Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bhi03g00560 TGTAGTGGAACTTGACTTTGTTATTATCCTATTTAAATCTCTGGTGGGTGAAGCTTAATTCAGCACACTTCAAGCTTCACTTGCTAGCATTAGTGATTGTTCTGTTCATGGCTACCCATCAGCCACTTCTTCAACCCCCCAAAACTTCCCGCTCCAAAACCATCCCCACAATCCTCTGTTTTGCTGCAGTTTTGTGCTCAGCCATTTTCATTACCAACAAATTCATCAAATCAAACTCATCTGAAAATGATCTCTCCTTCCTTCACAACCTATGCCACAAGGCATACAACCCATCATCCTGCATTGAAATGGCCGCCTCAGAATTTCCCTTTCCTCGAGAAATCAAAACCACGAACAGGGGTCATTTCTTACAATCTTTCCTGAGGAAATCCATTCCTAAAGTAATTAACACAATCGACAGAGCCAAAGATCTCAGCCAGAGAATCAATAACCCACGCGGTGAAGCAGCTTTGGCCGATTGTGTCGAGCTTATGGAGATCTCAAACAGCCGAATCATAGACTCTGTTTCGGCTTTGAAGAACAGGACGAGCGGCTCAATCGAAAATGCTCACACATGGCTGAGTAGCGTGCTGACGAACCACATCACGTGCTGGGATGAGGTCGAGAATTCAGTATCCAGAGCGGCGGCCATGGATTTAGGGCTCGAAGAGTTGATTATGAGAGGGAGAAATTCGTTGGGGATGTTTGTTTCGATTTGGGAATCGGAAATTGAAAATATGGGGGAGTTGGAGAAAAGGGTAAATGGGTATCCGAGTTGGTTGAAGAAAGGAGATCGGAGACTGTTGGGGGTTCCGGGGAAAGAAATGGAAGCGAATATCGTGGTGGCGAAGGATGGGAGTGGGAATTTCATGACGGTGACTGAGGCGGTTGAATCAGTTCCAGATAAAAGCAAGAACAGAATTGTTATATATGTGAAGAAGGGTATCTATAAGGAAAAAGTGGAAGTGGGAAAGAAGAAAAAGAATGTGATGATCGTTGGAGATGGAATGGATTCCACCATTATCACCGGTAGCCTCAACGTCGTTGATGGATCAACAACTTTCAAATCTGCAACGGTAGCTGCGGTGGGAGATGGGTTTATAGCCCAAGACATTTGGTTCCAGAACACCGCCGGACCGGAAAAGCACCAAGCGGTGGCACTTCGGGTCGGAGCAGATCAATCCGTCATAAACCGGTGTCGTATCGACGCTTATCAAGACACTCTCTACACACATTCCAACCGTCAATTCTACCGAGATTCCACCATCACCGGCACTGTCGACTTCATATTCGGCAACGCCGCCGTCGTGTTACAGAACTGTAAAATAGAGCCTCGACGGCCGATGAGCAACCAGGCCAACATGGTGACGGCGCAAGGCCGAATGGACCCAAATCAGAACACGGGAAGTTCGATCCAGAAATGTGAAATTGTGGCAAGCTCAGATCTGGAGCCCGTTAAGCAATCGATTAAGACATATTTGGGGCGGCCATGGAAGGAGTATTCGAGGACCGTCGTCATGCAGTCGACAATTGGCGATCTTATTCAACCAGCGGGCTGGGCCGAATGGAATGGGGACTTTGCATTGAAGACGCTCTATTACGGTGAGTATTCCAATAATGGGCCGGGCTCTGATGTTAGCAAGCGAGTGAAGTGGGCCGGTTACCATGTCATAACGAGCCCATCTGAGGCCCAAAAATTCACGGTGGATTCGCTTATACAAGGAGGTGAATGGCTGGGCCCCTCAGGAGCCACTTTTATCCCAGGGCTGTGATTGTGTGCGTTACTGATCAACGGTTGGAATCTCCTTTTGCTGTGGTTGTTGTGGTAATGAAA 1834 47.55 MATHQPLLQPPKTSRSKTIPTILCFAAVLCSAIFITNKFIKSNSSENDLSFLHNLCHKAYNPSSCIEMAASEFPFPREIKTTNRGHFLQSFLRKSIPKVINTIDRAKDLSQRINNPRGEAALADCVELMEISNSRIIDSVSALKNRTSGSIENAHTWLSSVLTNHITCWDEVENSVSRAAAMDLGLEELIMRGRNSLGMFVSIWESEIENMGELEKRVNGYPSWLKKGDRRLLGVPGKEMEANIVVAKDGSGNFMTVTEAVESVPDKSKNRIVIYVKKGIYKEKVEVGKKKKNVMIVGDGMDSTIITGSLNVVDGSTTFKSATVAAVGDGFIAQDIWFQNTAGPEKHQAVALRVGADQSVINRCRIDAYQDTLYTHSNRQFYRDSTITGTVDFIFGNAAVVLQNCKIEPRRPMSNQANMVTAQGRMDPNQNTGSSIQKCEIVASSDLEPVKQSIKTYLGRPWKEYSRTVVMQSTIGDLIQPAGWAEWNGDFALKTLYYGEYSNNGPGSDVSKRVKWAGYHVITSPSEAQKFTVDSLIQGGEWLGPSGATFIPGL 554
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 10923138 10925060 + XM_039025742.1 Bhi03g00560 29337
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bhi03g00560 554 Pfam Pectinesterase 243 539 IPR000070 GO:0030599|GO:0042545
Bhi03g00560 554 Gene3D - 237 554 IPR012334 -
Bhi03g00560 554 CDD PMEI-like_4 55 203 - -
Bhi03g00560 554 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 51 175 IPR035513 -
Bhi03g00560 554 ProSitePatterns Pectinesterase signature 2. 387 396 IPR033131 -
Bhi03g00560 554 Gene3D Invertase/pectin methylesterase inhibitor family protein 49 202 IPR035513 -
Bhi03g00560 554 ProSitePatterns Pectinesterase signature 1. 268 287 IPR018040 -
Bhi03g00560 554 SMART PMEI_2 47 199 IPR006501 GO:0004857
Bhi03g00560 554 PANTHER PECTINESTERASE 12 553 - -
Bhi03g00560 554 SUPERFAMILY Pectin lyase-like 241 553 IPR011050 -
Bhi03g00560 554 Pfam Plant invertase/pectin methylesterase inhibitor 50 178 IPR006501 GO:0004857
Bhi03g00560 554 PANTHER PECTINESTERASE 12 553 - -
Bhi03g00560 554 TIGRFAM PME_inhib: pectinesterase inhibitor domain 25 172 IPR006501 GO:0004857
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bhi03g00560 Bhi-Chr3:10923138 Bhi09g00921 Bhi-Chr9:20518623 1.62E-152 dispersed
Bhi03g00560 Bhi-Chr3:10923138 Bhi12g00634 Bhi-Chr12:19483377 5.93E-152 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bhi03g00560 K01051 - csv:101216377 978.393