Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bhi03g00520 GGGTATGTGTTTTGTTGGTTCAATCTGAGAAGAAAAATGGATTTAGATAGAACATAGGGAGCCTTTCTCTTTCTCTTTCTCTCTCTCTTTCTCTTTCTCTGTAATGGAAGTCTATGGTGTTGGAGCATCCAAAACCTCATAAACCCTCAAAGAACTGTTAGATTTCTTATAGAAAAAGAGAAAAAACAAAGGTGTGGGCTTTAATGGCGGCTCCATATCCGGATGATTTCAAGTGTCCTATTTCTCTGGAGATAATGTCGGACCCTGTAATACTCTCCTCCGGCCACACCTTTGATCGTTCTTCAATCCAACGATGGCTCGACGCCGGTCACCGGACTTGCCCAATCACCCAATTGCCCCTTCCTCAAAACCCTTCTCTAATCCCTAACCATGCCCTCCGAAGCTTAATTTCAAATTTCAACCCTGTTTCCCTTTCCAAGCCATTTCTCCCTCATCCGCCGCCTCAAACCCTAATCTCGATTCTCATCTCTCCTTCTTCCTCTCTCGATTCCAAGCTCGATTGCCTCAATCAACTCGCCAGGGTTTCAAAGCGTGATTCCGCTATGCGTCGAAGATTGACCGAGTCCGGTGCTGTCTCGGCCGTTCTTAAATGTGTCGGTTCTGACGATCCCAGCCTCCAAGAGAAGGCTCTCTCGCTTTTGCTTAATCTTAGTTTGGACGATGATAACAAAGTGGGTTTGGTTGCAGAGGGAGCTATTGGCCTCACCGTGGCTGCTCTTCAAGCTAGGTCCGCCGATTGCAGAGCCGTGGCGGCCACGATGCTGACGAGCTTGGCGGTTGTGGAGGTAAACAAAGCTACAATTGGGGCATATCCCTATGCGGTTCGTTCTCTGGTTTATTTATTACGGAACGGCAACAACAGAGAGCAGAAGGAAGCTGCAACTGCGCTTTACGCCATTTGTTCATTCCCCGGAAACCGTGTGCGGGCTGTGGAATGTGGGGCTGTTCCTATTTTGCTTAAAATTGCAAATTCTGGGCTGGATAGAGCAGTGGAAGTTCTGGGGGTTTTGGCTAAGTGCAGGGAAGGTCGAGAAGAGATGCAGCGGTTCAAGGGATGTGTGGAGATTTTGGGTTGTGTTTTGAGAAATGGAGGTCCAAGAGGAGTTCAATATGCTCTTCTAACTCTGGCTTCCCTTTGTTGTCATTGCGAGCGACTGTGCGTGGAGGCCAGAAGAGAAGGCGTTTTGGGAATCTGTATGACATTGATTGATGATGATAATGAAAAGATCAGAGCAAATGCTGCAAATTTGATTCATATACTGCGCGGAAACAACCCATGAGAAGAAGGAATCAAATCCGATTCGTTTGCAGTCAGACGATTGGTGGTTTGGCTTATGAATTGTGATGTCTTATGAGTATGACCAAGGGATTTTGCTGTGGCCTAATGTCGATGCCTCATTCTCCTTACCGAGGTGAGACCAATTTCTTCTCGATTATGGGTATCTACTTTTTCCCCTTTTTTTGGTTGGATAGTTTCTGTACAAAAAAATATATTAGAATCTGGGAAGATCATGGTTCTTTTTCTTCTTTTTTCTTTTTTAATATTTATATATATATATATATGATGTAAATTGAAATAAAGAACAACAGAGTCAATCAAGCACTGGAGGAGGTGTTCTTCTTGGTTTCAGATTGGTTTATAGTTTATACTGAGAAAATTTTCCAATTTGTTGATCAGTATTGTTATTGGCTTCCATTTATGTAAGTTTCTTCTTTTGACTCAAA 1746 43.81 MAAPYPDDFKCPISLEIMSDPVILSSGHTFDRSSIQRWLDAGHRTCPITQLPLPQNPSLIPNHALRSLISNFNPVSLSKPFLPHPPPQTLISILISPSSSLDSKLDCLNQLARVSKRDSAMRRRLTESGAVSAVLKCVGSDDPSLQEKALSLLLNLSLDDDNKVGLVAEGAIGLTVAALQARSADCRAVAATMLTSLAVVEVNKATIGAYPYAVRSLVYLLRNGNNREQKEAATALYAICSFPGNRVRAVECGAVPILLKIANSGLDRAVEVLGVLAKCREGREEMQRFKGCVEILGCVLRNGGPRGVQYALLTLASLCCHCERLCVEARREGVLGICMTLIDDDNEKIRANAANLIHILRGNNP 365
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 10043410 10045155 + XM_039027558.1 Bhi03g00520 29297
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bhi03g00520 365 SUPERFAMILY RING/U-box 3 72 - -
Bhi03g00520 365 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 5 76 IPR013083 -
Bhi03g00520 365 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 8 1 361 - -
Bhi03g00520 365 Gene3D - 87 268 IPR011989 -
Bhi03g00520 365 Gene3D - 269 365 IPR011989 -
Bhi03g00520 365 ProSiteProfiles U-box domain profile. 4 79 IPR003613 GO:0004842|GO:0016567
Bhi03g00520 365 SMART Ubox_2 8 72 IPR003613 GO:0004842|GO:0016567
Bhi03g00520 365 SUPERFAMILY ARM repeat 88 360 IPR016024 -
Bhi03g00520 365 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 129 171 IPR000225 GO:0005515
Bhi03g00520 365 SMART arm_5 200 241 IPR000225 GO:0005515
Bhi03g00520 365 SMART arm_5 159 199 IPR000225 GO:0005515
Bhi03g00520 365 SMART arm_5 118 158 IPR000225 GO:0005515
Bhi03g00520 365 CDD RING-Ubox_PUB 9 50 IPR045210 -
Bhi03g00520 365 Pfam U-box domain 6 72 IPR003613 GO:0004842|GO:0016567
Bhi03g00520 365 PANTHER U BOX DOMAIN-CONTAINING 1 361 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bhi03g00520 Bhi-Chr3:10043410 Bhi08g00620 Bhi-Chr8:20447784 1.68E-59 dispersed
Bhi03g00520 Bhi-Chr3:10043410 Bhi08g00619 Bhi-Chr8:20447784 1.68E-59 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bhi03g00520 - - csv:101213883 649.432