Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bhi02g01835 TCAAACTAGGAGGACCAAAACGCTATTTTAACCATTTTTCTTAAAAGGCTATGGGTATATATATGTATTTGTTATCTATTTACTTTTGGCATTGCGTTATTTAAATAATAACCAAACCCGCGAAAAAAGAATGGAACTCGCCGGTGCTCAGCTCTGGTCCGGTATTTTCGAGGCTCAAAAACCATTGCAAAGTCATAATCCGAGAGCTTCAAGTTGCCAGGATTTTTGGGATTGCATTGTCTGTTATGTTAGTAAGAGGTTAATTAAGAGGTGTTAAAGCAGAAAATGGCGGATAAGAAAGGAATGGAACAACTTGTTTTACGAATTTTGGAAGGTGAAGAAGGAGTTGACACAAGTAAAGATCTCACTAAACCCTCTGTTTCTTCTTTTCCTGATTTTGACCTAAAAGAAACTCGGAGTTTTAGGTGCACAATTCCGCAATCCGTGGTTGGGAGTTCTCCTTCACATGAGATTTCCAGAATGTCTCCCCTTAAACCTCCAAAAATTCCAGGCGAAACGGCGATTCGACGCCCATCATTTGCTCGTTCGTCGTTTTCAAAGCCAAAATCGAGGTTAATAGAGTCTCCTTGTCCTGATAGTGCAAGTTTAGCAGAAGAAAAGGCTAAAGCAAAATCAACATTGTATAGCTCTCCTAAGATGGACTCCCCAGCTAAGATAACCACTGTGACTAGTCCTAAAGAAGCTTTGAAGTCGGCTCCGATAACTCCGAAAACACCATTGATTGGAACTACTGGAAGTGAGGAGGAAGATGATGAAGAAGTTTACAAAACTGCAGAACTGAAAGTGAAAGAAAGATCAGGGAAGAAATTGAAAAGAACAGTTTTAATTGAATGGGTTGCATTTTTGTGCTTAACAGGTTGTTTAATTGCTAGCTTAACAATAGACAAGTTGGTGACTAAAGAGATATGGGGATTAGGACTCTGGAAATGGTGTGTTCTGGTGTTAGTTAGTTTCTGCGGTCGTTTGTTTTCGCAATGGTTTATCAATTGCCTGGTTTTCTTGATTGAAAGAAACTTTCTACTTAAAAGAAAGGTTCTTTATTTTGTCTATGGTCTGAGGAAGAGTGTTATCATTTTTATTTGGCTGGGTTTGGTTCTCCTAGCCTGGGGTCTATTATTTGATCAAAGCAGCAAGAGATCTAAGAAAGGCAATGAGATTCTGAATTACATTACACGAGCTCTCGGTGCTTCTCTCATTGGAGCTGGATTATGGCTGGTGAAAACTTTGATGGTGAAGATACTAGCTGCTTCTTTTCAATGCGCTAGATTCTTCGATCGGATTCAAGAATCAATCTTCCATCAATATATACTACGCATCCTATCAGGGCCTCCAATCATGGAGATGGCGGAGAGTGTCGGGAGAGCAGCGAGCACAGGGCAGTTGAGTTTCAGGCATTTGAAGAAAGAAAGTGATGGTGGGAATGAAGGAAAAGAAGAGGTTATTGATGTAGATAAACTCAAAAAGATGAAGCAAGAAAAAATCTCTGCTTGGACTATGAGAGGGCTAATCAATGTTATAAGGAGTTCAGGGCTGTCCACCATCTCTAATACAATAGAGAATTTCAAAGAGGAAGAGAATGAGCAAAAAGATAAGGAGATTAACAGCGAATGGGAAGCAAGGGCCGCAGCTTACCAGATTTTCAGAAACGTTGCAAAACCGGGTAGCAAGTATATTGATGAAGACGACCTCTTTCGTTTTATGAGTAAGGAGGAAATTGATAATGTGCTGCCATTGTTTGAAGGAGGAGTTGAGACGGGAAAGATAAAGCGAAAAACCCTGAAGAATTGGCTGGTGAATGTTTACATTGAACGCAAGTCGCTAGCTCACTCATTGAATGACACCAAGACTGCCATAGAGGAACTAAACAAGCTTGCTTCTGCAATTGTACTGATTGTGATTATCATTGAATGGCTACTTTTGATGGGTTTCTTGACCACGCAAGTACTCGTCTTCGTTTCATCACAGATTCTGTTGGTGGTTTTCATGTTCGGTAACACTGCCAGAACTGTATTTGAAGCCATCATATTCGTATTCGTGATGCATCCATTCGATGTGGGGGATCGTTGTGTCGTAGATGGTGTGCAGATGGTTGTTGAAGAAATGAACATTTTAACCACAATCTTCTTGAGATATGACAATGAGAAGATCTTCTATCCAAATTCTGTGCTAGCCACCAAACCCATCAGTAACTACTACAGGAGCCCTGAAATGAGTGATTCGATCGAATTTTCCGTCGACTTTTCCACTTCAATCGAAAGCATTGGAGCTCTAAAAGCAAGAATAAAAACATACTTAGAAAGCAAACCCCAGTTCTGGCGACCGAACCATAGTGTCATCGTGAAGGAGATCGAGAATATCAACAAGATGAAACTAGCTCTGTGTGTCAATCACACCATAAACTTTCAAAACTATGGCGACAAGAGCAGTCGCAGATCGGATTTAGTCTTGGAGCTGAAGAAAATTTTCGAAGATCTCGGTATCAAGTATCATCTTTTACCTCAAGAAGTTCAGCTCAACTATGTGGGTTCAGCAGCTTCTGTGATTCCATCATCTCAAAGATGAAGATGAAGGTCATTTCTTCAGTTGCTCATTTTCTTACCAAAGCTCTCAAAATTACAAAAACAATGGCTAACTCATCTCCTTTTTGGCTTCAATGGCTTTGAATCTTTGATGGGAAGGGAACAAATTTTGAGTTGTACCAGTAAGGGAAAAAGAATTGTAAAATATTGATTAGTTGTTCTCAACAAATTTTGAATTTTATTTATTGACAATTTATGAGAATTGACTATTGAAATTTAACAACAACAGTGTTGACTTTTTGTTTCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAAAAAAAAAAAAAAAAAAATTGTTTTGCAATGGCGTTAGTGACAATAAGTTTAAAAAATGTTTTTTTTTTAATCTTTAATTGATGTTCAATGTAGAGTCTGAACCGTTCATACTGATCTGGCTATGTCGTGAACTATGCCAATGTTGATTGATTCTTTTTTAAAATTCAAAAATTTGTTACACATATTTAAAGTTAGACATAAAATTTGAATTCATATATAGTAAATTAATTCATTTTATAAATTTTGAATATGTTGGTGATTTATTATATAAATAGATTTTTTCAAAGACAAATAAACATAAACTTTAAAGTTCCACGACCAAATTAAAAAAAATATCAAATTACAAGTTTAATCTCTAAACTTGGTCTATTTGACTCTAAATTTTTAATTTTATGTCTAATGACTTCCTAAATTAAAAATTTTATCTAATAGATTCTTAAACTTACAATTTTGCATTTAATAGGATCTTAATATATTTAATTTTTTCTTAAATTAAAGAATATATTTAATTTTTCCAACATAAAATTACATGATAATTGTTCTATTAAATAAATATAAATTGAGGTTTGTCAACCTTAAAATCTAAATTTTATTCGCTAGATACGAGAATTTGAGAGAAGAATAAAAGAGAGGAAATTTTGTCAAAATAGGTGAAAGACCTAATAACATACAAAAATTGAAAATCTTGGACATCCATTAGACAAATTTCTTCCAAAAAAAAATTATTGGATACAAAATTAAAAGCGCAAGAATCTCTTAAACACTTTTTAAAATTTAGACACCTATTAATCCTATTAGATAATTGATTAAATTGTTAATTCAATCCATAAAGTTTATAATTAGAAAATATTTTTTTATAATTAGCTAATAAATTCCATAGTGTGATGAGGAAAATTAAGATAATCATTATATTTTTAGTAATATTTGTTTAGTTGTTAATTTAGATTAATTAATGTTAATTAGAATTATTTAGTTAATTGTCTTATTTTTTTGTAATGCTATAAATAGTCAATTTGAGTATTCTCTCGTCTCTTTATGGATGAAC 3951 33.94 MADKKGMEQLVLRILEGEEGVDTSKDLTKPSVSSFPDFDLKETRSFRCTIPQSVVGSSPSHEISRMSPLKPPKIPGETAIRRPSFARSSFSKPKSRLIESPCPDSASLAEEKAKAKSTLYSSPKMDSPAKITTVTSPKEALKSAPITPKTPLIGTTGSEEEDDEEVYKTAELKVKERSGKKLKRTVLIEWVAFLCLTGCLIASLTIDKLVTKEIWGLGLWKWCVLVLVSFCGRLFSQWFINCLVFLIERNFLLKRKVLYFVYGLRKSVIIFIWLGLVLLAWGLLFDQSSKRSKKGNEILNYITRALGASLIGAGLWLVKTLMVKILAASFQCARFFDRIQESIFHQYILRILSGPPIMEMAESVGRAASTGQLSFRHLKKESDGGNEGKEEVIDVDKLKKMKQEKISAWTMRGLINVIRSSGLSTISNTIENFKEEENEQKDKEINSEWEARAAAYQIFRNVAKPGSKYIDEDDLFRFMSKEEIDNVLPLFEGGVETGKIKRKTLKNWLVNVYIERKSLAHSLNDTKTAIEELNKLASAIVLIVIIIEWLLLMGFLTTQVLVFVSSQILLVVFMFGNTARTVFEAIIFVFVMHPFDVGDRCVVDGVQMVVEEMNILTTIFLRYDNEKIFYPNSVLATKPISNYYRSPEMSDSIEFSVDFSTSIESIGALKARIKTYLESKPQFWRPNHSVIVKEIENINKMKLALCVNHTINFQNYGDKSSRRSDLVLELKKIFEDLGIKYHLLPQEVQLNYVGSAASVIPSSQR 765
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 49759567 49764173 - XM_039022983.1 Bhi02g01835 28357

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bhi02g01835 765 Coils Coil 423 443 - -
Bhi02g01835 765 PANTHER MECHANOSENSITIVE ION CHANNEL PROTEIN 4 756 - -
Bhi02g01835 765 PIRSF Memb_At2g17000 17 764 IPR016688 -
Bhi02g01835 765 Gene3D - 594 643 IPR023408 -
Bhi02g01835 765 MobiDBLite consensus disorder prediction 52 108 - -
Bhi02g01835 765 Pfam Mechanosensitive ion channel 535 740 IPR006685 GO:0016020|GO:0055085
Bhi02g01835 765 PANTHER MECHANOSENSITIVE ION CHANNEL PROTEIN 5 4 756 IPR016688 -
Bhi02g01835 765 SUPERFAMILY Sm-like ribonucleoproteins 584 643 IPR010920 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bhi02g01835 K22048 MSL4S; mechanosensitive ion channel protein 4/5/6/7/8/9/10 - csv:101209209 1366.67
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bhi02g01835 Bhi-Chr2:49759567 Bhi09g03090 Bhi-Chr9:79739624 0 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi11g106 . . . . . . Bma07g00558 . . . . . . . Sed08g0905 . Cpe18g00332 Bhi02g01835 Tan09g1100 Cmetu02g0585 . Hepe09g0905 . . . . . . . . . . . Cone4ag0813 Cone7ag0765 . . . . Blo08g00359 . Bda02g00375 Bda09g01071 Bpe08g00538 . . . . . . . . . . . . . . . . . . . Cla03g01465 Cam03g1541 Cec03g1583 Cco03g1576 Clacu03g1565 Cmu03g2121 Cre03g1794 . . . .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Bhi04g00939 . 10 693 Mechanosensitive Ion Channel Family AT5G10490 56.5 2.6e-196 682.9
Bhi11g00900 . 9 724 Mechanosensitive Ion Channel Family AT5G10490 56.1 3.4e-196 682.6
Bhi11g00903 . 9 724 Mechanosensitive Ion Channel Family AT5G10490 56.1 3.4e-196 682.6
Bhi11g00902 . 9 724 Mechanosensitive Ion Channel Family AT5G10490 56.1 3.4e-196 682.6
Bhi11g00901 . 9 724 Mechanosensitive Ion Channel Family AT5G10490 56.1 3.4e-196 682.6
