Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bhi03g00593 CGCGAACAAATTGGGGAGAAAAAGGAAATGTGGGCGTCAGAGTTGGTGCTCGGCCTCTATGGGCAAAGAGGGGTTCGAATTGGAGAATATTCTCTGAAACTGGGCATTGGCAGAAGCAGAGAAACAGAAGTGGAATCCTAAGCAAAGGAATTATGGCGGAGTTGGACTTGTAGGAAACCTTTCAAAAGCTGAACCCAATTCATTCAATTCACAGGGACGATCATTCCTGAAAATGTGAAGCAAGTAAATCCAAGTAGCCTGATGGGAGATTTCTGTACAAGGAAGAGCAATTTCTGCACAAATCAGAGAAGTTGTATTGGACAATGGATTGTTGAAGGTGACAATATCAAACCCCCAAGGGTATGTAAGTGGCATCATGTATGGAGGCCTGGACAATCTGTTAGATGTGAAATCAAGTGAATCTAAAAGAGGATATTGGGATATCAACTGGAGTTGGCCTGGAGGCAAGGACAGATACCAATTGCTTAAGGGATCTGAATTCAATGTCATCAACACAAGTGATGACACGATCGAAATATCATTCAGGAAAGTTCTTGACCCATCAACTCGAGGCAACAAACTTCCACTTGGTGTGGACATAAGGTACATAATGAGGACTGGTATTCCAGGCTTCTATTGCTATGCAATCTACGAGCACCCGTCAGAATGTCGGGCTTTCGATCTTGCTCAGACAAGAATGGTGTTCAAACTGCGACAAGAGAAGTTCCACTACATGGCAATTTCAGATGAGAAGCAAAGAATAATGCCAATGCCAGAGGATTTGCATCCAGGCAGAGGTGAACAACTAATTGTACCAGAGTCAGTTCTGCTTGTAAATCCCATTAATCCTGATCTGAAAGGAGAGGTAGATGATAAGTACCAATACTCCATGGATAACAAAGATGGAGGAGTTCATGGATGGATAAGTTCCAGCCCAAACAACATAGGTTTTTGGATAGTTTTTCCAAGCCATGAGTTCCGAAATGGAGGTCCTACAAAGCAAAATCTGACAGTCCATACTGGTCCTACATGTCTTGCTATGTTTCATGGAACCCATTACATTGGAGAAGATATACTCACACATATTAAGGAGGGACAGACATGGAGAAAGGTCTTTGGTCCTATTCTTGTATACCTTAACTCCACCTCAGACGTATCAGAGGCACACAATTTATGGATAGATGCAAAAGAACAGAGAATGCTAGAGGAAACAGCATGGCCGTACAATTTTGTCTCTTCATCTTTTTATTTAATGGCAAATGAACGTGGTTCAATTTCAGGAAGACTACTAGTCCAAGACAGATTTATTTCAAGTTCCCCCATCCCTGCGAGAGATGCGCATATTGGTTTATCCGCTGCTAGAAAAGAAGGTGCCTGGCAAACAGAAAGCAAGGAATATCAGTTTTGGGTAAAAACAGATTCCAATGGAGATTTCACTATCAGAAACATTATTCCTGGAGTCTATGGACTTCATGGTTGGGTACCTGGGTTCATTGGTGATTATCTTCACAAGTCACTAGTAACAGTATCTGCAGGATCTTATACCCATCTTGGCATTCTGACCTATAGTCCCCTCAGAGATGGTCCTACTTTATGGGAGATTGGTTTTCCAGACCGTACAGCTAATAGCTTCTATGTTCCTGATGTGAATCCGATGTATGTCAACAAGTTATTCCTTCACAGCCCAGAAAAGTTCAGGCAATATGGTTTATGGGAGGGATACAGTGATTTACATCCAATAAATGACCAAGTTTTCACTGTGGGTATCAATAATCCGAAAAAAGACTGGTTCTTTGCTCAAGTTTGTAGAAGAGGGGAAGATGGTGAATATGTTGCGACAACATGGACTATTAAGTTCAACATGACATCCTTAACCAATGAAACTTACCGGCTGAGGTTGGCCATTGCATCTGCAACACGCTCGAACTTGAAGATTAATGTCAACTCAAAGGGGTCGGAGCAGTCTCTGGTCTTCCAGCTGATGGATTTGGGAATGGATAACACAGTTTGTCGACATGGGATTCATGGACTGTACCGAATTTACAGTATCGACATTCCATCTTCAATGCTTGTTAAGGGAGATAACTCCATATTTCTCACACAGGCAAGGAATGGAGATGCACTCTGTGGAATTTTATACGATTATTTAAGATTGGAAGCTCCCGATACTCCATGAAGTCACTTGAAGATTTTAATTCAATGCCATTTTATCCGAATCCAAAGGCACAAGCTAGAGCGAAATCCTGAGCATTTGTGAATGATATTGGTTTCAATGTGGGCCAAATGTATTGTTAAAGGTTCCCAAGTTCTTGAAAAGTGATACTCAAAGCATTCCACTAATCAAAGCCGAATTTCATAACAAACAACGTATTCTTTATCCTTAGCTGATCTGAATACAACAATCAATCATACACGGATATTGACTAAGATAGTAATGAAATACGGCTAACCCAAACCCCAAAATCTACATAGAATAACGATACTCTAGATTAGGCGAAAATTTAGACTGCTTCTTGTGTCAACTGTATAATTGACTCCCTGGAGCTGGCCACATTTTTGTATATAGGTGTATTCCAGAAACATTCTGGTTCGATCATCGGAAAGCATTTACAAAAGCCATAAGCGAGTCAACATCTCTCTTCTCAGATGGGTACTTGATCGGCCGAGAGGAAT 2673 41.23 MYGGLDNLLDVKSSESKRGYWDINWSWPGGKDRYQLLKGSEFNVINTSDDTIEISFRKVLDPSTRGNKLPLGVDIRYIMRTGIPGFYCYAIYEHPSECRAFDLAQTRMVFKLRQEKFHYMAISDEKQRIMPMPEDLHPGRGEQLIVPESVLLVNPINPDLKGEVDDKYQYSMDNKDGGVHGWISSSPNNIGFWIVFPSHEFRNGGPTKQNLTVHTGPTCLAMFHGTHYIGEDILTHIKEGQTWRKVFGPILVYLNSTSDVSEAHNLWIDAKEQRMLEETAWPYNFVSSSFYLMANERGSISGRLLVQDRFISSSPIPARDAHIGLSAARKEGAWQTESKEYQFWVKTDSNGDFTIRNIIPGVYGLHGWVPGFIGDYLHKSLVTVSAGSYTHLGILTYSPLRDGPTLWEIGFPDRTANSFYVPDVNPMYVNKLFLHSPEKFRQYGLWEGYSDLHPINDQVFTVGINNPKKDWFFAQVCRRGEDGEYVATTWTIKFNMTSLTNETYRLRLAIASATRSNLKINVNSKGSEQSLVFQLMDLGMDNTVCRHGIHGLYRIYSIDIPSSMLVKGDNSIFLTQARNGDALCGILYDYLRLEAPDTP 599
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 11514514 11519512 - XM_039025290.1 Bhi03g00593 29370
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bhi03g00593 599 CDD RGL4_M 296 393 IPR029413 -
Bhi03g00593 599 Gene3D - 293 394 - -
Bhi03g00593 599 CDD RGL4_C 407 594 - -
Bhi03g00593 599 Gene3D - 14 267 IPR014718 GO:0030246
Bhi03g00593 599 CDD RGL4_N 5 263 - -
Bhi03g00593 599 Pfam Rhamnogalacturonate lyase family 2 164 IPR010325 -
Bhi03g00593 599 SUPERFAMILY Galactose-binding domain-like 402 594 IPR008979 -
Bhi03g00593 599 PANTHER RHAMNOGALACTURONATE LYASE FAMILY PROTEIN 2 597 - -
Bhi03g00593 599 Pfam Polysaccharide lyase family 4, domain III 405 593 IPR029411 -
Bhi03g00593 599 Pfam Polysaccharide lyase family 4, domain II 328 391 IPR029413 -
Bhi03g00593 599 SUPERFAMILY Starch-binding domain-like 292 394 IPR013784 GO:0030246
Bhi03g00593 599 PANTHER POLYSACCHARIDE LYASE FAMILY 4 PROTEIN 2 597 - -
Bhi03g00593 599 Gene3D - 403 594 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bhi03g00591 Bhi-Chr3:11514435 Bhi03g00593 Bhi-Chr3:11514514 0 dispersed
Bhi03g00593 Bhi-Chr3:11514514 Bhi04g01405 Bhi-Chr4:35586119 0 dispersed
Bhi03g00592 Bhi-Chr3:11514435 Bhi03g00593 Bhi-Chr3:11514514 0 tandem
Bhi03g00593 Bhi-Chr3:11514514 Bhi03g00594 Bhi-Chr3:11514514 0 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bhi03g00593 K18195 - csv:101220336 1179.85