Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bhi03g00112 AGAGTTGATTTCACAGAGGGTTCTATAAAAATGAGAGACATCGAAGACTCTCTCATAGTCATAGCGCGTAATCTCTCTCTAGAGTCTGTCCCTTACCTTTTTCCCTAATCTCTGGTACAGAAAAGACAGCATGAAATAATATTGGTTTCGTTGATTGATTGTGTTTTACAGAGTACCCAACAAGAGAAAACAGAGAATTGGAGAGAGAAACAGAGAGGTAAAGCCAGCCTTAAAGGGCTTTGGTGAAGAAAAGCTTCAGTAGCAGCAAAGAAGAGAGAAAAAAAAGTCACCCACCATTGGCAACTCAACTCCTCTGCTGCAATTCCAGCAGCTTTCCATTTCGTTTTGTCACAATAAACACCCAATTTTGGCTCCACCAGTTAACCCTTTTGTTTCTTCATTGTATACCCAGTTCATTCAATTGAACTTGTGTTTGTACGGAAGGAACGAAGAAAGGAAGGAAGGAACCCCCCATCATTATTTTCTTTTACCTGAAATCATTGTGTTTGTTTCCCGTGATGTTAATGGCCACCAAGCTCTAGCTTCTTCTACTGGGGTTCTACTGTACTGAGATCTGCCTTTCTCTTTGCTTCTTGCTTTGGGTTTTTGGCGTTTTAGGGGCCGAGATCTGATTTTTTCTCCCTTTTGCATTTCTGGGTTTTCTTTGATTTAACTCTGTTCTTGTTGGGTTATTGAAGGAATTTGGTTGAATCGTTGGAATTCTTCTCCCCTTAAGTTTAGAATTATAGTTTCTTTGGTTTATCAGTGGATTTTATTGGGTTCTGGGTATTGGGTTTTGTTTGTTGAACTTCGAGGTTGCTGTGGCATGAAGTCGCCAATTGAAGAGTTGTGTATGTGGGGGGTTCGGGTAGAGAGAATTAGATGCGGGTGAGGTTGAAATTGATCGTGTTCTGTAGCGAAACCGGCTTCGGCTGAGATTTTGGGCGGTGGGGGTTGGGTTGTGATATTCCCAGATGAGGTTCCGCTGTTTGTAGTTTACTTTTTGAAGATTCAGATTGATTTGCTGGTCGATTTATGGTATTTCTGTAGTGATAAGAAAGGTTGTGCAAAAAAGGTTGTTCTGCAGTCGTTGTTGCCTTCTTGGAAGATACTTTGGTGCTTCAAATTTGTGGGTCAATTTCTTTTTTGGTTTGTTGGATCTCACTGAAATGAGGCTTTCAACTGCTGGTTTTAGTCCTCAGGCCCCGGAAGGGGAGAGGAGAGTTCTTAACTCGGAGCTTTGGCATGCATGCGCGGGCCCTCTTGTTTCTCTACCTACTGTTGGAAGTCGGGTTGTTTATTTTCCACAGGGTCATAGCGAGCAGGTTGCCATATCAACCAACAGAGAAGTGGATGCCCATATACCCAGTTATCCAAGCTTGCCGCCACAACTTATCTGTCAGCTTCACAATGTTACAATGCATGCAGATGTTGAGACAGATGAAGTGTATGCCCAAATGACCTTGCAACCGCTCACTGCTCAAGAGCAAAAGGAGCCTTATCTTCCTGCTGAGTTGGGTGCCCCCAGCAAACAACCAACCAATTATTTTTGTAAAACATTGACAGCAAGTGACACAAGTACACATGGAGGATTTTCTGTTCCTCGTCGTGCTGCTGAGAAAGTGTTTCCTCCATTGGACTTCTCTCAGCAGCCACCTGCTCAGGAGTTAATTGCAAAGGATCTGCACGATAATGATTGGAAATTTAGGCATATCTTTCGTGGCCAGCCCAAAAGGCATCTTCTTACAACTGGATGGAGCGTGTTTGTAAGTGCTAAGAGGCTTGTTGCTGGCGATTCGGTTATCTTTATTTGGAATGAAAAGAATCAATTACTATTGGGGATCCGTCGAGCTAATCGACCACAAACGGTGATGCCCTCATCGGTTTTATCTAGTGACAGCATGCACTTGGGGCTTCTTGCTGCTGCAGCACATGCAGCTGCTACAAATAGTCGGTTTACGATATTTTATAATCCAAGGGCTAGCCCATCAGAGTTCATCATACCTTTGGCCAAGTATGTCAAAGCTGTGTACCACACCCGTGTTTCAGTTGGTATGCGTTTTAGAATGCTATTTGAAACAGAAGAATCGAGCGTTCGTCGTTACATGGGGACCATTACTGGTATCAGCGATTTAGATTCTACCCGGTGGCCAAATTCACACTGGCGCTCAGTCAAGGTTGGATGGGATGAATCTACAGCTGGGGAGAGACAACCAAGGGTTTCCTTATGGGAGATCGAGCCACTTACAACCTTCCCAATGTATCCTTCTCCATTTCCCCTCAGGCTTAAGCGACCCTGGCCAACTGGATTTCCCTCTTTCCATGGTCTCAAAGAGGATGATCTGGGATTAAATTCTCAACTAATGTGGCTACGAGGAGATGGTCTAGATCGTGGAATTCAACCTCTAAACTTCCCTGGAATTGGAGTTGCACCTTGGATGCAGCCGAGGCTTGATGCTTCTATGGTGGGTCTGCAGCCGGAGATATATCAAGCAATGGCTGCTGCTGCACTACAGGAGATGAGAACCGTAGATCCTGCTAAGGCGCAGGCTGCTTCGCTTCTTCAATTCCAGCAATCCCAAAATCTTTCCAATAGGCCTGCTACTTTCATGCCACCTCAAATGTTGCAGCAGCCTCAGCCTCAACCTCCACAGACCTTTCTTCAAAGTGATGAAAACCAACATCTCTCTCATTCTCAGGCCCAAAGCCAGCCTACTGTTCTTCAGCAGGAGATAAAGCATCAAACATTCAACAACCAGCAGCAACAACAGCAACAACAGCAACAACAGCAACAACAGCAACAATCACAACAAGTGTTTGATCACCAACAAATTCCAAGTCCAATATCTACAATGTCTCAGTTCAGTTCTGCATCCCAATCCCAATCCCAATCCCTGCAAACTATTCCTCCATTATGTCGGCAGCAGAGTTTTTCTGATTCAAATGCCAACCATGTAACGAGTCCTATCATTTCACCCTTGCATAGCCTGTTAGGTTCATTTCCGCAAGATGAATCATCTCAATTGCTTAATCTGCCTCGAACCAACCCCATGATCCATTCATCTACATGGCCGTCAAAGCGAGCTGCAGTCAATCCTCTTCTCTCTTCTGGAAATTCTCAGTTTGTTCTTTCCCAAGGGGAAAACATGGGGACAACTCAGACTAATATCTCTCAAAATGCTATTTCATTGCCGCCTTTTCCTGGAAGAGAGTGTTCATTAGATCAAGGGAATGCCGATCCGCAGAGTAATCTTCTCTTTGGTGTCAACATAGAGCCTTCATCTCTTCTAATGCAGAATGGTATGCCGAATCTTAGGGGGATTTGCAGTGACAGTGACTCAACAGCTATACCTTTTTCATCAAATTATGTTAATACTGCTGGTACCAACTTCTCTGCCAATCCAACTGGGACAGGGACACCTTCCAATTGCATTGAGGATTCAGGTTTTTTGCAGTCTCCAGAAAACACAGGCCAAGTAAACCCACCAACCAGAACCTTTGTAAAGGTTTACAAGTCGGGGTCCTTTGGTAGATCACTGGATATTTCCAAATTCAGTAGCTACCACCAGCTACGCAGTGAGCTTGCTCACATGTTCAGCCTTGAAGGCGAGTTGGAGGACCCTTTGAGATCAGGCTGGCAGCTTGTATTCGTTGACCGGGAAAATGATGTCCTTCTTCTTGGGGACGATCCCTGGCCGGAGTTTGTCAACAGCGTGTGGTGTATCAAGATACTTTCACCGCAGGAAGTGCAGGAGATGGGCAAACGTGGCCTAGAGCTCTTGAACTCGGTCCCAATTCAGAGGCTCTCAAATGGCAGTTGTGATAACTACGCCAACAGACAGGAGTCATCCAGAAATTTGAGTACGGGGATAACTTCTGTCGGGTCTCTCGAGTACTGAGGCATTTAACCGGTCAACATGCCTTCTCTGTACTATTAGCTCTCTCGGTTACTTTTCTTGAGAATGTAAAAGCAATCTTAGTTTGTTAACTTGAGCTCAGATATGAGCCAGAAACTGTAATTAATTAAGTGATTCCTTCTCTCCCTTCTGTTTTTCTCATACATACAGGTATCAGGACAGCTCTGTATGACTGGAGATAGCTTTTGCTATTTGCTATATATTGCAGTCTATAAATGAAGTTCTATTAGAATGGCTAAAA 4158 44.3 MRLSTAGFSPQAPEGERRVLNSELWHACAGPLVSLPTVGSRVVYFPQGHSEQVAISTNREVDAHIPSYPSLPPQLICQLHNVTMHADVETDEVYAQMTLQPLTAQEQKEPYLPAELGAPSKQPTNYFCKTLTASDTSTHGGFSVPRRAAEKVFPPLDFSQQPPAQELIAKDLHDNDWKFRHIFRGQPKRHLLTTGWSVFVSAKRLVAGDSVIFIWNEKNQLLLGIRRANRPQTVMPSSVLSSDSMHLGLLAAAAHAAATNSRFTIFYNPRASPSEFIIPLAKYVKAVYHTRVSVGMRFRMLFETEESSVRRYMGTITGISDLDSTRWPNSHWRSVKVGWDESTAGERQPRVSLWEIEPLTTFPMYPSPFPLRLKRPWPTGFPSFHGLKEDDLGLNSQLMWLRGDGLDRGIQPLNFPGIGVAPWMQPRLDASMVGLQPEIYQAMAAAALQEMRTVDPAKAQAASLLQFQQSQNLSNRPATFMPPQMLQQPQPQPPQTFLQSDENQHLSHSQAQSQPTVLQQEIKHQTFNNQQQQQQQQQQQQQQQQSQQVFDHQQIPSPISTMSQFSSASQSQSQSLQTIPPLCRQQSFSDSNANHVTSPIISPLHSLLGSFPQDESSQLLNLPRTNPMIHSSTWPSKRAAVNPLLSSGNSQFVLSQGENMGTTQTNISQNAISLPPFPGRECSLDQGNADPQSNLLFGVNIEPSSLLMQNGMPNLRGICSDSDSTAIPFSSNYVNTAGTNFSANPTGTGTPSNCIEDSGFLQSPENTGQVNPPTRTFVKVYKSGSFGRSLDISKFSSYHQLRSELAHMFSLEGELEDPLRSGWQLVFVDRENDVLLLGDDPWPEFVNSVWCIKILSPQEVQEMGKRGLELLNSVPIQRLSNGSCDNYANRQESSRNLSTGITSVGSLEY 909
