Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bhi02g02029 TTTTCGAAATACAAAACTCTTTCTTAAGGAATCTCTCTGATTTTCTCTTCTTTCTTTTCTTTCTTTTAAGCGGACACAACCCCAAGAACAAAAGAAAAATATGAAAAACTCTTCTCATTTCAAACCCCAACTAACAAACGTAACAAAAAAAAGCTAAATTATGACATGGGTCATCTTCCATTCTTCGCCATAGATCTCTTTCTCATCGATTTTCCCCTTTTCCCTTTCAGGGTATCTAAGATCTTGTTCACTTGAGTATCATCTGTCTCTTAAAAAGCTGTCTGAGATTTATTTCAAAGTTCAAACGTGATGGATCAGCAAGGGCATGGCCAGCCTCCGTCCATGGGAGCGGTTGGCAGTGGAGGTCAGATGGCATATGGTAGCAACCTCTACCATCCCAGCCAAATGACTGTAGGTCCGACTTCGGGATCTGTCGTTACATCAGTCGGAGGTATTCAGTCTACGAGTCAACCTGGTGGAGCTCAGCTTGCTCAACATCAACTTGCTTATCAACATATCCACCAGCAGCAGCAACAACAGCTTCAACAACAGCTCCAGACTTTTTGGGTAAATCAATACCAAGAGATTGAGAAGGTAACAGACTTTAAGAACCATAGTCTTCCCTTAGCAAGGATCAAGAAGATCATGAAGGCTGACGAGGACGTACGAATGATATCGGCTGAGGCACCTGTTTTATTTGCTAGGGCATGTGAAATGTTCATCCTGGAATTGACTTTACGGTCTTGGAATCATACCGAAGAGAACAAGCGCAGGACACTTCAAAAGAATGATATTGCTGCAGCTATCACAAGAACTGACATTTTTGACTTTCTGGTTGATATAGTACCGAGGGAGGATCTGAAAGACGAAGTACTCACGTCGATTCCAAGAGGATCAATGACAGTTGGGGGGCCTGGAGAAGCACTTCCTTACTGCTATATGCCGTCTCAGCATGCACCTCAGGTTGGGGCACCTGGAATGATCATGGGTAAGCCCGTGATGGACCCAACCATGTATGCTCCACAATCACACCCTTACATGCCTCCACAAATGTGGCAGCACGCACAAGATCAAGCCCCTCCTGATCAATAGTAGCTTGCAGCATGGAGGTGAAGGTGAATCACGGAGTCTCCTCCGAAGCAAGCTCACAACGATGCCAAACCACACACACACACACCAGACCGACAGGAGAATTTATACTGAAGATTTGATCTGAAGCCCTACATAATACTTTCTGTAGATATTTTGCTTGACAAGATTAGATCATCTTGATTGAGCTAGAAAAAGTCTCTTCTTTTTCTATTCATGCTTTATTTCTATTCTGCATATTGGAAATGACAATTGAAAGGAATGTATAACTTCATATGATACTCCAAAAATTTGATGCTTACCTTGACATTCCCATATAAAAAAAACTGTAGTTTCCTTA 1429 42.34 MDQQGHGQPPSMGAVGSGGQMAYGSNLYHPSQMTVGPTSGSVVTSVGGIQSTSQPGGAQLAQHQLAYQHIHQQQQQQLQQQLQTFWVNQYQEIEKVTDFKNHSLPLARIKKIMKADEDVRMISAEAPVLFARACEMFILELTLRSWNHTEENKRRTLQKNDIAAAITRTDIFDFLVDIVPREDLKDEVLTSIPRGSMTVGGPGEALPYCYMPSQHAPQVGAPGMIMGKPVMDPTMYAPQSHPYMPPQMWQHAQDQAPPDQ 260
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 55177480 55180645 + XM_039023143.1 Bhi02g02029 28551

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bhi02g02029 260 PANTHER NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT C-9 1 259 - -
Bhi02g02029 260 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 103 166 IPR003958 -
Bhi02g02029 260 Gene3D Histone, subunit A 65 181 IPR009072 GO:0046982
Bhi02g02029 260 PANTHER HISTONE-LIKE TRANSCRIPTION FACTOR CCAAT-RELATED 1 259 - -
Bhi02g02029 260 SUPERFAMILY Histone-fold 71 175 IPR009072 GO:0046982
Bhi02g02029 260 MobiDBLite consensus disorder prediction 238 260 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bhi02g02029 K08066 NFYC, HAP5; nuclear transcription factor Y, gamma - csv:101209664 449.514
