Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bhi03g00154 GGAGAGTTACAGAACGAAAACACAAATATGCTCTTATTGGATTCTGAGCTTCCTCTGTCCCCTCTTCTCAGACTAAGAAGAAATCAAGAAGGAGAAAGAAGAAAAGACGACGAATAAACTACAAGAAAGAAAGCGCGCGCACGCACGCACACTCCTCAGTTGCAGCAGAAGATAATAGGAATTTGGGGGTGATACTGATAATTTAACCGACCCCCTTTTCCGCAATTCCCACTCTCCAGGTTTCATTTGGTGTACACTACTACCCCATGACTTCTTCTGTCCACGATTATTCTGATAATGCTGAGGCTGATGAGCAGCAAAAGTACTCTGAATCTCAGAATCATTCTTCATCAGTCATAAATGGACTAAATCAACCCAGCATCGCGACCCCAAATCAGTATGTAACATCTACTCAAATTGGGGCAGGACATGCTATGGCACCCGCTGCTTATCCATATCCAGATCCTTATTACAGAAGCATCTTTACTCCCTATGAGCCTCAACCATATCCTCCACAGCCCTATGGTGGGCAACCTATGGTCCATCTTCAGTTAATGGGAATTCAGCAAGCTGGGGTTCCTTTGCCAACAGATGCAGTTGAGGAGCCTGTTTTTGTCAATGCTAAACAGTATCATGGCATTTTACGACGTCGACAGTCCCGTGCAAAAGCTGAATCAGAAAATAAAGCTCTAAAGTCTAGGAAGCCATACTTGCATGAATCTCGACATCTGCATGCATTGAGGAGAGCTAGAGGTTGTGGTGGGCGGTTTCTCAAATCAAATAAAAATGAGAATCATCAAAATGAAGTGGCATCAGGTGATAAATCACAGCCAAATATAAATCTGAATTCTGATAGAAGTGATCTTGCTTCTTCAGAGAACTGATGTCTGAGGCATTGTTGGGTGAATGGTGAACAGCGCATTTCAACAATTGTAAGGAAATTGAGGTCCCAATGCCAGCTTCAGTTGCCTTAGTATTACTTCATCCTTGGTCTATACTAGCAGCATTATAGCATATAGGTTTTGGTAGCATGTTACTTAGGGAGGGTCCAAAATGTAGCAGGCAAAAGTATGCAAGTTTTAATAACATCGTAAATACTGAAGTGAGTTAGCTGATTGTTCTGTTTGAGTGGCGGTTGCATTAGGTTTGCAAATATTAGATTCACTGTTTTGTAGTGTTAGTTGCTATTTACGTTGCTCCCCACCTCAAAAATAAGTTCAGTGGTTGAATTGAAATGATGGAACTCGTATTGTAACATATTGGTCCTTGCAGTACTTTCTTATTTTCTTTTATTTTCTTTTCTGGGTTTTTAAATGGCTTTGTGTACTATCTTTTGCTGAGAAAAAGGTAAACACTTTTCCTTGGCCATTTTAGTTTGTGATGATCCCCAAGACCATATTAGCTGAAAAAGACAACAAATTTGTGTTTAAAAGTAGTCGTCCACTTAAAGTCCCTGGTTTTTAGGCCTAATATTTGAATTAGCTTGAACGGATTGGCACAGTGCATATTAAAGCTGATGAAGCTGAAACTATTATGGGAAGTTTTGTAATGGAAGGAGATGAAGTCGACAAGAGGTCAGGTCTGGGTTCCTATTGAATGTACGAAAGGAGTATACATTCGTAGTGTTTGGTCTTGTTGTAGGAAGTAAAGGAGTGTAGGCAAGTTGATACAGCATCTCCATAGTTTGATATCAGTCTTCAAAATTGCAGCAGAAAATAATAGAATCAATCTTCTATGGCTGGATATTTTGAACTTGTAAATAACGAGACAATGTAGTGCAACTGTTCTCATAACTTCCCCAACATCTTTTGTTTATTAAACGCTGCAGGAAAAAACCTGAACATCTTTTGGTAATGGTGTGCTGACATTTTTTTTTCCATGTTTTGCTTTATTTTTCGTCTTGTATTGTATTGTATCCTATGTCAATAACTTCTATAATTCAGTTAAGTTGCTCCTACCATGTA 1964 39.31 MTSSVHDYSDNAEADEQQKYSESQNHSSSVINGLNQPSIATPNQYVTSTQIGAGHAMAPAAYPYPDPYYRSIFTPYEPQPYPPQPYGGQPMVHLQLMGIQQAGVPLPTDAVEEPVFVNAKQYHGILRRRQSRAKAESENKALKSRKPYLHESRHLHALRRARGCGGRFLKSNKNENHQNEVASGDKSQPNINLNSDRSDLASSEN 205
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 3804248 3813685 - XM_039027234.1 Bhi03g00154 28931

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bhi03g00154 205 SMART cbf3 110 171 IPR001289 GO:0003700|GO:0006355
Bhi03g00154 205 PRINTS CCAAT-binding transcription factor subunit B signature 114 136 IPR001289 GO:0003700|GO:0006355
Bhi03g00154 205 PRINTS CCAAT-binding transcription factor subunit B signature 145 168 IPR001289 GO:0003700|GO:0006355
