Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bhi03g00010 CTCTTTTGCTACCTTACTTCCATTTTCTTCTTCTTCCTCTCCTAATCTTTCTGAATACAAGCTGTGTGTGTGGAGAGATTTCACAAAGACAGCAAACAGCCCTTCTTTTTGTTCTGTCTTAAAAGTTCCTTCTTCAACCAGCTCTTTTCCTCATCAGGTAAGTTTGCAAATAAAGGGGTTCCAGAATCAAGAAGAGAAGATGTCAGACTCACCTCAGAGGAAGATGGGAAGAGGAAAGATTGAGATTAAGAGGATCGAAAATACAACAAATCGTCAAGTCACTTTCTGTAAGAGGAGAAATGGGTTGCTCAAAAAAGCTTATGAACTTTCTGTTCTATGTGATGCTGAAGTTGCTCTCATAGTTTTCTCAAGCCGTGGCCGCCTCTATGAGTATGCTAACAACAGTGTGAAGGCAACAATTGATAGATACAAGAAGGCATCCTCAGATACCTCCAACACTGGATCTACTTCTGAAGCTAACACTCAGTTTTACCAACAAGAAGCTGCCAAACTCCGACTTCAGATTGGTAGCTTACAGACCTCAAACAGGAACATGCTGGGCGAGTCTCTAAGTTCTTTGAGTGTAAAAGATCTGAAAAACCTGGAGGGCAAACTTGAGAAAGGGATTAGCAGAATTAGGTCCAAAAAGAATGAACTTCTCTTTGCAGAAATTGAGTATATGCGGAAAAGGGAAATTGATTTGCACAACAACAATCAGCTGCTTCGAGCAAAGATAGCTGAGAGTGAAAGAAATGTGAACATGATGGGAGGAGAATTTGAGCTGATGCAATCCCATCCGTACGATCCAAGAGACTTCTTCCAAGTGAACGGCTTACAACATAATCATCAATATCCACGCCAAGACAACATGGCTCTTCAATTAGTATAAGTTAATAATAAAATGATTTGAAGCACTCTGATTGGTGGATTGGATTATAAGGAGTGCAGGCCATTTGCCAATTTCAAGGTACTCAAAAAGGAAGTTGGTTGAAGATCATCTCTCATCTATATGCCTTAACAAAAGTCTTAGCTTCTGGACTTTAAAAAAAGACTTATTCTAATATATAAATATAATGTGTAATGTTGTTGTATGGTATGCATCAAAAAACATTAATAACCTATCTTTGTCTTAAATTTATGTCTCTTTGATACGAACCGCTAA 1162 38.47 MSDSPQRKMGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYANNSVKATIDRYKKASSDTSNTGSTSEANTQFYQQEAAKLRLQIGSLQTSNRNMLGESLSSLSVKDLKNLEGKLEKGISRIRSKKNELLFAEIEYMRKREIDLHNNNQLLRAKIAESERNVNMMGGEFELMQSHPYDPRDFFQVNGLQHNHQYPRQDNMALQLV 229
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 156760 163218 + XM_039025013.1 Bhi03g00010 28787
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bhi03g00010 229 ProSiteProfiles K-box domain profile. 95 185 IPR002487 GO:0003700|GO:0005634|GO:0006355
Bhi03g00010 229 PANTHER AGAMOUSB 6 223 - -
Bhi03g00010 229 SMART madsneu2 9 68 IPR002100 GO:0003677|GO:0046983
Bhi03g00010 229 PANTHER MADS BOX PROTEIN 6 223 - -
Bhi03g00010 229 Pfam K-box region 91 179 IPR002487 GO:0003700|GO:0005634|GO:0006355
Bhi03g00010 229 ProSitePatterns MADS-box domain signature. 11 65 IPR002100 GO:0003677|GO:0046983
Bhi03g00010 229 Gene3D - 21 102 IPR036879 GO:0003677|GO:0046983
Bhi03g00010 229 CDD MADS_MEF2_like 10 83 IPR033896 GO:0000977|GO:0045944
Bhi03g00010 229 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 18 65 IPR002100 GO:0003677|GO:0046983
Bhi03g00010 229 ProSiteProfiles MADS-box domain profile. 9 69 IPR002100 GO:0003677|GO:0046983
Bhi03g00010 229 Coils Coil 132 152 - -
Bhi03g00010 229 PRINTS MADS domain signature 11 31 IPR002100 GO:0003677|GO:0046983
Bhi03g00010 229 PRINTS MADS domain signature 31 46 IPR002100 GO:0003677|GO:0046983
Bhi03g00010 229 PRINTS MADS domain signature 46 67 IPR002100 GO:0003677|GO:0046983
Bhi03g00010 229 SUPERFAMILY SRF-like 10 82 IPR036879 GO:0003677|GO:0046983
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bhi03g00010 Bhi-Chr3:156760 Bhi06g00235 Bhi-Chr6:5559278 3.84E-98 dispersed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
511 PF01486 K-box 7.90E-28 No_clan Bhi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bhi03g00010 K09264 - csv:101221430 436.032