Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bhi03g00342 GGTATTGAGAGTGAGAGTCAAATATCATCATATCATAGGCAAACAAAAAGGCATTTCATGGCTTCATCAAACAGACATTGGCCTAGCATGTTCAAGTCCAAACCTTGCAATTCTCACCACCAATGGCAACATGATATCAATACTAATCTTTCTTCTTCCACTGCCACTACCTGCCTCAGATCTGCCCCTTACACTACAGTTGGTGGGTGTGAAGAGAGAAGTCCAGAGCCAAAACCAAGATGGAATCCAAAACCTGAACAAATTAGGATTCTTGAAGCAATTTTCAATTCTGGGATGGTGAATCCACCTAGAGATGAAATTAGAAAAATTAGAGCTCAATTGCAAGAATATGGACAAGTTGGTGATGCCAATGTTTTTTATTGGTTCCAAAACAGAAAATCCAGAAGCAAAAACAAACTCCGCCATATCCAAAACTCTAAATCCAATCATAATTCCCAAACCGCCACAGCCACAACCACCGCCATCGTCTCCATCGCCGCGACCACCACCACCACTTGTTCTTCCTCTTCTTCCTCTGACAAATCTTCTCCCAAAAAACCTCCCATTAGGACTCCCACCTCCAACAATTCGGTGACTCAGAACTACCTTCAACAACCCACCAACGACGTCTTGCCTGAACCCTTTTTCTTCCCGGTGTCGCAGACCGGGAGTGGCGGTGGCAGCGGAAGCTGTAATTTGAGTCAAGGGTTTTGCTTCTCAGAGCTGTGCAGTGTAGTTCAGCAAGTTCCTGAACATGGAGTTGGGCCTTGCACAAGCCTGTTGTTGAGTGAAATTATGAGCCCACAAACTGAGGACTTAAAGAAAGATTTGGATCAAGACAAGATTAATATGGTGAAGTTAGAGCCCCAGTTTATGAATTTTCATCCTTGTTTGACTTCCTCTACTACTGATCACACTCTTCCTCAAACCACTATTTCCACCCCTCTCACCACTCTTCCATCTCCTACCAATGCAATTCCTCAAGGTGTAGGTGAAGTTTGTGGAGTAGGTCAAAGCTGTGTAGGGAAATCAACGGTGTTCATCAATGGTGTGGCGTTCGAGGTGGCTTCTGGACCGTTCAATGTACGAGAGGCTTTTGGTAATGAAGCCGTTTTGATTCACTCAAATGGTCAGCCTGTTCTCACCAATGACTGGGGTCTCACTCTCCATTCACTCCAACATGGTTCTTACTATTATCTGGTTAGCCCCTTTTCATTTCCTTCTAATCCATCTTAATTCAAAGTAAAAAAAAGGTTCAATTTTTTATTAAAAATGCGGAGGATTACATATTTTTTAACAAAGAACTAGAGGTTGAGAGATCAATAGATGGACACATCCACATCGCCTCTCATCACGTCATAGTTTTAAAAGCGTTAAAATATTAGTGACATCAAAACATGTCAGTT 1406 42.6 MASSNRHWPSMFKSKPCNSHHQWQHDINTNLSSSTATTCLRSAPYTTVGGCEERSPEPKPRWNPKPEQIRILEAIFNSGMVNPPRDEIRKIRAQLQEYGQVGDANVFYWFQNRKSRSKNKLRHIQNSKSNHNSQTATATTTAIVSIAATTTTTCSSSSSSDKSSPKKPPIRTPTSNNSVTQNYLQQPTNDVLPEPFFFPVSQTGSGGGSGSCNLSQGFCFSELCSVVQQVPEHGVGPCTSLLLSEIMSPQTEDLKKDLDQDKINMVKLEPQFMNFHPCLTSSTTDHTLPQTTISTPLTTLPSPTNAIPQGVGEVCGVGQSCVGKSTVFINGVAFEVASGPFNVREAFGNEAVLIHSNGQPVLTNDWGLTLHSLQHGSYYYLVSPFSFPSNPS 392
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 7159426 7161323 + XM_039027480.1 Bhi03g00342 29119

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bhi03g00342 392 PANTHER WUSCHEL-RELATED HOMEOBOX 9 1 384 - -
Bhi03g00342 392 SMART HOX_1 57 124 IPR001356 GO:0003677
Bhi03g00342 392 SUPERFAMILY Homeodomain-like 55 122 IPR009057 -
Bhi03g00342 392 ProSiteProfiles 'Homeobox' domain profile. 55 120 IPR001356 GO:0003677
Bhi03g00342 392 MobiDBLite consensus disorder prediction 153 181 - -
Bhi03g00342 392 PANTHER WUSCHEL-RELATED HOMEOBOX 9 1 384 IPR044557 GO:0003700|GO:0050793
