Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bhi03g00348 AAAAAGTGTCATTTAATATATATTTAGGGAATTTATGTGTTTTGTAAAGAGGCGGTGGGAAAGAAGACGAAAATGCTTACAGAGCTCTCTCCAAAGCAAAAATCATTCGTAACTGTGTCCTTGCACTTTCTTGCTCCATATTGTGGGAGGTTCAAGCCCTGTTCAGAACTAGGGCTTGCCATTCACCTGCTACCAATTTCGCTGCGAGTTCCTTGGGGCTAGGAGAAAAGTTTGAGTTCTGTAATGGGAAAGCATTCGAAGACCAGTTGCAAGTCGGCCTCCCACAAGCTATTTAAGGATAAGGCAAAGAACCGGGTTGATGATCTGCAAAGTATATTTGTAGATTTGCAGTATGCAAGGAAGGAGAGCCGCACAGTTGATGTCACAGTTCTCGAGGAACAAGTTCATCAGATGCTTCGTGAGTGGAAAGCTGAGCTGAACGAGCCCTCTCCAGCCTCCTCTTTGCAACAAGGTGGAAGTCTTGGTTCATTTTCATCGGACATTTGTCGATTGTTGCAACTTTGCGAGGAGGAGGATGATGCTTCTAGTCCATTAGCTGCTCCTAAGCCCGAACCCAATGAACAAAATTTGCAGGTTGGAGATACTATGGCACTTCAAGAGGGATATAATGTGAATCACGTACACCAAGAACCAAGCTTCCCTCTAGTTGATCAATGCAAGAACTCCCCTTCAGGAGTTCATGGTATGGCTATGAATAACTTGGAAGGACCTACACCTTTGGAGTGTCATCAGTTTGATTTACATCAAGGCATTGAGCACAACTTTTACTCTATCCTTAATGGTAGAGGATTGTGTGGGGAGGGTGCAATTCCTCATGTTTCTAGCTACTGTCCCAGCATTTGCCCTCCACCTGCTGCTTTTTTAGGCCCAAAATGTGCACTTTGGGATTGCCCACGACCTGCCCAAGGGATGGATTGGTGTGAGGACTACTGTAGCAGCTTTCATGCTGCCTTAGCATTGAATGAAGGCCCTCCTGGAATGGGTCCAGTTTTACGACCTGGTGGAATTGGTCTGAAGGATGGTTTGCTTTTTGCTGCTCTTAGTGCAAAGGCACAAGGGAAAGATGTTGGTATCCCTGAATGTGAGGGAGCTGCCACGGCAAAATCCCCATGGAATGCCCCTGAGCTTTTTGATCTGGCAATATTGGAGGGTGAGATGATTAGGGAGTGGCTTTTCTTTGATAAGCCTCGTAGAGCTTTTGAGAGTGGGAATAGAAAGCAGAGGTCACTGCCTGATTACAGTGGACGTGGTTGGCACGAGTCAAGAAAGCAAGTGATGAATGAGTTTGGAGGGTTGAAAAGATCTTATTACATGGATCCTCAGCCATTGAACCACTTTGAGTGGCATCTTTATGAGTATGAAATTAATAAATATGATGCCTGCGCTTTGTATAGATTGGAGCTGAAACTTGTCGATGGGAAAAAAGGTTCCAAGGCAAAGGTATCTAATGATTCAGTTGCTGATTTACAGAGGCAAATGGGGAGATTGACTGCTGAATTTCCTGATAATAAACGCTTTGTTAAGGGGAGGACCAGAATTAACACAAAAGTTGGTCTTGGAAATGTTTACCCCTCAGCAAATAGAGTCATGCCGCCCAACGGAACATATGACTATATGCTTCATGCACAATATGATTACCTTGTGGAGAATTTGAGTGAATATTACCTTACATAGTTAAGAAGCTCAGTCGTCGAATGAATTGCTTGCTCTGATGGTTTCCATCGGAATATGATGGGATCGAGTTTACGGTTCATTCTTTCAGAATTTGGTTTTTCTTTTTGGCCTCAAATAACATAAATAACTCTTTTTTTTCTTTCTTTTTTCTCTCATGGTATACTATCCGATACTCATCTCATGGGAGCTGCAACGGATACACCTTGATATGGAGCTTCTAACTTCTGGAAACGGTAAGGCCGGTTGTTTCCCTAATATTTTGGGTTACAATTTGCAATTGGTATATTCTAGAGGGAGATTAGTCACCTGAAACTCAGCTGAAGCCTAAGTAGTGATGTATATTTGTTTCTGCTGGCGTTACACAAACTCCAATAATGGTTTAGGGCGTCTGGATTTCGATGAAATGAAAACCGCTTACATTATGTTATGTTATGTATGCGGATAATAGTAGTTTTCATTTTATTTGCCGTCAATTGTCAACATACACATCTTGAGTAATCTTTTCGGTCATCTCTCAAGATATTGAAATGTATATTGCTCGAAGGTTACAACCTTGTTAACCATTGTCAGAAATGTAGATTTGCCGAATTGTTTCATGTTGAATTTCATCCGTTATCCTTTCATTGATA 