Bhi11g00904 . 1 604 Mechanosensitive Ion Channel Family AT5G10490 60.8 1.7e-187 653.7
Bhi04g00939 . 10 673 Mechanosensitive Ion Channel Family AT1G58200 57.6 4.8e-198 688.7
Bhi11g00900 . 6 690 Mechanosensitive Ion Channel Family AT1G58200 52.2 8.7e-176 614.8
Bhi11g00903 . 6 690 Mechanosensitive Ion Channel Family AT1G58200 52.2 8.7e-176 614.8
Bhi11g00902 . 6 690 Mechanosensitive Ion Channel Family AT1G58200 52.2 8.7e-176 614.8
Bhi11g00901 . 6 690 Mechanosensitive Ion Channel Family AT1G58200 52.2 8.7e-176 614.8
Bhi11g00904 . 1 570 Mechanosensitive Ion Channel Family AT1G58200 56.8 4.5e-164 575.9
Bhi10g01195 . 43 920 Mechanosensitive Ion Channel Family AT1G53470 55.9 8.2e-259 891.0
Bhi05g01668 . 91 959 Mechanosensitive Ion Channel Family AT1G53470 50.9 4.0e-237 818.9
Bhi10g01195 . 43 918 Mechanosensitive Ion Channel Family AT3G14810 53.6 1.4e-247 853.6
Bhi10g01195 . 43 920 Mechanosensitive Ion Channel Family AT1G78610 59.6 3.1e-279 958.7
Bhi05g01668 . 59 959 Mechanosensitive Ion Channel Family AT1G78610 55.3 1.1e-268 923.7
Bhi05g01669 . 59 726 Mechanosensitive Ion Channel Family AT1G78610 51.7 2.1e-171 600.5
Bhi10g01195 . 216 920 Mechanosensitive Ion Channel Family AT2G17000 61.4 5.5e-236 815.1
Bhi05g01668 . 273 957 Mechanosensitive Ion Channel Family AT2G17000 57.9 3.2e-220 762.7
Bhi05g01669 . 273 725 Mechanosensitive Ion Channel Family AT2G17000 59.7 2.4e-143 507.3
Bhi09g03087 . 65 720 Mechanosensitive Ion Channel Family AT5G19520 50.6 3.6e-175 612.8
Bhi09g03089 . 65 720 Mechanosensitive Ion Channel Family AT5G19520 50.6 3.6e-175 612.8
Bhi09g03088 . 65 718 Mechanosensitive Ion Channel Family AT5G19520 50.4 3.4e-173 606.3
Bhi02g01835 . 58 750 Mechanosensitive Ion Channel Family AT5G12080 52.5 2.0e-194 676.8
Bhi09g03087 . 64 720 Mechanosensitive Ion Channel Family AT5G12080 54.5 1.6e-186 650.6
Bhi09g03089 . 64 720 Mechanosensitive Ion Channel Family AT5G12080 54.5 1.6e-186 650.6
Bhi09g03088 . 64 718 Mechanosensitive Ion Channel Family AT5G12080 54.2 5.5e-184 642.1
Bhi09g03090 . 79 725 Mechanosensitive Ion Channel Family AT5G12080 53.4 8.8e-182 634.8
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003553 4 1 2 4 2 1 1 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 4 1 3 47