Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bhi03g00562 TTATCCAAACTTCTTTTCTTTTTCTTTTCTTTTTCTTCTTTCCCATATCTCTCTGATTCTCTCTTCCAAATTCTCAGTCTCAGAATCGTTCATTTCATTCCCCCTTGTGTATTTTTTTTTTACAATTTTATACCAACTTATAATCCCATTTCTCTTCCAAAAACAACCCTACTTTTCCCTCTTTGTTTCTTCTGTCTTCTCCCATTATGATTATCTCTTTCCCTTAACGTCCCTTCTTTGCTTCCTTTTCTGCGCCAATCCACCCAGAAAAGAAAATTGGCGAGTGAGTGAAGATGTTCGATCCAGATATGTTTGATACTCACCATCATATGCTCGAGGAGTTGGAAAATATGAGAGATGATGAATTTGAGACCAAATCAGGCGCAGAAATCTTAGAAGCTGCTTGTGGAACTGACCAACAACGCTCAAAAAAGAAACGTTACAATCGTCATACACAACATCAAATCCAAGAAATGGAGGCATTTTTCAAGGAATGTCCTCACCCTGATGACAAGCAGAGAATGGAGCTGAGCCGCGAGCTGGGGTTGGAGCCATTGCAAGTGAAGTTTTGGTTTCAAAACAAACGCACCCAGATGAAGGCTCAACATGAGAGACATGAAAACGCAATTTTGAAGGCCGAAAACGAGAAGCTTCGTGCTGAGAATATTCGTTACAGAGAAGCATTTGCGCATTCAACTTGCCCTAACTGCGGTTCTTCCTCCACTGCACTCGGCGAAATGTCCTTTGACGACCAACATTTGCGCATTGAAAATTCCCGCTTGCGAGATGAGATCGAGCGAATGAGTGGATATGGATCGAAATGCACAAAGCCGTACTATCAACTGCCGACGAATGCTTCGACGCGATCCCTGGACTTGGGCATCACAAATTTCGGTCCACAGTCGTCGGGATTCGTGGGGGAAATGTACGGTGCAGCGGATTTTTTCCGGTCGATATCGAGACCATCAGAAGGGGAGAAGCCGGTGATCGTGGAGCTGGCGGTTTCGGGGATGGAGGAATTGAGGAGAATGGCTCAGGGCGGGGAGCCGTTGTGGGTTGCGGGTGATGGGAAGTCGTCGAGCGAAGTGGTTCTTAACGAAGCGGAGTATTTGAGCAGTTTCGGAGGTGGAATTGGGGGAAAGCCCATGGGCTTTAGAACTGAAGCTTCGAGAGTTTCGGCTATTGTTTTCATGAACCATATCAAGCTTGTCGATACTTTTATGGATGCTACGCAATGGTCCACGGTGTTTTGCGGCATTGTTTCGAGAGCATCCACTGTGGAAATTCTTTCGCCTGGCCTACCTGGAAACTTCAACGGGGCCTTGCACGTGATGAGCGCTGAATTCCAAGTCCCATCGCCGCTAGTTCCGACTCGTGAAAACTACTTCGTAAGATACTGCAAACAACAAAGCGACGGGATATGGGCTGTTGCTGATGTTTCTTTAGACACCTTGCGCCCTTCTCTCATCCCTACCACCCGAAGAAAACCCTCTGGTTGCTTAATTCAAGAATTGCCCAACGGCTATTCCAAGATCACTTGGGTCGAACATGTTGAAGTCGACGAAACTGGCATCCCCACGATGTACAGGCCTCTCGTTAATTCCGGCCTCGCTTTCGGGGCTAAACGATGGGTCGCTACCTTAGATCGCCAATCTGAGCGTTTCGCCACTTCAATCGCCACCACCATTCCCACCGGCGATTTACGTGTGATATCGAGTATTGAAGGCAGGAAGAGTATGCTGAAGTTAGCGGAGAGAATGGTGACCAGCTTCTGTGCCGGTGTTGGCGCGTCCAGTGTACACGCTTGGACGGCATTACCTGCTGCCGCCGGCGATGAGGTTCGTGTTGTGACGAGGAAAAGTACCGACGAACCAGGGCGACCACCCGGTGTTGTTCTGAGCGCTGCCACTTCTTTTTGGATCCCGGTTTCACCTAAGGTTGTCTTTGATTTCCTCCGGAAAGAGAAATCTCGAAGCGAGTGGGATATTCTGTCGAATGGGGGATTGGTTCAGGAAATGGCGCACATAGCCAACGGCCGTCACTCCGGGAATTGTGTCTCCTTGCTTCGTGTCAATAGTGCGAATTCGAGCCAGAGCAATATGCTGATACTACAAGAAAGCTGCACCGACTCAACGGGATCGTACGTTATTTATGCTCCGGTAGACACCGTTGCAATGAACGTGGTGCTAAGCGGTTGCGATCCAGATTATGTGGCACTTCTACCGTCGGGATTCGCCATACTTCCAGACGGACCCGGCGGAGGATGCAACAACGGCGGCGAAATTCTGGAGCTGGGATCCGGTGGGTCGCTCATCACAGTTGCATTTCAAATCCTGGTAGATTCAGTTCCAACGGCTAGACTTTCAATCGGATCAGTGGCCACCGTCAACAGTCTGATCAAATGCACGGTGGAAAGGATCAGAGCCGCCGTGATGCGTGAAAACCCATGATTAAAAAACGCTCCCCCTTTTTCCAACTACGTAGCAGAGGAAGAGGAGAAGTCAAGAACGCACCTTGAAATATGGAAAATGAGAGAATCGAGGAGGTTCGGGCATTGACTTTACTCAAACCTTCAACTAAAATAAGAAATTTTTCTTCAACTTAAGTTCGTTGTTCGTGGTTTCTTAGATATAGGATTAAGATTAAGGAGGTTTTTCTGTAATTTTCTTTTGGTTTTCATGGTTAATACTGTTTTGAAATTGTCATTAGGTTGGTGAATAATAATATTAAGAGACACTGATTGTAAACCTTTTAGTTTTGTTAACCAACACTCCTATGTTATTATTACTATTTATATGTCGGGTCAAGCTGAC 