Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bhi03g00154 GGAGAGTTACAGAACGAAAACACAAATATGCTCTTATTGGATTCTGAGCTTCCTCTGTCCCCTCTTCTCAGACTAAGAAGAAATCAAGAAGGAGAAAGAAGAAAAGACGACGAATAAACTACAAGAAAGAAAGCGCGCGCACGCACGCACACTCCTCAGTTGCAGCAGAAGATAATAGGAATTTGGGGGTGATACTGATAATTTAACCGACCCCCTTTTCCGCAATTCCCACTCTCCAGGTTTCATTTGGTGTACACTACTACCCCATGACTTCTTCTGTCCACGATTATTCTGATAATGCTGAGGCTGATGAGCAGCAAAAGTACTCTGAATCTCAGAATCATTCTTCATCAGTCATAAATGGACTAAATCAACCCAGCATCGCGACCCCAAATCAGTATGTAACATCTACTCAAATTGGGGCAGGACATGCTATGGCACCCGCTGCTTATCCATATCCAGATCCTTATTACAGAAGCATCTTTACTCCCTATGAGCCTCAACCATATCCTCCACAGCCCTATGGTGGGCAACCTATGGTCCATCTTCAGTTAATGGGAATTCAGCAAGCTGGGGTTCCTTTGCCAACAGATGCAGTTGAGGAGCCTGTTTTTGTCAATGCTAAACAGTATCATGGCATTTTACGACGTCGACAGTCCCGTGCAAAAGCTGAATCAGAAAATAAAGCTCTAAAGTCTAGGAAGCCATACTTGCATGAATCTCGACATCTGCATGCATTGAGGAGAGCTAGAGGTTGTGGTGGGCGGTTTCTCAAATCAAATAAAAATGAGAATCATCAAAATGAAGTGGCATCAGGTGATAAATCACAGCCAAATATAAATCTGAATTCTGATAGAAGTGATCTTGCTTCTTCAGAGAACTGATGTCTGAGGCATTGTTGGGTGAATGGTGAACAGCGCATTTCAACAATTGTAAGGAAATTGAGGTCCCAATGCCAGCTTCAGTTGCCTTAGTATTACTTCATCCTTGGTCTATACTAGCAGCATTATAGCATATAGGTTTTGGTAGCATGTTACTTAGGGAGGGTCCAAAATGTAGCAGGCAAAAGTATGCAAGTTTTAATAACATCGTAAATACTGAAGTGAGTTAGCTGATTGTTCTGTTTGAGTGGCGGTTGCATTAGGTTTGCAAATATTAGATTCACTGTTTTGTAGTGTTAGTTGCTATTTACGTTGCTCCCCACCTCAAAAATAAGTTCAGTGGTTGAATTGAAATGATGGAACTCGTATTGTAACATATTGGTCCTTGCAGTACTTTCTTATTTTCTTTTATTTTCTTTTCTGGGTTTTTAAATGGCTTTGTGTACTATCTTTTGCTGAGAAAAAGGTAAACACTTTTCCTTGGCCATTTTAGTTTGTGATGATCCCCAAGACCATATTAGCTGAAAAAGACAACAAATTTGTGTTTAAAAGTAGTCGTCCACTTAAAGTCCCTGGTTTTTAGGCCTAATATTTGAATTAGCTTGAACGGATTGGCACAGTGCATATTAAAGCTGATGAAGCTGAAACTATTATGGGAAGTTTTGTAATGGAAGGAGATGAAGTCGACAAGAGGTCAGGTCTGGGTTCCTATTGAATGTACGAAAGGAGTATACATTCGTAGTGTTTGGTCTTGTTGTAGGAAGTAAAGGAGTGTAGGCAAGTTGATACAGCATCTCCATAGTTTGATATCAGTCTTCAAAATTGCAGCAGAAAATAATAGAATCAATCTTCTATGGCTGGATATTTTGAACTTGTAAATAACGAGACAATGTAGTGCAACTGTTCTCATAACTTCCCCAACATCTTTTGTTTATTAAACGCTGCAGGAAAAAACCTGAACATCTTTTGGTAATGGTGTGCTGACATTTTTTTTTCCATGTTTTGCTTTATTTTTCGTCTTGTATTGTATTGTATCCTATGTCAATAACTTCTATAATTCAGTTAAGTTGCTCCTACCATGTA 1964 39.31 MTSSVHDYSDNAEADEQQKYSESQNHSSSVINGLNQPSIATPNQYVTSTQIGAGHAMAPAAYPYPDPYYRSIFTPYEPQPYPPQPYGGQPMVHLQLMGIQQAGVPLPTDAVEEPVFVNAKQYHGILRRRQSRAKAESENKALKSRKPYLHESRHLHALRRARGCGGRFLKSNKNENHQNEVASGDKSQPNINLNSDRSDLASSEN 205
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 3804248 3813685 - XM_039027234.1 Bhi03g00154 28931
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bhi03g00154 205 SMART cbf3 110 171 IPR001289 GO:0003700|GO:0006355
Bhi03g00154 205 PRINTS CCAAT-binding transcription factor subunit B signature 114 136 IPR001289 GO:0003700|GO:0006355
Bhi03g00154 205 PRINTS CCAAT-binding transcription factor subunit B signature 145 168 IPR001289 GO:0003700|GO:0006355
Bhi03g00154 205 PANTHER NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT A-7 1 186 - -
Bhi03g00154 205 PANTHER TRANSCRIPTION FACTOR NF-Y ALPHA-RELATED 1 186 IPR001289 GO:0003700|GO:0006355
Bhi03g00154 205 MobiDBLite consensus disorder prediction 171 205 - -
Bhi03g00154 205 Pfam CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B 113 168 IPR001289 GO:0003700|GO:0006355
Bhi03g00154 205 MobiDBLite consensus disorder prediction 1 38 - -
Bhi03g00154 205 Gene3D - 111 172 - -
Bhi03g00154 205 ProSiteProfiles NF-YA/HAP2 family profile. 111 171 IPR001289 GO:0003700|GO:0006355
Bhi03g00154 205 ProSitePatterns NF-YA/HAP2 subunit signature. 116 136 IPR018362 GO:0003677|GO:0016602
Bhi03g00154 205 MobiDBLite consensus disorder prediction 163 205 - -
Bhi03g00154 205 MobiDBLite consensus disorder prediction 21 38 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bhi03g00154 Bhi-Chr3:3804248 Bhi10g00302 Bhi-Chr10:6542622 6.43E-40 dispersed
Bhi10g00305 Bhi-Chr10:6542622 Bhi03g00154 Bhi-Chr3:3804248 1.55E-33 dispersed
Bhi03g00154 Bhi-Chr3:3804248 Bhi09g00646 Bhi-Chr9:13761457 2.18E-41 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
524 PF02045 CBFB_NFYA 4.20E-26 No_clan Bhi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bhi03g00154 K08064 - csv:101205549 360.533