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bhi02g02029 Bhi-Chr2:55177480 Bhi02g02031 Bhi-Chr2:55177480 0 dispersed
Bhi02g02028 Bhi-Chr2:55177350 Bhi02g02029 Bhi-Chr2:55177480 0 tandem
Bhi02g02029 Bhi-Chr2:55177480 Bhi02g02030 Bhi-Chr2:55177480 0 tandem
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Bhi02g00523 . 35 219 CCAAT-HAP5 Transcription Factor Family AT3G48590 89.5 1.4e-88 323.6
Bhi02g02032 . 82 250 CCAAT-HAP5 Transcription Factor Family AT3G48590 65.1 1.2e-52 204.1
Bhi02g02028 . 82 250 CCAAT-HAP5 Transcription Factor Family AT3G48590 65.1 1.2e-52 204.1
Bhi02g02029 . 82 250 CCAAT-HAP5 Transcription Factor Family AT3G48590 65.1 1.2e-52 204.1
Bhi02g02031 . 82 250 CCAAT-HAP5 Transcription Factor Family AT3G48590 65.1 1.2e-52 204.1
Bhi02g02030 . 82 250 CCAAT-HAP5 Transcription Factor Family AT3G48590 65.1 1.2e-52 204.1
Bhi05g00797 . 82 225 CCAAT-HAP5 Transcription Factor Family AT3G48590 68.8 1.6e-52 203.8
Bhi05g00796 . 82 225 CCAAT-HAP5 Transcription Factor Family AT3G48590 68.8 1.6e-52 203.8
Bhi05g00794 . 82 225 CCAAT-HAP5 Transcription Factor Family AT3G48590 68.8 1.6e-52 203.8
Bhi05g00795 . 82 225 CCAAT-HAP5 Transcription Factor Family AT3G48590 68.8 1.6e-52 203.8
Bhi02g02032 . 1 260 CCAAT-HAP5 Transcription Factor Family AT1G08970 55.6 7.6e-55 211.5
Bhi02g02028 . 1 260 CCAAT-HAP5 Transcription Factor Family AT1G08970 55.6 7.6e-55 211.5
Bhi02g02029 . 1 260 CCAAT-HAP5 Transcription Factor Family AT1G08970 55.6 7.6e-55 211.5
Bhi02g02031 . 1 260 CCAAT-HAP5 Transcription Factor Family AT1G08970 55.6 7.6e-55 211.5
Bhi02g02030 . 1 260 CCAAT-HAP5 Transcription Factor Family AT1G08970 55.6 7.6e-55 211.5
Bhi05g00797 . 28 180 CCAAT-HAP5 Transcription Factor Family AT1G08970 70.6 1.8e-48 190.3
Bhi05g00796 . 28 180 CCAAT-HAP5 Transcription Factor Family AT1G08970 70.6 1.8e-48 190.3
Bhi05g00794 . 28 180 CCAAT-HAP5 Transcription Factor Family AT1G08970 70.6 1.8e-48 190.3
Bhi05g00795 . 28 180 CCAAT-HAP5 Transcription Factor Family AT1G08970 70.6 1.8e-48 190.3
Bhi02g00523 . 34 133 CCAAT-HAP5 Transcription Factor Family AT1G08970 83.0 1.1e-42 171.0
Bhi02g02032 . 16 250 CCAAT-HAP5 Transcription Factor Family AT1G54830 59.6 7.9e-62 234.6
Bhi02g02028 . 16 250 CCAAT-HAP5 Transcription Factor Family AT1G54830 59.6 7.9e-62 234.6
Bhi02g02029 . 16 250 CCAAT-HAP5 Transcription Factor Family AT1G54830 59.6 7.9e-62 234.6
Bhi02g02031 . 16 250 CCAAT-HAP5 Transcription Factor Family AT1G54830 59.6 7.9e-62 234.6
Bhi02g02030 . 16 250 CCAAT-HAP5 Transcription Factor Family AT1G54830 59.6 7.9e-62 234.6
Bhi05g00797 . 28 224 CCAAT-HAP5 Transcription Factor Family AT1G54830 59.1 3.3e-52 202.6
Bhi05g00796 . 28 224 CCAAT-HAP5 Transcription Factor Family AT1G54830 59.1 3.3e-52 202.6
Bhi05g00794 . 28 224 CCAAT-HAP5 Transcription Factor Family AT1G54830 59.1 3.3e-52 202.6
Bhi05g00795 . 28 224 CCAAT-HAP5 Transcription Factor Family AT1G54830 59.1 3.3e-52 202.6
Bhi02g00523 . 34 193 CCAAT-HAP5 Transcription Factor Family AT1G54830 67.3 2.8e-51 199.5
Bhi02g00523 . 34 192 CCAAT-HAP5 Transcription Factor Family AT5G50480 54.7 5.7e-38 155.2
Bhi02g00523 . 35 219 CCAAT-HAP5 Transcription Factor Family AT5G63470 81.4 1.1e-80 297.4
Bhi05g00797 . 82 225 CCAAT-HAP5 Transcription Factor Family AT5G63470 66.4 6.7e-49 191.8
Bhi05g00796 . 82 225 CCAAT-HAP5 Transcription Factor Family AT5G63470 66.4 6.7e-49 191.8
Bhi05g00794 . 82 225 CCAAT-HAP5 Transcription Factor Family AT5G63470 66.4 6.7e-49 191.8
Bhi05g00795 . 82 225 CCAAT-HAP5 Transcription Factor Family AT5G63470 66.4 6.7e-49 191.8
Bhi02g02032 . 82 250 CCAAT-HAP5 Transcription Factor Family AT5G63470 62.6 8.8e-49 191.4
Bhi02g02028 . 82 250 CCAAT-HAP5 Transcription Factor Family AT5G63470 62.6 8.8e-49 191.4
Bhi02g02029 . 82 250 CCAAT-HAP5 Transcription Factor Family AT5G63470 62.6 8.8e-49 191.4
Bhi02g02031 . 82 250 CCAAT-HAP5 Transcription Factor Family AT5G63470 62.6 8.8e-49 191.4
Bhi02g02030 . 82 250 CCAAT-HAP5 Transcription Factor Family AT5G63470 62.6 8.8e-49 191.4
Bhi05g00797 . 46 213 CCAAT-HAP5 Transcription Factor Family AT1G56170 81.7 2.0e-64 243.0
Bhi05g00796 . 46 213 CCAAT-HAP5 Transcription Factor Family AT1G56170 81.7 2.0e-64 243.0
Bhi05g00794 . 46 213 CCAAT-HAP5 Transcription Factor Family AT1G56170 81.7 2.0e-64 243.0
Bhi05g00795 . 46 213 CCAAT-HAP5 Transcription Factor Family AT1G56170 81.7 2.0e-64 243.0
Bhi02g02032 . 54 218 CCAAT-HAP5 Transcription Factor Family AT1G56170 67.2 4.9e-50 195.3
Bhi02g02028 . 54 218 CCAAT-HAP5 Transcription Factor Family AT1G56170 67.2 4.9e-50 195.3
Bhi02g02029 . 54 218 CCAAT-HAP5 Transcription Factor Family AT1G56170 67.2 4.9e-50 195.3
Bhi02g02031 . 54 218 CCAAT-HAP5 Transcription Factor Family AT1G56170 67.2 4.9e-50 195.3
Bhi02g02030 . 54 218 CCAAT-HAP5 Transcription Factor Family AT1G56170 67.2 4.9e-50 195.3
Bhi02g00523 . 35 158 CCAAT-HAP5 Transcription Factor Family AT1G56170 74.8 6.3e-50 194.9
Bhi07g01165 . 59 340 CCAAT-HAP5 Transcription Factor Family AT3G12480 51.8 4.0e-61 232.6
Bhi04g01469 . 3 135 CCAAT-HAP5 Transcription Factor Family AT5G43250 65.7 1.3e-38 156.8
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000741 2 9 3 3 3 2 3 2 2 2 2 2 4 2 2 4 2 5 3 2 2 2 2 2 2 2 1 17 4 2 95
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
496 PF00808 CBFD_NFYB_HMF 2.80E-18 CL0012 Bhi TF