Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bhi03g00226 AACCCCCTTTCCGGATAGAAGAAGGCCACGAACAAAACCCTCGATCTTCGTGATCTCTGTTCGTTTGATTCCCTCCAGTTCTCGTTTTTTCCCCAAAATCCTGTGCTTTACGAAGATCTCGTCTCGTTTCAGAATTTGAATTTAGAGCGGTACGGTGTGTGCTCTGGTTATGGGGAAGAAGAAGAGAGTTGTGTCTAAGATATGGTGTTACTATTGCGACCGAGAATTCGATGACGAAAAGATATTGGTGCAGCATCAGAAGGCCGAACACTTCAAGTGCCATGTCTGTCACGAGAAGCTTTCTACTGCCGGCGGTATGGTCATCCACGTTCTTCACGTCCACAAAGAGTCAGTCACCAAAGTTCCTAATGCAAAACCAGGTAGAGAAGCAACAGATATTGAAATATATGGAATGCAAGGAATTCCTCCTGATGTCTTGGCAGCACACTATGGAGAGGACGACATTGTTGACAAATTGAAGATACCAATGGCAAGTGTCATTACGAAGTTCTTCATTGCATCATTGTTTATGTGGATAACTCCTATCGCATTGTTATATGGTTTTAACCATAATTTGATTCCTGGTTCAACACAATTAAATCCGCATTCTCTTACACTCTTGAGTGGATTCCTTGCTGTCATATCAGTCAACGTTGTCATTGCTATTTATATTATAATGGCAATGAAAGAACCTTCTAGTAAACATGAACCGGATCCTGCATTTCTTGTCGAAGCAAAAGCTAGTATAAACCAATCTAATGGGAAATTAAATGAACCCTCACAAGCTCACAATAAGAAGGAAGAATAGGCCATGAGAGAGGGAGGCTTTGATTAGGAACAATCTCAAGGCTAATCTCCCAGTATTTTTTATGATAATTAGTCTCATGTGTGGTCAGATTGTCTGCTTGTCAATTGAGACTTGGGAAGAAAGAAAGTTCTGTTTCTTCACTTGTTTTGTTTTGTGAATATGGACTGCATTTAGATTTGATACTTTTGTTCCACTGGTGATGTTCTTCACTATTTGCTATGAACTCTTTGCTTCTACTGTCATAACGTGTAGAGATGTAATAGCCTTTGGGGAGAATTAAAAGAAAATTTAGATTATTGTA 1109 39.68 MGKKKRVVSKIWCYYCDREFDDEKILVQHQKAEHFKCHVCHEKLSTAGGMVIHVLHVHKESVTKVPNAKPGREATDIEIYGMQGIPPDVLAAHYGEDDIVDKLKIPMASVITKFFIASLFMWITPIALLYGFNHNLIPGSTQLNPHSLTLLSGFLAVISVNVVIAIYIIMAMKEPSSKHEPDPAFLVEAKASINQSNGKLNEPSQAHNKKEE 212
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 5017639 5028608 - XM_039026849.1 Bhi03g00226 29003
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bhi03g00226 212 SMART c2h2final6 35 58 IPR013087 -
Bhi03g00226 212 SMART c2h2final6 11 34 IPR013087 -
Bhi03g00226 212 Pfam VMA21-like domain 109 172 IPR019013 GO:0070072
Bhi03g00226 212 ProSiteProfiles Zinc finger BED-type profile. 6 65 IPR003656 GO:0003677
Bhi03g00226 212 Hamap Vacuolar ATPase assembly integral membrane protein <gene_name> [VMA21]. 107 193 IPR019013 GO:0070072
Bhi03g00226 212 ProSitePatterns Zinc finger C2H2 type domain signature. 37 58 IPR013087 -
Bhi03g00226 212 PANTHER BUB3-INTERACTING AND GLEBS MOTIF-CONTAINING PROTEIN ZNF207 1 98 - -
Bhi03g00226 212 PANTHER ZINC FINGER PROTEIN 207 1 98 - -
Bhi03g00226 212 ProSitePatterns Zinc finger C2H2 type domain signature. 13 34 IPR013087 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bhi03g00216 Bhi-Chr3:4897771 Bhi03g00226 Bhi-Chr3:5017639 1.08E-65 dispersed
Bhi03g00217 Bhi-Chr3:4897771 Bhi03g00226 Bhi-Chr3:5017639 1.61E-12 dispersed
Bhi03g00225 Bhi-Chr3:5017639 Bhi03g00226 Bhi-Chr3:5017639 2.73E-119 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
530 PF09446 VMA21 3.80E-20 No_clan Bhi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bhi03g00226 - - bhj:120073929 434.106