Bhi03g00342 392 CDD homeodomain 58 120 IPR001356 GO:0003677
Bhi03g00342 392 Pfam Homeodomain 59 119 IPR001356 GO:0003677
Bhi03g00342 392 Gene3D - 59 125 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bhi03g00342 - - - bhj:120074379 733.021
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bhi03g00342 Bhi-Chr3:7159426 Bhi11g02705 Bhi-Chr11:72529669 2.04E-16 dispersed
Bhi03g00341 Bhi-Chr3:7159426 Bhi03g00342 Bhi-Chr3:7159426 0 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi10g165 . . Bda02g00504 . . Bpe01g00455 . . . . Cma03g01305 Cma07g00209 Car03g01165 Car07g00176 . . Cpe10g00163 Bhi03g00342 . . . . . . Cla01g02289 Cam01g2401 Cec04g2047 Cco04g2125 Clacu01g2422 Cmu01g2286 Cre04g1954 . . Cone6ag0982 Cone9ag0982 Lsi01g00272 Csa06g03668 . Cme08g00256 . Blo14g00416 . . . . . . . Cmo03g01301 Cmo07g00209 . . . . Cpe19g01046 . . . . . . . . . . . . . . . . . Chy02g00262 .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Bhi08g01290 CCT,ECH 1 198 Wox Gene Family AT3G18010 54.3 5.2e-47 186.0
Bhi02g00135 CCT,ECH 1 165 Wox Gene Family AT3G18010 54.4 4.2e-41 166.4
Bhi11g02705 . 18 242 Wox Gene Family AT3G03660 52.6 5.5e-50 195.7
Bhi11g00265 . 1 275 Wox Gene Family AT4G35550 50.3 7.4e-70 261.5
Bhi11g00264 . 1 276 Wox Gene Family AT4G35550 50.2 9.7e-70 261.2
Bhi11g00266 . 1 276 Wox Gene Family AT4G35550 50.2 9.7e-70 261.2
Bhi09g02871 . 101 290 Wox Gene Family AT4G35550 57.4 1.1e-57 221.1
Bhi04g00375 . 5 168 Wox Gene Family AT1G46480 62.2 1.0e-49 194.1
Bhi03g00342 . 1 388 Wox Gene Family AT2G33880 50.1 2.5e-66 250.4
Bhi08g01290 CCT,ECH 1 198 Wox Gene Family AT3G18010 54.3 5.2e-47 186.0
Bhi02g00135 CCT,ECH 1 165 Wox Gene Family AT3G18010 54.4 4.2e-41 166.4
Bhi04g00375 . 5 168 Wox Gene Family AT1G46480 62.2 1.0e-49 194.1
Bhi03g00342 . 1 388 Wox Gene Family AT2G33880 50.1 2.5e-66 250.4
Bhi11g02705 . 18 242 Wox Gene Family AT3G03660 52.6 5.5e-50 195.7
Bhi11g00265 . 1 275 Wox Gene Family AT4G35550 50.3 7.4e-70 261.5
Bhi11g00264 . 1 276 Wox Gene Family AT4G35550 50.2 9.7e-70 261.2
Bhi11g00266 . 1 276 Wox Gene Family AT4G35550 50.2 9.7e-70 261.2
Bhi09g02871 . 101 290 Wox Gene Family AT4G35550 57.4 1.1e-57 221.1
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008426 1 2 1 0 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 1 1 1 35
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
549 PF00046 Homeodomain 1.40E-14 CL0123 Bhi TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bhi03g00342 Bhi_Chr03 FPKM 0.099098 0.0 0.0 0.0 0.0 0.0 0.0 1.738052 2.11185 1.854738