2324 42.13 MGKHSKTSCKSASHKLFKDKAKNRVDDLQSIFVDLQYARKESRTVDVTVLEEQVHQMLREWKAELNEPSPASSLQQGGSLGSFSSDICRLLQLCEEEDDASSPLAAPKPEPNEQNLQVGDTMALQEGYNVNHVHQEPSFPLVDQCKNSPSGVHGMAMNNLEGPTPLECHQFDLHQGIEHNFYSILNGRGLCGEGAIPHVSSYCPSICPPPAAFLGPKCALWDCPRPAQGMDWCEDYCSSFHAALALNEGPPGMGPVLRPGGIGLKDGLLFAALSAKAQGKDVGIPECEGAATAKSPWNAPELFDLAILEGEMIREWLFFDKPRRAFESGNRKQRSLPDYSGRGWHESRKQVMNEFGGLKRSYYMDPQPLNHFEWHLYEYEINKYDACALYRLELKLVDGKKGSKAKVSNDSVADLQRQMGRLTAEFPDNKRFVKGRTRINTKVGLGNVYPSANRVMPPNGTYDYMLHAQYDYLVENLSEYYLT 483
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 7262680 7266688 - XM_039026636.1 Bhi03g00348 29125

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bhi03g00348 483 PANTHER TRANSCRIPTION FACTOR VOZ1 1 483 IPR039277 GO:0006355|GO:0048578
Bhi03g00348 483 PANTHER TRANSCRIPTION FACTOR VOZ1 1 483 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bhi03g00348 - - - csv:101219536 970.304
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bhi03g00348 Bhi-Chr3:7262680 Bhi10g01369 Bhi-Chr10:32859100 0 dispersed
Bhi03g00348 Bhi-Chr3:7262680 Bhi03g00349 Bhi-Chr3:7262680 0 tandem
Bhi10g01368 Bhi-Chr10:32859100 Bhi03g00348 Bhi-Chr3:7262680 0 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Bhi03g00349 . 2 482 VOZ-9 Transcription Factor Family AT1G28520 72.3 1.1e-201 700.3
Bhi03g00348 . 2 482 VOZ-9 Transcription Factor Family AT1G28520 72.3 1.1e-201 700.3
Bhi10g01369 . 6 463 VOZ-9 Transcription Factor Family AT1G28520 55.8 3.5e-134 476.1
Bhi10g01368 . 6 463 VOZ-9 Transcription Factor Family AT1G28520 55.8 3.5e-134 476.1
Bhi03g00349 . 27 422 VOZ-9 Transcription Factor Family AT2G42400 50.5 3.8e-103 372.9
Bhi03g00348 . 27 422 VOZ-9 Transcription Factor Family AT2G42400 50.5 3.8e-103 372.9
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004233 2 2 2 2 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 2 2 2 43
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
550 None None None None Bhi TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bhi03g00348 Bhi_Chr03 FPKM 25.729349 27.084824 20.274666 20.003809 19.942844 15.489822 20.714846 32.199261 31.74272 33.279793