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 2995513 3001984 - XM_039026003.1 Bhi03g00112 28889
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bhi03g00112 909 Gene3D - 291 363 - -
Bhi03g00112 909 Pfam B3 DNA binding domain 127 228 IPR003340 GO:0003677
Bhi03g00112 909 SUPERFAMILY CAD & PB1 domains 767 850 - -
Bhi03g00112 909 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 1 887 IPR044835 GO:0003677|GO:0006355|GO:0009725
Bhi03g00112 909 MobiDBLite consensus disorder prediction 475 551 - -
Bhi03g00112 909 Gene3D - 125 228 IPR015300 -
Bhi03g00112 909 ProSiteProfiles B3 DNA-binding domain profile. 127 229 IPR003340 GO:0003677
Bhi03g00112 909 SUPERFAMILY DNA-binding pseudobarrel domain 112 256 IPR015300 -
Bhi03g00112 909 Pfam AUX/IAA family 766 864 IPR033389 -
Bhi03g00112 909 Gene3D - 772 864 - -
Bhi03g00112 909 Coils Coil 527 548 - -
Bhi03g00112 909 PANTHER AUXIN RESPONSE FACTOR 6 1 887 - -
Bhi03g00112 909 Pfam Auxin response factor 253 336 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Bhi03g00112 909 CDD B3_DNA 126 227 IPR003340 GO:0003677
Bhi03g00112 909 ProSiteProfiles PB1 domain profile. 775 859 IPR000270 GO:0005515
Bhi03g00112 909 MobiDBLite consensus disorder prediction 491 551 - -
Bhi03g00112 909 MobiDBLite consensus disorder prediction 559 578 - -
Bhi03g00112 909 SMART B3_2 127 229 IPR003340 GO:0003677
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Bhi03g00112 Bhi08g02023 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bhi03g00112 Bhi-Chr3:2995513 Bhi06g01557 Bhi-Chr6:45933087 1.30E-28 dispersed
Bhi06g01558 Bhi-Chr6:45940121 Bhi03g00112 Bhi-Chr3:2995513 8.22E-29 dispersed
Bhi01g02968 Bhi-Chr1:73686323 Bhi03g00112 Bhi-Chr3:2995513 1.83E-13 transposed
Bhi09g01446 Bhi-Chr9:36642402 Bhi03g00112 Bhi-Chr3:2995513 2.17E-14 transposed
Bhi03g00112 Bhi-Chr3:2995513 Bhi08g02023 Bhi-Chr8:58272146 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
521 PF02309 AUX_IAA 1.40E-07 CL0072 Bhi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bhi03g00112 - - csv:101210406 1661.74