Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bhi02g01667 ATGTTCGGGATGGCGGTGGAGGCAGTGACGACCGTGGTGGCGATGGCGGTGGCCGGGTGGTTGCTATTTGGAGCTGAGGGTAGGCAGCCAGTGTTGCATAGAGTTGGAGGAGGAAAATATACTTGGACAACTAATATTAACTTCACTGATTGGTCAATTCATGAGCACTTTTATGTTGGTGATTGGCTTTATTTTGGGTTCGATAAACATATCTACAACGTGTTGGAAGTGAACAAAACGAGCTACGAGAGTTGCAACGATAAGGGTTTCATTTTCAACCTAACGAGGGGAGGAAGAGATGTGTTCAATCTAACAGAAGCAAAAACATACTACTTTCTAAGTGGAAGAGGGTTTTGCTTTCAAGGAATGAAAGTTGCTGTCTTTGTTGAAGAATCTCCTCCCATAGTTTCACCACCCAATTTACCCAATTTACCCAATCATTCTCCATCTTTACAACCATTAATATTCCCCTTTCTCCCTCTTGCTATTCATCAATATTTCTATGACTAA 510 42.16 MFGMAVEAVTTVVAMAVAGWLLFGAEGRQPVLHRVGGGKYTWTTNINFTDWSIHEHFYVGDWLYFGFDKHIYNVLEVNKTSYESCNDKGFIFNLTRGGRDVFNLTEAKTYYFLSGRGFCFQGMKVAVFVEESPPIVSPPNLPNLPNHSPSLQPLIFPFLPLAIHQYFYD 169
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 45858557 45859693 + XM_039024535.1 Bhi02g01667 28189

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bhi02g01667 169 PANTHER BLUE COPPER PROTEIN 11 137 IPR039391 GO:0009055
Bhi02g01667 169 PANTHER EARLY NODULIN-LIKE PROTEIN 20 11 137 - -
Bhi02g01667 169 Pfam Plastocyanin-like domain 42 123 IPR003245 GO:0009055
Bhi02g01667 169 Gene3D - 31 133 IPR008972 -
Bhi02g01667 169 ProSiteProfiles Phytocyanin domain profile. 31 131 IPR003245 GO:0009055
Bhi02g01667 169 SUPERFAMILY Cupredoxins 32 129 IPR008972 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bhi02g01667 - - - csv:116401709 253.832
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bhi02g01667 Bhi-Chr2:45858557 Bhi11g02902 Bhi-Chr11:78591152 1.98E-29 dispersed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Bhi06g00600 . 16 131 Phytocyanin Superfamily AT1G48940 56.4 1.6e-36 150.2
Bhi11g02902 . 13 165 Phytocyanin Superfamily AT3G01070 54.8 1.6e-38 156.8
Bhi04g00052 . 7 171 Phytocyanin Superfamily AT2G25060 55.7 7.3e-45 177.9
Bhi11g02902 . 12 177 Phytocyanin Superfamily AT5G15350 53.9 1.0e-48 190.7
Bhi04g00052 . 16 171 Phytocyanin Superfamily AT4G31840 56.4 4.9e-46 181.8
Bhi06g00600 . 16 131 Phytocyanin Superfamily AT1G48940 56.4 1.6e-36 150.2
Bhi04g00052 . 9 172 Phytocyanin Superfamily AT5G25090 50.3 8.0e-39 157.9
Bhi04g00052 . 7 171 Phytocyanin Superfamily AT2G25060 55.7 7.3e-45 177.9
Bhi04g00052 . 16 171 Phytocyanin Superfamily AT4G31840 56.4 4.9e-46 181.8
Bhi11g02902 . 13 165 Phytocyanin Superfamily AT3G01070 54.8 1.6e-38 156.8
Bhi11g02902 . 12 177 Phytocyanin Superfamily AT5G15350 53.9 1.0e-48 190.7
Bhi02g01667 . 29 161 Phytocyanin Superfamily AT2G27035 52.2 1.6e-38 156.8
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003401 0 1 0 1 1 2 2 2 2 2 2 2 2 2 2 2 2 1 2 2 1 2 1 1 1 2 2 3 3 1 49
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bhi02g01667 Bhi_Chr02 FPKM 0.990496 1.827983 4.204073 4.334086 1.155686 0.619373 0.837967 7.884759 8.108769 6.688394