2813 46.78 MFDPDMFDTHHHMLEELENMRDDEFETKSGAEILEAACGTDQQRSKKKRYNRHTQHQIQEMEAFFKECPHPDDKQRMELSRELGLEPLQVKFWFQNKRTQMKAQHERHENAILKAENEKLRAENIRYREAFAHSTCPNCGSSSTALGEMSFDDQHLRIENSRLRDEIERMSGYGSKCTKPYYQLPTNASTRSLDLGITNFGPQSSGFVGEMYGAADFFRSISRPSEGEKPVIVELAVSGMEELRRMAQGGEPLWVAGDGKSSSEVVLNEAEYLSSFGGGIGGKPMGFRTEASRVSAIVFMNHIKLVDTFMDATQWSTVFCGIVSRASTVEILSPGLPGNFNGALHVMSAEFQVPSPLVPTRENYFVRYCKQQSDGIWAVADVSLDTLRPSLIPTTRRKPSGCLIQELPNGYSKITWVEHVEVDETGIPTMYRPLVNSGLAFGAKRWVATLDRQSERFATSIATTIPTGDLRVISSIEGRKSMLKLAERMVTSFCAGVGASSVHAWTALPAAAGDEVRVVTRKSTDEPGRPPGVVLSAATSFWIPVSPKVVFDFLRKEKSRSEWDILSNGGLVQEMAHIANGRHSGNCVSLLRVNSANSSQSNMLILQESCTDSTGSYVIYAPVDTVAMNVVLSGCDPDYVALLPSGFAILPDGPGGGCNNGGEILELGSGGSLITVAFQILVDSVPTARLSIGSVATVNSLIKCTVERIRAAVMRENP 718
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 10952068 10960674 + XM_039025528.1 Bhi03g00562 29339
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bhi03g00562 718 ProSiteProfiles START domain profile. 225 459 IPR002913 GO:0008289
Bhi03g00562 718 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 14 715 IPR042160 -
Bhi03g00562 718 SUPERFAMILY Bet v1-like 478 710 - -
Bhi03g00562 718 Pfam Homeodomain 47 102 IPR001356 GO:0003677
Bhi03g00562 718 ProSiteProfiles 'Homeobox' domain profile. 44 104 IPR001356 GO:0003677
Bhi03g00562 718 Coils Coil 98 130 - -
Bhi03g00562 718 SMART HOX_1 45 108 IPR001356 GO:0003677
Bhi03g00562 718 Gene3D - 287 456 IPR023393 -
Bhi03g00562 718 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN PROTODERMAL FACTOR 2 14 715 - -
Bhi03g00562 718 SMART START_1 234 456 IPR002913 GO:0008289
Bhi03g00562 718 CDD homeodomain 46 105 IPR001356 GO:0003677
Bhi03g00562 718 ProSitePatterns 'Homeobox' domain signature. 79 102 IPR017970 GO:0000981|GO:0006355
Bhi03g00562 718 Gene3D - 35 120 - -
Bhi03g00562 718 SUPERFAMILY Homeodomain-like 38 104 IPR009057 -
Bhi03g00562 718 Pfam START domain 236 456 IPR002913 GO:0008289
Bhi03g00562 718 CDD START_ArGLABRA2_like 229 455 - -
Bhi03g00562 718 SUPERFAMILY Bet v1-like 228 457 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bhi03g00562 Bhi-Chr3:10952068 Bhi10g01448 Bhi-Chr10:34590065 0 dispersed
Bhi03g00562 Bhi-Chr3:10952068 Bhi03g00563 Bhi-Chr3:10952068 0 tandem
Bhi03g00562 Bhi-Chr3:10952068 Bhi05g01315 Bhi-Chr5:46309184 0 wgd
Bhi03g00562 Bhi-Chr3:10952068 Bhi08g01782 Bhi-Chr8:51535559 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
572 PF01852 START 3.70E-46 CL0209 Bhi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bhi03g00562 K09338 - csv:101209093 1357.04