 - csv:101219913 636.336