Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bhi03g00626 TTTTTTTTTTTTAAAACCCTCCTTCTGATCCATAACTGAGATCTTTCTTACAAATATCACTGTTTTTTTCTTTTTTAAAAAACCCCAAAAGCCTGAACTTTTCGAAGCTAAAATCCCGGGAGTGGATTTAATAGAAGAGAGAGAGAGAGAGAGAGAGTAATAATACTACAAGTTTGGGTTTGGAGCTGTTGTTATTATTTTATTTTCAATGGATGGTCCAAGTGGAAGTTCTTCTGGAGGTATGATGAATTTTGGTGATCAAAATAACAATAATAATAATAATAATAATGGGTTATGTTCGACGATGATGATGATGATGCCATTAATTTCCTCTTCTCAACAAGGTGGAAATGGGTCATGTACTCCATTTCTTTCTCTTCCTCCTAATTACAACAACAATAATAATACTTCTAATAATTCTATTTGTAATTACTTCATGGATTCAAACAACAACAACAACAACGAGAGTAGTAATGGAGGCAATTCTTGTTGTGAAGTGAAGGCTAAAATCATGGCTCATCCTCATTACCACCGTCTCCTGGCTGCCTATGTCAATTGTCGAAAGGTGGGGGCGCCGCCGGAAGTGGTGGCTGGGCTTGAAGAAGCGTGTGCAAGTGCAGCAAGAATGAGTGGTAATAGTAGTGGGTGTATTGGGGAAGATCCAGCCCTTGATCAGTTCATGGAAGCTTATTGTGAGATGCTTATTAAATATGAACAAGAACTCTCTAAACCATTTAGGGATGCCATGCTTTTTCTTCAACGAATTGACTCCCAATTCAAAGCGCTATCTATCTCCTCCTCTTACCCCCCTGCTTGTGGCGAGGCATTTGATAGGAACGGATCATCCGAAGAGGAAGTTGATATCAATGGGAACTCGATCGATCCCCAGGCGGAAGACCGTGAACTGAAAGGTCAACTCTTGCGCAAATACAGCGGATACTTAGGCAGTCTGAAGCAAGAATTCATGAAGAAAAGGAAGAAAGGGAAGCTACCTAAGGAAGCCAGACAACAACTCCTGGATTGGTGGAGCAGACATTACAAATGGCCTTATCCATCTGAATCCCAGAAGCTAGCTTTAGCTCAATCAACTGGGTTAGATCAAAAGCAAATCAATAACTGGTTCATCAATCAAAGAAAAAGACACTGGAAACCATCAGAAGATATGCAATTTGTGGTGATGGATGCTGCTCATCCACAGTATTACATGGACACTGTCTTAGGGAATCCTTTTCCCTTGGATATCTCTCCTACTCTACTCTAATTAATTAATTTGCACATTGTTATGATTTTAATATAATGTCACATTATATATATGATGATGATGGTGGTGATGATGGCCTTTTTATTTTTCTTTTTTGTGTATCAATGTTTGAGGAATGTTTCAACTGGTTTGAAAGAACATATATATGCCTTTTTATTATATACTTCATATTATATGTTAGTCCCAACGGAGAAGTTGGTAGTTTAAACATGTTGCAAGTCTTGGGGCTTATGTGGTGTGTGATTTGATTTTATTTGTATGTA 1524 38.12 MDGPSGSSSGGMMNFGDQNNNNNNNNNGLCSTMMMMMPLISSSQQGGNGSCTPFLSLPPNYNNNNNTSNNSICNYFMDSNNNNNNESSNGGNSCCEVKAKIMAHPHYHRLLAAYVNCRKVGAPPEVVAGLEEACASAARMSGNSSGCIGEDPALDQFMEAYCEMLIKYEQELSKPFRDAMLFLQRIDSQFKALSISSSYPPACGEAFDRNGSSEEEVDINGNSIDPQAEDRELKGQLLRKYSGYLGSLKQEFMKKRKKGKLPKEARQQLLDWWSRHYKWPYPSESQKLALAQSTGLDQKQINNWFINQRKRHWKPSEDMQFVVMDAAHPQYYMDTVLGNPFPLDISPTLL 350
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 11851260 11854839 - XM_039027442.1 Bhi03g00626 29403
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bhi03g00626 350 SMART KNOX1_2 95 139 IPR005540 GO:0003677|GO:0005634
Bhi03g00626 350 ProSitePatterns 'Homeobox' domain signature. 290 313 IPR017970 GO:0000981|GO:0006355
Bhi03g00626 350 SUPERFAMILY Homeodomain-like 254 328 IPR009057 -
Bhi03g00626 350 MobiDBLite consensus disorder prediction 1 20 - -
Bhi03g00626 350 SMART HOX_1 254 319 IPR001356 GO:0003677
Bhi03g00626 350 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 3 339 - -
Bhi03g00626 350 Pfam KNOX2 domain 147 193 IPR005541 GO:0003677|GO:0005634
Bhi03g00626 350 SMART KNOX2_2 144 195 IPR005541 GO:0003677|GO:0005634
Bhi03g00626 350 Pfam Homeobox KN domain 272 311 IPR008422 GO:0003677|GO:0006355
Bhi03g00626 350 CDD homeodomain 264 316 IPR001356 GO:0003677
Bhi03g00626 350 Pfam KNOX1 domain 97 135 IPR005540 GO:0003677|GO:0005634
Bhi03g00626 350 Gene3D - 257 319 - -
Bhi03g00626 350 Pfam ELK domain 232 253 IPR005539 GO:0003677
Bhi03g00626 350 SMART ELK_2 232 253 IPR005539 GO:0003677
Bhi03g00626 350 PANTHER - 3 339 - -
Bhi03g00626 350 ProSiteProfiles 'Homeobox' domain profile. 252 315 IPR001356 GO:0003677
Bhi03g00626 350 ProSiteProfiles ELK domain profile. 232 252 IPR005539 GO:0003677
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bhi03g00626 Bhi-Chr3:11851260 Bhi05g01373 Bhi-Chr5:47748136 3.11E-126 dispersed
Bhi03g00626 Bhi-Chr3:11851260 Bhi05g01372 Bhi-Chr5:47748136 3.11E-126 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
579 PF03791 KNOX2 4.90E-20 No_clan Bhi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bhi03g00626 - - csv:101211566 604.364