Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bhi03g00330 AAAAAGGATGACGGCCGACAAGATTTTCGTAATGTACAGATGTCGCAAAGGAGTGCCGGTGAAATACCAATTTTGTAACGTTCTGTTTCCTTCAATAATTCTATGGTTCGTTCAATAATCGACAAATTACACCTGAAATTTTCACTCAATTCATCTCTCTCTTCAATCGTCTCCTCCGCCATTTCTCGATCAAAGAGTTCGTTCCCATGTCGCTGTAGAGAAACCCACCAACCCTTTAATGGGGACCGTACGATCTTCCTTCTCATGAGCTGTTGCGTTGGTTGAGCCTCTGATTGAGGGCGGGAAAGAGTATTTTAAGGGTTTTCTGTTGTAGGGTTTTTTTAAAAAACTATTTTCATTGGGAATTTTTGGGAGAAAAAAGGCTGGTGATGGGCCATGGCCAATCCATATTGCAACAACCACTTTTATACCCTCAGGACTTGCCTTCATCTTTACTACTACGACTTCACAAAGCTGGACCAGTTGTCTACTGCCTTCTCTTTCAAAAATCGGGAGTGGCTATGCATTAGAAGTTTTGAAAGGTCTCTCCATTGATTTCTTCTCCAGCTTTTTCTGTGCTTGTGTAGTATATAAGCGCTTTATTAGCGGAAATGGTTTCTGGACGCTGGTTTAAGGCAGTAATTCGCTTAAAGAAAGTGAAAACCAGCAGTTCAAAACAAACTAAGGAGAAATTGAATGATTTGCAAAAAGATTCCCCAAGGTTTAAAAATGGTGGTACTAATGGGAACGGTAAGTCTCTTGGGATGCCAATTGAAGATGTAGCTGCAGTTCGGATTCAGACAGCATACCGAGCATATTGTGCCAGGAAAAATTTACGTCGCTTGAAAGGGGCCTTCAGACTGCAGAATCTGACTCAAGGCAATTCCGTTAGAAAGCATGCTACATCTACATTAGGCTATCTTCATTCCTGGAGCAATATACAGGCTCAAATTAAGGCTCGTCGACTTTGTATGGTGACAGAGGGACGACAGAGACAAAAAAGATTAGAAAATCAACGAAAACTTGAGGCTAAGCTTCATGATATAGAGGTGGCGTGGTGTGGGGGTGCAGACTCCATGGACGGGATTCTTTCTAGGATACATGAGAGAGAAGAAGCAGCTGTTAAACGCGAGCGTGCTATGGCATATGCATTCTCACATCAGTGGAGAGCAAACTCCAATGAGATGTATGGGTTGGGTAAGGACGAACTTGGTAAAGCTGATTGGGGTTGGAGCTGGAAAGAACGATGGATAGCTGCTCGTCCGTGGGAAAGCCGTGTACCATCTCAGTTCGTTAGTCCAAAGAAATCTACAATTAGGCAATCGAGCAAAGTCAGTCAGAGAAATTCACCATCCCCTAAAGCACGAGTTTCGATCAAACCACCTTCCCCAAATGGGAAATCAACTTCAAAGGCTCGGAGGTTGTCTTATCCAGCAACCGAGAAACTGACTATGGAAGAAAAAGGCGTCAAAGAAAGCATTAAAAATGACAAAGGGAACACTACGAAAGAAGAAACAACGTCCTAATCGATGCCATTTATAGAATGCAAAACGTGTTCATATTTTTATCAAAGAAAGCCAGAGAAAAAAAATAAAAGATGTAGAAGCCATTTATTTTCTGTATGTCATTTCTGATGATGTTCATTCATTGAGTGGTGTGAGGTAATGTATTATTGGCATGCAGTCTGACCCCATGTCATTATTTCTTACATTTCATTTCCTTTTCCTTGTTATGTATATTTGAAAGAAAAAGAAAGACAGTATTACTTAAGTTATAATGTATATGATACGAACAGTGTTAATGATTT 1807 40.79 MVSGRWFKAVIRLKKVKTSSSKQTKEKLNDLQKDSPRFKNGGTNGNGKSLGMPIEDVAAVRIQTAYRAYCARKNLRRLKGAFRLQNLTQGNSVRKHATSTLGYLHSWSNIQAQIKARRLCMVTEGRQRQKRLENQRKLEAKLHDIEVAWCGGADSMDGILSRIHEREEAAVKRERAMAYAFSHQWRANSNEMYGLGKDELGKADWGWSWKERWIAARPWESRVPSQFVSPKKSTIRQSSKVSQRNSPSPKARVSIKPPSPNGKSTSKARRLSYPATEKLTMEEKGVKESIKNDKGNTTKEETTS 304
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 6963887 6969159 - XM_039025616.1 Bhi03g00330 29107

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bhi03g00330 304 MobiDBLite consensus disorder prediction 226 271 - -
Bhi03g00330 304 PANTHER IQ-DOMAIN 5-RELATED 1 279 - -
Bhi03g00330 304 MobiDBLite consensus disorder prediction 18 50 - -
Bhi03g00330 304 PANTHER IQ-DOMAIN 9 1 279 - -
Bhi03g00330 304 MobiDBLite consensus disorder prediction 19 34 - -
Bhi03g00330 304 ProSiteProfiles IQ motif profile. 55 83 IPR000048 GO:0005515
Bhi03g00330 304 MobiDBLite consensus disorder prediction 224 304 - -
Bhi03g00330 304 Gene3D - 6 101 - -
Bhi03g00330 304 MobiDBLite consensus disorder prediction 276 304 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bhi03g00330 - - - csv:101220729 536.569