Bhi03g00154 205 PANTHER NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT A-7 1 186 - -
Bhi03g00154 205 PANTHER TRANSCRIPTION FACTOR NF-Y ALPHA-RELATED 1 186 IPR001289 GO:0003700|GO:0006355
Bhi03g00154 205 MobiDBLite consensus disorder prediction 171 205 - -
Bhi03g00154 205 Pfam CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B 113 168 IPR001289 GO:0003700|GO:0006355
Bhi03g00154 205 MobiDBLite consensus disorder prediction 1 38 - -
Bhi03g00154 205 Gene3D - 111 172 - -
Bhi03g00154 205 ProSiteProfiles NF-YA/HAP2 family profile. 111 171 IPR001289 GO:0003700|GO:0006355
Bhi03g00154 205 ProSitePatterns NF-YA/HAP2 subunit signature. 116 136 IPR018362 GO:0003677|GO:0016602
Bhi03g00154 205 MobiDBLite consensus disorder prediction 163 205 - -
Bhi03g00154 205 MobiDBLite consensus disorder prediction 21 38 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bhi03g00154 K08064 NFYA, HAP2; nuclear transcription factor Y, alpha - csv:101205549 360.533
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bhi03g00154 Bhi-Chr3:3804248 Bhi10g00302 Bhi-Chr10:6542622 6.43E-40 dispersed
Bhi10g00305 Bhi-Chr10:6542622 Bhi03g00154 Bhi-Chr3:3804248 1.55E-33 dispersed
Bhi03g00154 Bhi-Chr3:3804248 Bhi09g00646 Bhi-Chr9:13761457 2.18E-41 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Bhi10g00303 CCT,ECH 18 228 CCAAT-HAP2 Transcription Factor Family AT5G12840 55.0 4.2e-52 202.6
Bhi10g00306 . 18 228 CCAAT-HAP2 Transcription Factor Family AT5G12840 55.0 4.2e-52 202.6
Bhi10g00302 . 18 228 CCAAT-HAP2 Transcription Factor Family AT5G12840 55.0 4.2e-52 202.6
Bhi10g00304 . 18 228 CCAAT-HAP2 Transcription Factor Family AT5G12840 55.0 4.2e-52 202.6
Bhi10g00305 . 18 223 CCAAT-HAP2 Transcription Factor Family AT5G12840 53.2 2.5e-49 193.4
Bhi10g00303 CCT,ECH 103 340 CCAAT-HAP2 Transcription Factor Family AT3G20910 50.6 2.0e-47 187.2
Bhi10g00306 . 103 340 CCAAT-HAP2 Transcription Factor Family AT3G20910 50.6 2.0e-47 187.2
Bhi10g00302 . 103 340 CCAAT-HAP2 Transcription Factor Family AT3G20910 50.6 2.0e-47 187.2
Bhi10g00304 . 103 340 CCAAT-HAP2 Transcription Factor Family AT3G20910 50.6 2.0e-47 187.2
Bhi02g01538 CCT,ECH 58 231 CCAAT-HAP2 Transcription Factor Family AT3G20910 60.8 9.3e-45 178.3
Bhi03g00154 . 1 203 CCAAT-HAP2 Transcription Factor Family AT1G30500 55.2 7.9e-50 194.5
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004501 2 1 2 2 2 1 2 1 1 1 1 2 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 2 1 1 41
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
524 PF02045 CBFB_NFYA 4.20E-26 No_clan Bhi TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bhi03g00154 Bhi_Chr03 FPKM 4.067669 3.213632 3.289265 3.265979 6.466565 7.429698 6.31916 0.328802 0.18659 0.335202