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bhi03g00328 Bhi-Chr3:6963887 Bhi03g00330 Bhi-Chr3:6963887 0 dispersed
Bhi03g00330 Bhi-Chr3:6963887 Bhi02g01385 Bhi-Chr2:36091039 8.37E-42 dispersed
Bhi03g00329 Bhi-Chr3:6963887 Bhi03g00330 Bhi-Chr3:6963887 0 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi10g183 . . Bda02g00019 . . Bpe01g00879 . . . . . Cma07g00203 . Car07g00168 . . . Bhi03g00330 . . . . . . Cla01g02298 Cam01g2409 Cec04g2056 . Clacu01g2430 Cmu01g2294 Cre04g1962 Cone1ag0191 Cone5ag1677 . . Lsi01g00265 Csa06g03677 . Cme08g00247 . . . . . . . Bma11g01010 . . Cmo07g00202 . . . . Cpe19g01052 . . . . . . . . . . . . . . . . . Chy02g00253 .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Bhi06g00669 . 1 479 IQD Protein Family AT3G52290 54.2 5.3e-102 369.0
Bhi06g00668 . 1 479 IQD Protein Family AT3G52290 54.2 5.3e-102 369.0
Bhi02g01384 . 1 408 IQD Protein Family AT3G22190 57.5 1.5e-96 350.9
Bhi02g01383 . 1 408 IQD Protein Family AT3G22190 57.5 1.5e-96 350.9
Bhi02g01385 . 1 408 IQD Protein Family AT3G22190 57.5 1.5e-96 350.9
Bhi09g03139 . 1 438 IQD Protein Family AT2G26180 61.6 9.3e-120 427.9
Bhi03g00330 . 1 274 IQD Protein Family AT2G33990 53.6 1.2e-61 234.2
Bhi03g00327 . 1 274 IQD Protein Family AT2G33990 53.6 1.2e-61 234.2
Bhi03g00326 . 1 274 IQD Protein Family AT2G33990 53.6 1.2e-61 234.2
Bhi03g00329 . 1 274 IQD Protein Family AT2G33990 53.6 1.2e-61 234.2
Bhi03g00328 . 1 274 IQD Protein Family AT2G33990 53.6 1.2e-61 234.2
Bhi03g00324 . 4 223 IQD Protein Family AT2G33990 57.6 5.8e-59 225.3
Bhi03g00323 . 4 223 IQD Protein Family AT2G33990 57.6 5.8e-59 225.3
Bhi03g00325 . 4 223 IQD Protein Family AT2G33990 57.6 5.8e-59 225.3
Bhi01g03276 . 83 266 IQD Protein Family AT2G33990 53.5 1.6e-48 190.7
Bhi01g03276 . 86 259 IQD Protein Family AT3G15050 62.7 8.5e-55 211.5
Bhi03g00330 . 56 232 IQD Protein Family AT3G15050 58.2 9.4e-54 208.0
Bhi03g00327 . 56 232 IQD Protein Family AT3G15050 58.2 9.4e-54 208.0
Bhi03g00326 . 56 232 IQD Protein Family AT3G15050 58.2 9.4e-54 208.0
Bhi03g00329 . 56 232 IQD Protein Family AT3G15050 58.2 9.4e-54 208.0
Bhi03g00328 . 56 232 IQD Protein Family AT3G15050 58.2 9.4e-54 208.0
Bhi03g00324 . 5 181 IQD Protein Family AT3G15050 58.2 9.4e-54 208.0
Bhi03g00323 . 5 181 IQD Protein Family AT3G15050 58.2 9.4e-54 208.0
Bhi03g00325 . 5 181 IQD Protein Family AT3G15050 58.2 9.4e-54 208.0
Bhi12g01121 . 124 476 IQD Protein Family AT5G13460 52.1 9.4e-78 288.5
Bhi12g02233 . 1 508 IQD Protein Family AT4G00820 51.3 2.8e-113 406.8
Bhi12g02232 . 1 509 IQD Protein Family AT4G00820 51.2 3.7e-113 406.4
Bhi01g00618 . 1 466 IQD Protein Family AT4G00820 50.5 1.1e-104 378.3
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007113 1 8 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 0 1 0 2 1 2 37
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bhi03g00330 Bhi_Chr03 FPKM 0.838802 0.0 0.0 0.0 0.0 0.0 0.0 0.414332 0.60106 0.378821